PDB: 113 resultsInfo pagesStatus searchChemie searchBIRD

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3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9S	Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9U	Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.298 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3VA3	Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) Descriptor: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.714 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
6A46	Structure of TREX2 in complex with a nucleotide (dCMP) Descriptor: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ... Authors: Hsiao, Y.Y. Deposit date: 2018-06-19 Release date: 2018-11-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A4B	Structure of TREX2 in complex with a duplex DNA with 2 nucleotide 3'-overhang Descriptor: DNA (5'-D(*GP*GP*CP*CP*CP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, Three prime repair exonuclease 2 Authors: Hsiao, Y.Y. Deposit date: 2018-06-19 Release date: 2018-11-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
3VA0	Crystal structure of RNase T in complex with a di-nucleotide product (GG) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*G)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.201 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9X	Crystal structure of RNase T in complex with a preferred ssDNA (AAA) with two Mg in the active site Descriptor: DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3'), MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
6A47	Structure of TREX2 in complex with a Y structured dsDNA Descriptor: DNA (5'-D(P*CP*CP*AP*GP*GP*CP*CP*CP*TP*CP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, SODIUM ION, ... Authors: Hsiao, Y.Y. Deposit date: 2018-06-19 Release date: 2018-11-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A4D	pNP-TMP bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: 5'-O-[(S)-hydroxy(4-nitrophenoxy)phosphoryl]thymidine, Oligoribonuclease Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4E	Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: Oligoribonuclease, RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4A	Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: MAGNESIUM ION, Oligoribonuclease Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4F	Separated uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: MANGANESE (II) ION, Oligoribonuclease, URIDINE-5'-MONOPHOSPHATE Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A45	Structure of mouse TREX2 Descriptor: PHOSPHATE ION, Three prime repair exonuclease 2 Authors: Hsiao, Y.Y. Deposit date: 2018-06-19 Release date: 2018-11-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.904 Å) Cite: Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
3V9W	Crystal structure of RNase T in complex with a preferred ssDNA (TTA) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*CP*TP*TP*A)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.702 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
6N6D	Vibrio cholerae Oligoribonuclease bound to pAG Descriptor: Oligoribonuclease, RNA (5'-R(P*AP*G)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.534 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6K	Human REXO2 bound to pAG Descriptor: MALONATE ION, RNA (5'-R(P*AP*G)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.418 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6J	Human REXO2 bound to pAA Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.317 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6F	Vibrio cholerae Oligoribonuclease bound to pGC Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*C)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.735 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6E	Vibrio cholerae Oligoribonuclease bound to pGA Descriptor: RNA (5'-R(P*GP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.578 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6A	Vibrio cholerae Oligoribonuclease bound to pGG Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*G)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.5 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6G	Vibrio cholerae Oligoribonuclease bound to pCG Descriptor: Oligoribonuclease, RNA (5'-R(P*CP*G)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.018 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6C	Vibrio cholerae Oligoribonuclease bound to pAA Descriptor: RNA (5'-R(P*AP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.619 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6H	Vibrio cholerae Oligoribonuclease bound to pCpU Descriptor: Oligoribonuclease, RNA (5'-R(P*CP*U)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.757 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6I	Human REXO2 bound to pGG Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.431 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019

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