PDB: 24 件ウェブページステータス検索Chemie searchBIRD

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2GKE	Crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor LL-AziDAP 分子名称: (2S,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACID, ACETIC ACID, Diaminopimelate epimerase, ... 著者 Pillai, B, Cherney, M.M, Diaper, C.M, Sutherland, A, Blanchard, J.S, Vederas, J.C, James, M.N. 登録日 2006-04-01 公開日 2006-05-16 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Structural insights into stereochemical inversion by diaminopimelate epimerase: An antibacterial drug target. Proc.Natl.Acad.Sci.Usa, 103, 2006
2GKJ	Crystal structure of diaminopimelate epimerase in complex with an irreversible inhibitor DL-AZIDAP 分子名称: (2R,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACID, ACETIC ACID, Diaminopimelate epimerase 著者 Pillai, B, Cherney, M.M, Diaper, C.M, Sutherland, A, Blanchard, J.S, Vederas, J.C, James, M.N. 登録日 2006-04-02 公開日 2006-05-16 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural insights into stereochemical inversion by diaminopimelate epimerase: An antibacterial drug target. Proc.Natl.Acad.Sci.Usa, 103, 2006
1GQZ	Refinement of Haemophilus influenzae Diaminopimelate epimerase at 1.7A 分子名称: DIAMINOPIMELATE EPIMERASE 著者 Roper, D.I, Huyton, T, Turkenburg, J.P. 登録日 2001-12-07 公開日 2003-06-12 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Refinement of Haemophilus influenzae diaminopimelic acid epimerase (DapF) at 1.75 A resolution suggests a mechanism for stereocontrol during catalysis. Acta Crystallogr. D Biol. Crystallogr., 60, 2004
6D1V	Crystal structure of E. coli RppH-DapF complex, monomer bound to RNA 分子名称: CHLORIDE ION, Diaminopimelate epimerase, GLYCEROL, ... 著者 Gao, A, Serganov, A. 登録日 2018-04-12 公開日 2018-05-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF. Nucleic Acids Res., 46, 2018
5HA4	Structure of a diaminopimelate epimerase from Acinetobacter baumannii 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, CHLORIDE ION, Diaminopimelate epimerase 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2015-12-30 公開日 2016-01-27 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure of a diaminopimelate epimerase from Acinetobacter baumannii to be published
3EJX	Crystal structure of diaminopimelate epimerase from Arabidopsis thaliana in complex with LL-AziDAP 分子名称: (2S,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACID, Diaminopimelate epimerase, chloroplastic 著者 Pillai, B, Moorthie, V.A, Cherney, M.M, Vederas, J.C, James, M.N.G. 登録日 2008-09-18 公開日 2009-02-17 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structure of diaminopimelate epimerase from Arabidopsis thaliana, an amino acid racemase critical for L-lysine biosynthesis. J.Mol.Biol., 385, 2009
5H2Y	Crystal structure of reduced DapF from Corynebacterium glutamicum 分子名称: Diaminopimelate epimerase 著者 Sagong, H.-Y, Kim, K.-J. 登録日 2016-10-18 公開日 2016-11-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for redox sensitivity in Corynebacterium glutamicum diaminopimelate epimerase: an enzyme involved in l-lysine biosynthesis. Sci Rep, 7, 2017
5H2G	Crystal structure of oxidized DapF from Corynebacterium glutamicum 分子名称: Diaminopimelate epimerase, GLYCEROL, SULFATE ION 著者 Sagong, H.-Y, Kim, K.-J. 登録日 2016-10-15 公開日 2016-11-09 最終更新日 2020-09-09 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for redox sensitivity in Corynebacterium glutamicum diaminopimelate epimerase: an enzyme involved in l-lysine biosynthesis. Sci Rep, 7, 2017
4IJZ	Crystal structure of diaminopimelate epimerase from Escherichia coli 分子名称: Diaminopimelate epimerase, NITRATE ION 著者 Hor, L, Dobson, R.C.J, Hutton, C.A, Perugini, M.A. 登録日 2012-12-24 公開日 2013-02-20 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Dimerization of bacterial diaminopimelate epimerase is essential for catalysis J.Biol.Chem., 288, 2013
4IK0	Crystal structure of diaminopimelate epimerase Y268A mutant from Escherichia coli 分子名称: Diaminopimelate epimerase, IODIDE ION 著者 Hor, L, Dobson, R.C.J, Hutton, C.A, Perugini, M.A. 登録日 2012-12-24 公開日 2013-02-20 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Dimerization of bacterial diaminopimelate epimerase is essential for catalysis J.Biol.Chem., 288, 2013
6VCL	Crystal structure of E.coli RppH-DapF in complex with pppGpp, Mg2+ and F- 分子名称: CHLORIDE ION, Diaminopimelate epimerase, FLUORIDE ION, ... 著者 Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A. 登録日 2019-12-21 公開日 2020-02-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH. Nucleic Acids Res., 48, 2020
7VDY	Crystal structure of O-ureidoserine racemase 分子名称: O-ureido-serine racemase, SULFATE ION 著者 Oda, K, Matoba, Y. 登録日 2021-09-07 公開日 2021-12-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.12 Å) 主引用文献 Crystal structure of O-ureidoserine racemase found in the d-cycloserine biosynthetic pathway. Proteins, 90, 2022
