PDB: 125 resultsInfo pagesStatus searchChemie searchBIRD

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4TR7	Crystal structure of DNA polymerase sliding clamp from Mycobaterium tuberculosis Descriptor: DNA polymerase III subunit beta Authors: Olieric, V, Burnouf, D, Ennifar, E, Wolff, P. Deposit date: 2014-06-14 Release date: 2014-09-10 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem., 57, 2014
3Q4J	Structure of a small peptide ligand bound to E.coli DNA sliding clamp Descriptor: DNA polymerase III subunit beta, peptide ligand Authors: Wolff, P, Olieric, V, Briand, J.P, Chaloin, O, Dejaegere, A, Dumas, P, Ennifar, E, Guichard, G, Wagner, J, Burnouf, D. Deposit date: 2010-12-23 Release date: 2011-12-28 Last modified: 2013-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure-based design of short peptide ligands binding onto the E. coli processivity ring. J.Med.Chem., 54, 2011
5G4Q	H.pylori Beta clamp in complex with 5-chloroisatin Descriptor: 5-chloro-1H-indole-2,3-dione, DNA POLYMERASE III SUBUNIT BETA Authors: Pandey, P, Gourinath, S. Deposit date: 2016-05-16 Release date: 2017-06-21 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Screening of E. coli beta-clamp Inhibitors Revealed that Few Inhibit Helicobacter pylori More Effectively: Structural and Functional Characterization. Antibiotics (Basel), 7, 2018
4N99	E. coli sliding clamp in complex with 6-chloro-2,3,4,9-tetrahydro-1H-carbazole-7-carboxylic acid Descriptor: 6-chloro-2,3,4,9-tetrahydro-1H-carbazole-7-carboxylic acid, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-10-19 Release date: 2013-11-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Discovery of lead compounds targeting the bacterial sliding clamp using a fragment-based approach. J.Med.Chem., 57, 2014
5AH4	The sliding clamp of Mycobacterium smegmatis in complex with a natural product. Descriptor: CYCLOHEXYL GRISELIMYCIN, DNA POLYMERASE III SUBUNIT BETA, SODIUM ION Authors: Lukat, P, Kling, A, Heinz, D.W, Mueller, R. Deposit date: 2015-02-04 Release date: 2015-06-03 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.313 Å) Cite: Antibiotics. Targeting Dnan for Tuberculosis Therapy Using Novel Griselimycins. Science, 348, 2015
6E8D	Crystal structure of the Bacillus subtilis sliding clamp-MutL complex. Descriptor: Beta sliding clamp,DNA mismatch repair protein MutL, GLYCEROL Authors: Guarne, A, Almawi, A.W. Deposit date: 2018-07-28 Release date: 2019-05-01 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Binding of the regulatory domain of MutL to the sliding beta-clamp is species specific. Nucleic Acids Res., 47, 2019
6MAN	Crystal structure of a DnaN sliding clamp DNA polymerase III subunit beta from Rickettsia bellii RML369-C Descriptor: 1,2-ETHANEDIOL, Beta sliding clamp, THIOCYANATE ION Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-08-28 Release date: 2018-09-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal structure of a DnaN sliding clamp DNA polymerase III subunit beta from Rickettsia bellii RML369-C To Be Published
8DT6	Crystal Structure of DNA Polymerase III beta subunit from Elizabethkingia anophelis Descriptor: Beta sliding clamp, CALCIUM ION, CHLORIDE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2022-07-25 Release date: 2022-08-10 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal Structure of DNA Polymerase III beta subunit from Elizabethkingia anophelis to be published
6AMS	Crystal structure of the DNA polymerase III subunit beta from Pseudomonas aeruginosa Descriptor: Beta sliding clamp, PHOSPHATE ION Authors: McGrath, A.E, Oakley, A.J. Deposit date: 2017-08-11 Release date: 2017-11-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Crystal structures and biochemical characterization of DNA sliding clamps from three Gram-negative bacterial pathogens. J. Struct. Biol., 204, 2018
7AZL	DNA polymerase sliding clamp from Escherichia coli with peptide 38 bound Descriptor: Beta sliding clamp, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
6DEG	Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9 Descriptor: Beta sliding clamp Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-05-11 Release date: 2018-05-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9 To Be Published
6D47	Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Mycobacterium marinum Descriptor: Beta sliding clamp Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-04-17 Release date: 2018-05-02 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Mycobacterium marinum To Be Published
8DK9	Sliding-clamp-DinX peptide Descriptor: ACETYL GROUP, AMINO GROUP, Beta sliding clamp, ... Authors: Kapur, M.K, Gray, O.J, Honzatko, R.H, Nelson, S.N. Deposit date: 2022-07-05 Release date: 2023-01-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Interaction of sliding clamp with mycobacterial polymerases To Be Published
