PDB: 141 件ウェブページステータス検索Chemie searchBIRD

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5HPA	The crystal of rhodanese domain of YgaP treated with sodium thiosulfate 分子名称: Inner membrane protein YgaP 著者 Eichmann, C, Tzitzilonis, C, Kwiatkowski, W, Riek, R. 登録日 2016-01-20 公開日 2017-02-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 S-Sulfhydration of the Catalytic Cysteine in the Rhodanese Domain of YgaP is a Complex Dynamical Process. To Be Published
5VE4	Crystal structure of persulfide dioxygenase-rhodanese fusion protein with rhodanese domain inactivating mutation (C314S) from Burkholderia phytofirmans 分子名称: BpPRF, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R. 登録日 2017-04-03 公開日 2017-07-19 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation. J. Biol. Chem., 292, 2017
5VE5	Crystal structure of persulfide dioxygenase rhodanese fusion protein with rhodanese domain inactivating mutation (C314S) from Burkholderia phytofirmans in complex with glutathione 分子名称: BpPRF, CHLORIDE ION, FE (III) ION, ... 著者 Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R. 登録日 2017-04-03 公開日 2017-07-19 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation. J. Biol. Chem., 292, 2017
5VE3	Crystal structure of wild-type persulfide dioxygenase-rhodanese fusion protein from Burkholderia phytofirmans 分子名称: BpPRF, FE (III) ION 著者 Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R. 登録日 2017-04-03 公開日 2017-07-19 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.793 Å) 主引用文献 Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation. J. Biol. Chem., 292, 2017
5WQK	Crystal structure of 3-Mercaptopyruvate Sulfurtransferase(3MST) in complex with compound1 分子名称: 4-methyl-2-(2-naphthalen-1-yl-2-oxidanylidene-ethyl)sulfanyl-1~{H}-pyrimidin-6-one, SODIUM ION, Sulfurtransferase 著者 Suwanai, Y, Toma-Fukai, S, Shimizu, T. 登録日 2016-11-27 公開日 2017-09-06 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Discovery and Mechanistic Characterization of Selective Inhibitors of H2S-producing Enzyme: 3-Mercaptopyruvate Sulfurtransferase (3MST) Targeting Active-site Cysteine Persulfide Sci Rep, 7, 2017
5WQJ	Crystal structure of 3-Mercaptopyruvate Sulfurtransferase(3MST) in complex with compound1 分子名称: 2-[2-[(4-oxidanylidene-3~{H}-quinazolin-2-yl)sulfanyl]ethanoylamino]thiophene-3-carboxamide, SODIUM ION, Sulfurtransferase 著者 Suwanai, Y, Toma-Fukai, S, Shimizu, T. 登録日 2016-11-27 公開日 2017-09-06 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Discovery and Mechanistic Characterization of Selective Inhibitors of H2S-producing Enzyme: 3-Mercaptopyruvate Sulfurtransferase (3MST) Targeting Active-site Cysteine Persulfide Sci Rep, 7, 2017
6BEV	Human Single Domain Sulfurtranferase TSTD1 分子名称: Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 著者 Motl, N, Akey, D.L, Smith, J.L, Banerjee, R. 登録日 2017-10-25 公開日 2018-01-24 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.043 Å) 主引用文献 Thiosulfate sulfurtransferase-like domain-containing 1 protein interacts with thioredoxin. J. Biol. Chem., 293, 2018
6HIZ	Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the head of the small mitoribosomal subunit 分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (143-MER), ... 著者 Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, A, Schneider, A, Ban, N. 登録日 2018-08-31 公開日 2018-09-26 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes. Science, 362, 2018
6HIW	Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete small mitoribosomal subunit in complex with mt-IF-3 分子名称: 9S rRNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Ramrath, D, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, D, Schneider, A, Ban, N. 登録日 2018-08-31 公開日 2018-09-26 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.37 Å) 主引用文献 Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes. Science, 362, 2018
6HIV	Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome 分子名称: 12S rRNA, 50S ribosomal protein L13, putative, ... 著者 Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boerhringer, D, Schneider, A, Ban, N. 登録日 2018-08-31 公開日 2018-10-03 最終更新日 2018-11-07 実験手法 ELECTRON MICROSCOPY (7.8 Å) 主引用文献 Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes. Science, 362, 2018
6MXV	The crystal structure of a rhodanese-like family protein from Francisella tularensis subsp. tularensis SCHU S4 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, DODECAETHYLENE GLYCOL, ... 著者 Tan, K, Skarina, T, Di Leo, R, Savchenko, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2018-10-31 公開日 2018-11-21 最終更新日 2019-12-18 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 The crystal structure of a rhodanese-like family protein from Francisella tularensis subsp. tularensis SCHU S4 To Be Published
6H99	Crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola in persulfide form. 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Leisinger, F, Burn, R, Meury, M, Lukat, P, Seebeck, F.P. 登録日 2018-08-03 公開日 2019-06-12 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis. J.Am.Chem.Soc., 141, 2019
