PDB: 113 resultsInfo pagesStatus searchChemie searchBIRD

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3NGZ	Crystal structure of RNase T in complex with a non-preferred ssDNA (GC) with one Mg in the active site Descriptor: 5'-D(P*GP*C)-3', COBALT (II) ION, MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NH2	Crystal structure of RNase T in complex with a stem DNA with a 3' overhang Descriptor: 5'-D(P*TP*TP*AP*CP*AP*AP*C)-3', Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NGY	Crystal structure of RNase T (E92G mutant) Descriptor: COBALT (II) ION, Ribonuclease T, his tag sequence Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.204 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NH1	Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site Descriptor: 5'-D(*TP*TP*AP*TP*AP*GP*G)-3', MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.107 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
2XRI	Crystal structure of human ERI1 exoribonuclease 3 Descriptor: ERI1 EXORIBONUCLEASE 3, GLYCEROL, MAGNESIUM ION Authors: Welin, M, Siponen, M.I, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Karlberg, T, Kol, S, Kotenyova, T, Kouznetsova, E, Moche, M, Nyman, T, Persson, C, Schuler, H, Schutz, P, Thorsell, A.G, Tresaugues, L, Van Der Berg, S, Wahlberg, E, Weigelt, J, Nordlund, P. Deposit date: 2010-09-15 Release date: 2010-09-29 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal Structure of Human Eri1 Exoribonuclease 3 To be Published
2XY8	Paramagnetic-based NMR structure of the complex between the N- terminal epsilon domain and the theta domain of the DNA polymerase III Descriptor: CALCIUM ION, DNA POLYMERASE III SUBUNIT EPSILON, DNA POLYMERASE III SUBUNIT THETA Authors: Schmitz, C, Bonvin, A.M.J.J. Deposit date: 2010-11-16 Release date: 2011-06-29 Last modified: 2018-01-17 Method: SOLUTION NMR Cite: Protein-Protein Haddocking Using Exclusively Pseudocontact Shifts. J.Biomol.NMR, 50, 2011
3TR8	Structure of an oligoribonuclease (orn) from Coxiella burnetii Descriptor: ACETATE ION, MAGNESIUM ION, MANGANESE (II) ION, ... Authors: Cheung, J, Franklin, M.C, Rudolph, M, Cassidy, M, Gary, E, Burshteyn, F, Love, J. Deposit date: 2011-09-09 Release date: 2011-09-21 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (2.503 Å) Cite: Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins, 83, 2015
3V9W	Crystal structure of RNase T in complex with a preferred ssDNA (TTA) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*CP*TP*TP*A)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.702 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9S	Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9U	Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.298 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3VA3	Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) Descriptor: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.714 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9X	Crystal structure of RNase T in complex with a preferred ssDNA (AAA) with two Mg in the active site Descriptor: DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3'), MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3VA0	Crystal structure of RNase T in complex with a di-nucleotide product (GG) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*G)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.201 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
4FZX	Exonuclease X in complex with 3' overhanging duplex DNA Descriptor: DNA (5'-D(P*CP*GP*GP*AP*TP*CP*CP*AP*CP*AP*AP*TP*GP*AP*CP*CP*T)-3'), DNA (5'-D(P*GP*TP*CP*AP*TP*TP*GP*TP*GP*GP*AP*TP*CP*CP*GP*AP*G)-3'), Exodeoxyribonuclease 10, ... Authors: Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. Deposit date: 2012-07-08 Release date: 2013-07-03 Last modified: 2013-10-09 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
4FZY	Exonuclease X in complex with 12bp blunt-ended dsDNA Descriptor: DNA (5'-D(*TP*GP*TP*AP*GP*AP*TP*TP*CP*GP*AP*G)-3'), DNA (5'-D(P*CP*TP*CP*GP*AP*AP*TP*CP*TP*AP*CP*A)-3'), Exodeoxyribonuclease 10, ... Authors: Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. Deposit date: 2012-07-08 Release date: 2013-07-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
4FZZ	Exonuclease X in complex with 5' overhanging duplex DNA Descriptor: DNA (5'-D(*GP*TP*CP*AP*TP*TP*GP*TP*GP*GP*AP*TP*CP*CP*GP*AP*G)-3'), Exodeoxyribonuclease 10, SODIUM ION Authors: Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. Deposit date: 2012-07-08 Release date: 2013-07-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
4HCC	The zinc ion bound form of crystal structure of E.coli ExoI-ssDNA complex Descriptor: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Exodeoxyribonuclease I, ISOPROPYL ALCOHOL, ... Authors: Qiu, R, Wei, J, Lou, T, Liu, M, Ji, C, Gong, W. Deposit date: 2012-09-29 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.96 Å) Cite: The structures of Escherichia coli exonuclease I in complex with the single strand DNA To be published
4HCB	The metal-free form of crystal structure of E.coli ExoI-ssDNA complex Descriptor: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Exodeoxyribonuclease I, GLYCEROL, ... Authors: Qiu, R, Wei, J, Lou, T, Liu, M, Ji, C, Gong, W. Deposit date: 2012-09-29 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2 Å) Cite: The structures of Escherichia coli exonuclease I in complex with the single strand DNA To be published
4JRP	Structure of E. coli Exonuclease I in complex with a 5cy-dT13 oligonucleotide Descriptor: 5cy-dT13, Exodeoxyribonuclease I, GLYCEROL, ... Authors: Bell, C.E. Deposit date: 2013-03-21 Release date: 2013-05-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion. Nucleic Acids Res., 41, 2013
4JRQ	Crystal structure of E. coli Exonuclease I in complex with a 5cy-dA13 oligonucleotide Descriptor: 5cy-dA13, Exodeoxyribonuclease I, SULFATE ION Authors: Bell, C.E. Deposit date: 2013-03-21 Release date: 2013-05-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion. Nucleic Acids Res., 41, 2013
4JS4	Crystal structure of E. coli Exonuclease I in complex with a dA16 oligonucleotide Descriptor: Exodeoxyribonuclease I, SULFATE ION, dT16 oligonucleotide Authors: Bell, C.E. Deposit date: 2013-03-22 Release date: 2013-05-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion. Nucleic Acids Res., 41, 2013
4JS5	Crystal structure of E. coli Exonuclease I in complex with a dT13 oligonucleotide Descriptor: Exodeoxyribonuclease I, SULFATE ION, dT13 oligonucleotide Authors: Bell, C.E. Deposit date: 2013-03-22 Release date: 2013-05-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion. Nucleic Acids Res., 41, 2013
4KAZ	Crystal structure of RNase T in complex with a Y structured DNA Descriptor: DNA (5'-D(*TP*TP*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2013-04-23 Release date: 2014-03-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
4KB1	Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT ) Descriptor: Bulge DNA, MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2013-04-23 Release date: 2014-03-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014

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