PDB: 47 件ウェブページステータス検索Chemie searchBIRD

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2AR0	Crystal structure of Type I restriction enzyme EcoKI M protein (EC 2.1.1.72) (M.EcoKI) 分子名称: Type I restriction enzyme EcoKI M protein, UNKNOWN ATOM OR ION 著者 Rajashankar, K.R, Kniewel, R, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2005-08-18 公開日 2005-08-30 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of Type I restriction enzyme EcoKI M protein (EC 2.1.1.72) (M.EcoKI). To be Published
2F8L	Crystal structure of a putative class i s-adenosylmethionine-dependent methyltransferase (lmo1582) from listeria monocytogenes at 2.20 A resolution 分子名称: CHLORIDE ION, GLYCEROL, S-ADENOSYLMETHIONINE, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2005-12-02 公開日 2006-01-17 最終更新日 2023-01-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of (16411011) from Listeria monocytogenes LI2 at 2.20 A resolution To be published
2OKC	Crystal structure of Type I restriction enzyme StySJI M protein (NP_813429.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution 分子名称: CHLORIDE ION, GLYCEROL, ISOPROPYL ALCOHOL, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2007-01-16 公開日 2007-01-30 最終更新日 2023-01-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of Type I restriction enzyme StySJI M protein (NP_813429.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution To be Published
2Y7C	Atomic model of the Ocr-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534. 分子名称: GENE 0.3 PROTEIN, TYPE I RESTRICTION ENZYME ECOKI M PROTEIN, TYPE-1 RESTRICTION ENZYME ECOKI SPECIFICITY PROTEIN 著者 Kennaway, C.K, Obarska-Kosinska, A, White, J.H, Tuszynska, I, Cooper, L.P, Bujnicki, J.M, Trinick, J, Dryden, D.T.F. 登録日 2011-01-31 公開日 2011-02-09 最終更新日 2019-10-23 実験手法 ELECTRON MICROSCOPY (18 Å) 主引用文献 The Structure of M.Ecoki Type I DNA Methyltransferase with a DNA Mimic Antirestriction Protein. Nucleic Acids Res., 37, 2009
2Y7H	Atomic model of the DNA-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534. 分子名称: 5'-D(*GP*TP*TP*CP*AP*AP*CP*GP*TP*CP*GP*AP*CP*GP *TP*GP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*CP*AP*CP*GP*TP*CP*GP*AP*CP*GP *TP*TP*GP*AP*AP*C)-3', S-ADENOSYLMETHIONINE, ... 著者 Kennaway, C.K, Obarska-Kosinska, A, White, J.H, Tuszynska, I, Cooper, L.P, Bujnicki, J.M, Trinick, J, Dryden, D.T.F. 登録日 2011-01-31 公開日 2011-02-09 最終更新日 2019-10-23 実験手法 ELECTRON MICROSCOPY (18 Å) 主引用文献 The Structure of M.Ecoki Type I DNA Methyltransferase with a DNA Mimic Antirestriction Protein. Nucleic Acids Res., 37, 2009
3KHK	Crystal structure of type-I restriction-modification system methylation subunit (MM_0429) from Methanosarchina mazei. 分子名称: SULFATE ION, Type I restriction-modification system methylation subunit 著者 Ramagopal, U.A, Toro, R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2009-10-30 公開日 2010-01-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Crystal structure of type-I restriction-modification system methylation subunit (MM_0429) from Methanosarchina mazei. To be Published
3LKD	Crystal Structure of the type I restriction-modification system methyltransferase subunit from Streptococcus thermophilus, Northeast Structural Genomics Consortium Target SuR80 分子名称: Type I restriction-modification system methyltransferase subunit 著者 Vorobiev, S, Su, M, Seetharaman, J, Mao, M, Xiao, R, Foote, E.L, Ciccosanti, C, Wang, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2010-01-27 公開日 2010-02-09 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Northeast Structural Genomics Consortium Target SuR80 To be published