6H98	Native crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola. 分子名称: CHLORIDE ION, ETHANOL, FORMIC ACID, ... 著者 Leisinger, F, Burn, R, Meury, M, Lukat, P, Seebeck, F.P. 登録日 2018-08-03 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis. J.Am.Chem.Soc., 141, 2019
6H9A	Crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola in complex with natural substrate trimethyl histidine. 分子名称: CHLORIDE ION, N,N,N-trimethyl-histidine, SODIUM ION, ... 著者 Leisinger, F, Burn, R, Meury, M, Lukat, P, Seebeck, F.P. 登録日 2018-08-03 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.831 Å) 主引用文献 Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis. J.Am.Chem.Soc., 141, 2019
6SG9	Head domain of the mt-SSU assemblosome from Trypanosoma brucei 分子名称: 9S rRNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Saurer, M, Ramrath, D.J.F, Niemann, M, Calderaro, S, Prange, C, Mattei, S, Scaiola, A, Leitner, A, Bieri, P, Horn, E.K, Leibundgut, M, Boehringer, D, Schneider, A, Ban, N. 登録日 2019-08-03 公開日 2019-09-18 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery. Science, 365, 2019
6SGB	mt-SSU assemblosome of Trypanosoma brucei 分子名称: 9S rRNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Saurer, M, Ramrath, D.J.F, Niemann, M, Calderaro, S, Prange, C, Mattei, S, Scaiola, A, Leitner, A, Bieri, P, Horn, E.K, Leibundgut, M, Boehringer, D, Schneider, A, Ban, N. 登録日 2019-08-03 公開日 2019-09-25 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery. Science, 365, 2019
6K6R	Crystal structure of Saccharomyces cerevisiae single domain sulfurtranferase RDL2 分子名称: Thiosulfate sulfurtransferase RDL2, mitochondrial 著者 Li, H.J, Wang, Q.D. 登録日 2019-06-04 公開日 2019-11-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.471 Å) 主引用文献 Saccharomyces cerevisiaeRhodanese RDL2 Uses the ArgResidue of the Active-Site Loop for Thiosulfate Decomposition Antioxidants, 10, 2021
6JL7	crystal structure of TBC1D23 N terminal domain 分子名称: TBC1 domain family member 23 著者 Sun, Q, Hu, W, Jia, D. 登録日 2019-03-04 公開日 2020-03-04 最終更新日 2021-09-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of TBC1D23 N-terminus reveals a novel role for rhodanese domain. Plos Biol., 18, 2020
6PFZ	Structure of a NAD-Dependent Persulfide Reductase from A. fulgidus 分子名称: CALCIUM ION, COENZYME A, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Sazinsky, M.H, Shabdar, S, Garcia-Constineiras, A, Crane III, E.J. 登録日 2019-06-23 公開日 2020-07-01 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.10003877 Å) 主引用文献 Structural and Kinetic Characterization of Hyperthermophilic NADH-Dependent Persulfide Reductase from Archaeoglobus fulgidus . Archaea, 2021, 2021
6YUB	Crystal structure of Uba4 from Chaetomium thermophilum 分子名称: Adenylyltransferase and sulfurtransferase uba4, ZINC ION 著者 Grudnik, P, Pabis, M, Ethiraju Ravichandran, K, Glatt, S. 登録日 2020-04-26 公開日 2020-07-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.195 Å) 主引用文献 Molecular basis for the bifunctional Uba4-Urm1 sulfur-relay system in tRNA thiolation and ubiquitin-like conjugation. Embo J., 39, 2020
6YJ5	Focused refinement cryo-EM structure of the yeast mitochondrial complex I sub-stoichiometric sulfur transferase subunit 分子名称: Rhodanese-like domain-containing protein 著者 Hirst, J, Grba, D. 登録日 2020-04-02 公開日 2020-08-12 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Intrinsic curvature of the HIV-1 CA hexamer underlies capsid topology and interaction with cyclophilin A. Nat.Struct.Mol.Biol., 27, 2020
6KTW	structure of EanB with hercynine 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ... 著者 Wu, L, Liu, P.H, Zhou, J.H. 登録日 2019-08-29 公開日 2020-08-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.931 Å) 主引用文献 Single-Step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in the Anaerobic Ergothioneine Biosynthesis Acs Catalysis, 10, 2020
6KU2	The structure of EanB/Y353A complex with ergothioneine covalent linked with persulfide Cys412 分子名称: 1,2-ETHANEDIOL, BROMIDE ION, CHLORIDE ION, ... 著者 Wu, L, Liu, P.H, Zhou, J.H. 登録日 2019-08-30 公開日 2020-08-26 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 Single-Step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in the Anaerobic Ergothioneine Biosynthesis Acs Catalysis, 10, 2020
6KTZ	The complex structure of EanB/C412S with hercynine 分子名称: 1,2-ETHANEDIOL, BROMIDE ION, CHLORIDE ION, ... 著者 Wu, L, Liu, P.H, Zhou, J.H. 登録日 2019-08-29 公開日 2020-08-26 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Single-Step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in the Anaerobic Ergothioneine Biosynthesis Acs Catalysis, 10, 2020
6KTV	The structure of EanB complex with hercynine and persulfided Cys412 分子名称: 1,2-ETHANEDIOL, 1,3-PROPANDIOL, CHLORIDE ION, ... 著者 Wu, L, Liu, P.H, Zhou, J.H. 登録日 2019-08-29 公開日 2020-08-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Single-Step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in the Anaerobic Ergothioneine Biosynthesis Acs Catalysis, 10, 2020

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