6D1Q	Crystal structure of E. coli RppH-DapF complex, monomer 分子名称: CHLORIDE ION, Diaminopimelate epimerase, GLYCEROL, ... 著者 Gao, A, Serganov, A. 登録日 2018-04-12 公開日 2018-05-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF. Nucleic Acids Res., 46, 2018
2Q9J	Crystal structure of the C217S mutant of diaminopimelate epimerase 分子名称: 1,2-ETHANEDIOL, Diaminopimelate epimerase, SULFATE ION 著者 Pillai, B, Cherney, M, Diaper, C.M, Sutherland, A, Blanchard, J.S, Vederas, J.C. 登録日 2007-06-12 公開日 2007-10-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Dynamics of catalysis revealed from the crystal structures of mutants of diaminopimelate epimerase. Biochem.Biophys.Res.Commun., 363, 2007
5YGU	Crystal structure of Escherichia coli (strain K12) mRNA Decapping Complex RppH-DapF 分子名称: Diaminopimelate epimerase, IODIDE ION, L(+)-TARTARIC ACID, ... 著者 Wang, Q, Guan, Z.Y, Zhang, D.L, Zou, T.T, Yin, P. 登録日 2017-09-27 公開日 2018-06-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.298 Å) 主引用文献 DapF stabilizes the substrate-favoring conformation of RppH to stimulate its RNA-pyrophosphohydrolase activity in Escherichia coli. Nucleic Acids Res., 46, 2018
2Q9H	Crystal structure of the C73S mutant of diaminopimelate epimerase 分子名称: ACETIC ACID, Diaminopimelate epimerase, L(+)-TARTARIC ACID 著者 Pillai, B, Cherney, M, Diaper, C.M, Sutherland, A, Blanchard, J.S, Vederas, J.C, James, M.N.G. 登録日 2007-06-12 公開日 2007-10-23 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Dynamics of catalysis revealed from the crystal structures of mutants of diaminopimelate epimerase. Biochem.Biophys.Res.Commun., 363, 2007
3EKM	Crystal structure of diaminopimelate epimerase form arabidopsis thaliana in complex with irreversible inhibitor DL-AziDAP 分子名称: (2R,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACID, Diaminopimelate epimerase, chloroplastic 著者 Pillai, B, Moorthie, V.A, Cherney, M.M, van Belkum, M.J, Vederas, J.C, James, M.N.G. 登録日 2008-09-19 公開日 2009-02-17 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of diaminopimelate epimerase from Arabidopsis thaliana, an amino acid racemase critical for L-lysine biosynthesis. J.Mol.Biol., 385, 2009
6VCM	Crystal structure of E.coli RppH-DapF in complex with GTP, Mg2+ and F- 分子名称: CHLORIDE ION, Diaminopimelate epimerase, FLUORIDE ION, ... 著者 Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A. 登録日 2019-12-21 公開日 2020-02-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH. Nucleic Acids Res., 48, 2020
2OTN	Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis 分子名称: Diaminopimelate epimerase 著者 Matho, M.H, Fukuda, K, Santelli, E, Jaroszewski, L, Liddington, R.C, Roper, D. 登録日 2007-02-08 公開日 2008-03-04 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure and inhibition of a catalytically active form of diaminopimelate epimerase (DapF)from Bacillus anthracis To be Published
5M47	Crystal structure of DapF from Corynebacterium glutamicum in complex with D,L-diaminopimelate 分子名称: 2,6-DIAMINOPIMELIC ACID, Diaminopimelate epimerase 著者 Sagong, H.-Y, Kim, K.-J. 登録日 2016-10-18 公開日 2016-11-02 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Structural basis for redox sensitivity in Corynebacterium glutamicum diaminopimelate epimerase: an enzyme involved in l-lysine biosynthesis. Sci Rep, 7, 2017
3FVE	Crystal structure of diaminopimelate epimerase Mycobacterium tuberculosis DapF 分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Diaminopimelate epimerase, GLYCEROL 著者 Usha, V, Dover, L.G, Roper, D.I, Futterer, K, Besra, G.S. 登録日 2009-01-15 公開日 2009-01-27 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure of the diaminopimelate epimerase DapF from Mycobacterium tuberculosis Acta Crystallogr.,Sect.D, 65, 2009
6VCK	Crystal structure of E.coli RppH-DapF in complex with GDP, Mg2+ and F- 分子名称: CHLORIDE ION, Diaminopimelate epimerase, FLUORIDE ION, ... 著者 Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A. 登録日 2019-12-21 公開日 2020-02-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH. Nucleic Acids Res., 48, 2020
1BWZ	DIAMINOPIMELATE EPIMERASE FROM HEMOPHILUS INFLUENZAE 分子名称: PROTEIN (DIAMINOPIMELATE EPIMERASE) 著者 Cirilli, M, Zheng, R, Scapin, G, Blanchard, J.S. 登録日 1998-09-29 公開日 1998-12-16 最終更新日 2017-10-04 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase. Biochemistry, 37, 1998
6D13	Crystal structure of E.coli RppH-DapF complex 分子名称: CHLORIDE ION, Diaminopimelate epimerase, IODIDE ION, ... 著者 Gao, A, Serganov, A. 登録日 2018-04-11 公開日 2018-05-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.06 Å) 主引用文献 Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF. Nucleic Acids Res., 46, 2018