3S1S	Characterization and crystal structure of the type IIG restriction endonuclease BpuSI 分子名称: 1,2-ETHANEDIOL, IODIDE ION, MANGANESE (II) ION, ... 著者 Shen, B.W, Xu, D, Chan, S.-H, Zheng, Y, Zhu, Y, Xu, S.-Y, Stoddard, B.L. 登録日 2011-05-16 公開日 2011-07-13 最終更新日 2011-10-19 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI. Nucleic Acids Res., 39, 2011
3UFB	Crystal structure of a modification subunit of a putative type I restriction enzyme from Vibrio vulnificus YJ016 分子名称: Type I restriction-modification system methyltransferase subunit 著者 Park, S.Y, Lee, H.J, Sun, J, Nishi, K, Song, J.M, Kim, J.S. 登録日 2011-11-01 公開日 2012-11-07 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural characterization of a modification subunit of a putative type I restriction enzyme from Vibrio vulnificus YJ016 Acta Crystallogr.,Sect.D, 68, 2012
4XQK	ATP-dependent Type ISP restriction-modification enzyme LlaBIII bound to DNA 分子名称: DNA (28-MER), LlaBIII, POTASSIUM ION 著者 Chand, M.K, Saikrishnan, K. 登録日 2015-01-19 公開日 2015-09-16 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Translocation-coupled DNA cleavage by the Type ISP restriction-modification enzymes Nat.Chem.Biol., 11, 2015
5FFJ	Structure of a nuclease-deletion mutant of the Type ISP restriction-modification enzyme LlaGI in complex with a DNA substrate mimic 分子名称: DNA (5'-D(P*TP*AP*GP*CP*TP*AP*AP*TP*AP*GP*AP*CP*TP*GP*GP*AP*TP*GP*GP*AP*GP*G)-3'), DNA (5'-D(P*TP*CP*CP*TP*CP*CP*AP*TP*CP*CP*AP*GP*TP*CP*TP*AP*TP*TP*AP*GP*CP*T)-3'), Endonuclease and methylase LlaGI 著者 Saikrishnan, K, Kulkarni, M, Nirwan, N. 登録日 2015-12-18 公開日 2016-03-30 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.84 Å) 主引用文献 Structural insights into DNA sequence recognition by Type ISP restriction-modification enzymes Nucleic Acids Res., 44, 2016
5YBB	Structural basis underlying complex assembly andconformational transition of the type I R-M system 分子名称: DNA, Restriction endonuclease S subunits, S-ADENOSYLMETHIONINE, ... 著者 Liu, Y.P, Tang, Q, Zhang, J.Z, Tian, L.F, Gao, P, Yan, X.X. 登録日 2017-09-04 公開日 2017-11-29 最終更新日 2018-02-07 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural basis underlying complex assembly and conformational transition of the type I R-M system. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7BST	EcoR124I-Ocr in the Intermediate State 分子名称: Overcome classical restriction gp0.3, Type I restriction enzyme EcoR124II M protein, Type I restriction enzyme R Protein, ... 著者 Gao, Y, Gao, P. 登録日 2020-03-31 公開日 2020-05-27 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.37 Å) 主引用文献 Structural insights into assembly, operation and inhibition of a type I restriction-modification system. Nat Microbiol, 5, 2020
7BTO	EcoR124I-ArdA in the Translocation State 分子名称: Antirestriction protein ArdA, Type I restriction enzyme EcoR124II M protein, Type I restriction enzyme R Protein, ... 著者 Gao, Y, Gao, P. 登録日 2020-04-02 公開日 2020-05-27 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.97 Å) 主引用文献 Structural insights into assembly, operation and inhibition of a type I restriction-modification system. Nat Microbiol, 5, 2020
7BTP	EcoR124I-Ocr in Restriction-Alleviation State 分子名称: Overcome classical restriction gp0.3, Type I restriction enzyme EcoR124II M protein, Type I restriction enzyme R Protein, ... 著者 Gao, Y, Gao, P. 登録日 2020-04-02 公開日 2020-05-27 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.01 Å) 主引用文献 Structural insights into assembly, operation and inhibition of a type I restriction-modification system. Nat Microbiol, 5, 2020