8DJ6	Sliding-clamp-ImuB peptide Descriptor: ACETATE ION, Beta sliding clamp, FORMIC ACID, ... Authors: Kapur, M.K, Gray, O.J, Honzatko, R.H, Nelson, S.N. Deposit date: 2022-06-30 Release date: 2023-07-26 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Interaction of sliding clamp with mycobacterial polymerases To Be Published
4K74	The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the beta-clamp processivity factor. Descriptor: DNA polymerase III subunit beta, UmuC peptide Authors: Patoli, A.A, Winter, J.A, Bunting, K.A. Deposit date: 2013-04-16 Release date: 2013-07-17 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the beta-clamp processivity factor. Bmc Struct.Biol., 13, 2013
1JQL	Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140) Descriptor: DNA Polymerase III, BETA CHAIN, DELTA SUBUNIT Authors: Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J. Deposit date: 2001-08-07 Release date: 2001-09-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell(Cambridge,Mass.), 106, 2001
2AWA	Crystal structure of DNA polymerase III, beta chain (EC 2.7.7.7) (np_344555.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 2.50 A resolution Descriptor: DNA polymerase III, beta chain, GLYCEROL Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2005-08-31 Release date: 2005-09-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of DNA polymerase III, beta chain (EC 2.7.7.7) (np_344555.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 2.50 A resolution To be published
2POL	THREE-DIMENSIONAL STRUCTURE OF THE BETA SUBUNIT OF ESCHERICHIA COLI DNA POLYMERASE III HOLOENZYME: A SLIDING DNA CLAMP Descriptor: DNA POLYMERASE III (BETA SUBUNIT) Authors: Kong, X.-P, Kuriyan, J. Deposit date: 1992-11-13 Release date: 1994-01-31 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell(Cambridge,Mass.), 69, 1992
3Q4K	Structure of a small peptide ligand bound to E.coli DNA sliding clamp Descriptor: DNA polymerase III subunit beta, peptide ligand Authors: Wolff, P, Olieric, V, Briand, J.P, Chaloin, O, Dejaegere, A, Dumas, P, Ennifar, E, Guichard, G, Wagner, J, Burnouf, D. Deposit date: 2010-12-23 Release date: 2011-12-28 Last modified: 2013-03-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure-based design of short peptide ligands binding onto the E. coli processivity ring. J.Med.Chem., 54, 2011
8GJ2	E. coli clamp loader with closed clamp on primed template DNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ... Authors: Oakley, A.J, Xu, Z.-Q, Dixon, N.E. Deposit date: 2023-03-14 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Structural characterisation of the complete cycle of sliding clamp loading in E. coli To Be Published
6AMQ	Crystal structure of the DNA polymerase III subunit beta from Enterobacter cloacae Descriptor: DNA polymerase III subunit beta, SULFATE ION Authors: McGrath, A.E, Oakley, A.J. Deposit date: 2017-08-11 Release date: 2017-11-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.67 Å) Cite: Crystal structures and biochemical characterization of DNA sliding clamps from three Gram-negative bacterial pathogens. J. Struct. Biol., 204, 2018
6FVO	Mutant DNA polymerase sliding clamp from Mycobacterium tuberculosis with bound P7 peptide Descriptor: Beta sliding clamp, CALCIUM ION, P7 peptide Authors: Martiel, I, Andre, C, Olieric, V, Guichard, G, Burnouf, D. Deposit date: 2018-03-04 Release date: 2019-04-10 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.689 Å) Cite: Peptide Interactions on Bacterial Sliding Clamps. Acs Infect Dis., 2019
8GIZ	E. coli clamp loader with open clamp Descriptor: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... Authors: Oakley, A.J, Xu, Z.-Q, Dixon, N.E. Deposit date: 2023-03-14 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Structural characterisation of the complete cycle of sliding clamp loading in E. coli To Be Published
8DJQ	Sliding-clamp-DnaE1 peptide Descriptor: ACETYL GROUP, AMINO GROUP, Beta sliding clamp, ... Authors: Kapur, M.K, Gray, O.J, Honzatko, R.H, Nelson, S.N. Deposit date: 2022-07-01 Release date: 2023-01-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Interaction of the sliding clamp with mycobacterial polymerases To Be Published
3P16	Crystal structure of DNA polymerase III sliding clamp Descriptor: DNA polymerase III subunit beta Authors: Gui, W.J, Lin, S.Q, Chen, Y.Y, Zhang, X.E, Bi, L.J, Jiang, T. Deposit date: 2010-09-30 Release date: 2011-08-24 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.89 Å) Cite: Crystal structure of DNA polymerase III beta sliding clamp from Mycobacterium tuberculosis. Biochem.Biophys.Res.Commun., 405, 2011

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