7BTQ	EcoR124I-DNA in the Restriction-Alleviation State 分子名称: DNA (64-MER), Type I restriction enzyme EcoR124II M protein, Type I restriction enzyme R Protein, ... 著者 Gao, Y, Gao, P. 登録日 2020-04-02 公開日 2020-05-27 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.54 Å) 主引用文献 Structural insights into assembly, operation and inhibition of a type I restriction-modification system. Nat Microbiol, 5, 2020
7BTR	EcoR124I-ArdA in the Restriction-Alleviation State 分子名称: Antirestriction protein ArdA, Type I restriction enzyme EcoR124II M protein, Type I restriction enzyme R Protein, ... 著者 Gao, Y, Gao, P. 登録日 2020-04-02 公開日 2020-05-27 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.54 Å) 主引用文献 Structural insights into assembly, operation and inhibition of a type I restriction-modification system. Nat Microbiol, 5, 2020
7EEW	Crystal structure of the intact MTase from Vibrio vulnificus YJ016 in complex with the DNA-mimicking Ocr protein and the S-adenosyl-L-homocysteine (SAH) 分子名称: Overcome classical restriction gp0.3, S-ADENOSYL-L-HOMOCYSTEINE, Type I restriction-modification system methyltransferase subunit 著者 Seo, P.W, Park, S.Y, Kim, J.S. 登録日 2021-03-19 公開日 2022-03-23 最終更新日 2022-07-13 実験手法 X-RAY DIFFRACTION (2.896 Å) 主引用文献 Structural features of a minimal intact methyltransferase of a type I restriction-modification system. Int.J.Biol.Macromol., 208, 2022
7LNI	SeMet CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA 分子名称: 1,2-ETHANEDIOL, DNA Strand 1, DNA Strand 2, ... 著者 Horton, J.R, Cheng, X, Zhou, J. 登録日 2021-02-07 公開日 2021-05-19 最終更新日 2021-07-14 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 Clostridioides difficile specific DNA adenine methyltransferase CamA squeezes and flips adenine out of DNA helix. Nat Commun, 12, 2021
7LNJ	CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA 分子名称: DNA Strand 1, DNA Strand 2, Site-specific DNA-methyltransferase (adenine-specific) 著者 Horton, J.R, Cheng, X, Zhou, J. 登録日 2021-02-07 公開日 2021-05-19 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 Clostridioides difficile specific DNA adenine methyltransferase CamA squeezes and flips adenine out of DNA helix. Nat Commun, 12, 2021
7LO5	cryoEM structure DrdV-DNA complex 分子名称: CALCIUM ION, DNA (27-MER), DNA (28-MER), ... 著者 Shen, B.W, Stoddard, B.L. 登録日 2021-02-09 公開日 2021-03-17 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM. Structure, 29, 2021
7LT5	CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Cofactor SAH 分子名称: 1,2-ETHANEDIOL, DNA Strand 1, DNA Strand 2, ... 著者 Horton, J.R, Cheng, X, Zhou, J. 登録日 2021-02-18 公開日 2021-05-19 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Clostridioides difficile specific DNA adenine methyltransferase CamA squeezes and flips adenine out of DNA helix. Nat Commun, 12, 2021
7LVV	cryoEM structure DrdV-DNA complex 分子名称: CALCIUM ION, DNA (27-MER), DNA (28-MER), ... 著者 Shen, B.W, Stoddard, B.L. 登録日 2021-02-26 公開日 2021-03-17 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.25 Å) 主引用文献 Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM. Structure, 29, 2021
7QW5	Adenine-specific DNA methyltransferase M.BseCI complexed with AdoHcy and cognate unmethylated DNA duplex 分子名称: Modification methylase BseCI, S-ADENOSYL-L-HOMOCYSTEINE, Unmethylated DNA duplex 著者 Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M. 登録日 2022-01-24 公開日 2023-01-25 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus. To Be Published
7QW6	Adenine-specific DNA methyltransferase M.BseCI complexed with AdoHcy and cognate hemimethylated DNA duplex 分子名称: Hemimethylated DNA duplex, Modification methylase BseCI, S-ADENOSYL-L-HOMOCYSTEINE 著者 Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M. 登録日 2022-01-24 公開日 2023-01-25 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus. To Be Published

 

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