PDB: 291 resultsInfo pagesStatus searchChemie searchBIRD

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4FVM	Crystal structure of yeast DNA polymerase alpha Descriptor: DNA polymerase alpha catalytic subunit A Authors: Perera, R.L, Pellegrini, L. Deposit date: 2012-06-29 Release date: 2013-02-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Mechanism for priming DNA synthesis by yeast DNA Polymerase alpha eLife, 2, 2013
4FXD	Crystal structure of yeast DNA polymerase alpha bound to DNA/RNA Descriptor: DNA (5'-D(*TP*TP*TP*TP*CP*GP*CP*TP*GP*CP*CP*CP*GP*CP*CP*T)-3'), DNA polymerase alpha catalytic subunit A, RNA (5'-R(*AP*GP*GP*CP*GP*GP*GP*CP*AP*G)-3') Authors: Perera, R.L, Torella, R, Klinge, S, Kilkenny, M.L, Maman, J.D, Pellegrini, L. Deposit date: 2012-07-03 Release date: 2013-02-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Mechanism for priming DNA synthesis by yeast DNA Polymerase alpha eLife, 2, 2013
4I9Q	Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), ... Authors: Guja, K.E, Jacewicz, A, Trzemecka, A, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M. Deposit date: 2012-12-05 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site. Plos One, 8, 2013
4I9L	Crystal structure of the D714A mutant of RB69 DNA polymerase Descriptor: CHLORIDE ION, DNA polymerase, GUANOSINE, ... Authors: Jacewicz, A, Trzemecka, A, Guja, K.E, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M. Deposit date: 2012-12-05 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site. Plos One, 8, 2013
4J2B	RB69 DNA Polymerase L415G Ternary Complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*T)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics. Nucleic Acids Res., 41, 2013
4J2D	RB69 DNA Polymerase L415K Ternary Complex Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Role of L415 in the Replication of RB69 DNA Polymerase To be Published
4J2E	RB69 DNA Polymerase L415M Ternary Complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*G)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics. Nucleic Acids Res., 41, 2013
4J2A	RB69 DNA Polymerase L415A Ternary Complex Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics. Nucleic Acids Res., 41, 2013
4K8Z	KOD Polymerase in binary complex with dsDNA Descriptor: 1,2-ETHANEDIOL, COBALT HEXAMMINE(III), DNA (5'-D(*AP*AP*AP*TP*TP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3'), ... Authors: Bergen, K, Betz, K, Welte, W, Diederichs, K, Marx, A. Deposit date: 2013-04-19 Release date: 2013-06-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Structures of KOD and 9N DNA Polymerases Complexed with Primer Template Duplex Chembiochem, 14, 2013
4K8X	Binary complex of 9N DNA polymerase in the replicative state Descriptor: 1,2-ETHANEDIOL, 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium, CHLORIDE ION, ... Authors: Betz, K, Diederichs, K, Marx, A. Deposit date: 2013-04-19 Release date: 2013-06-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Structures of KOD and 9N DNA Polymerases Complexed with Primer Template Duplex Chembiochem, 14, 2013
4KHS	Ternary complex of RB69 mutant L415F with a ribonucleotide at 0 position Descriptor: CALCIUM ION, CHLORIDE ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KHQ	Ternary complex of RB69 mutant L415F wit DUMPNPP Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.186 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KHU	Ternary complex of rb69 mutant L415F with a ribonucleotide at -1 position Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KHN	Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), ... Authors: Guja, K.E, Jacewicz, A, Trzemecka, A, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M. Deposit date: 2013-04-30 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.55 Å) Cite: A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site. Plos One, 8, 2013
4KHW	Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.371 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
8XGC	Structure of yeast replisome associated with FACT and histone hexamer, Composite map Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, Chromosome segregation in meiosis protein 3, ... Authors: Li, N, Gao, Y, Yu, D, Gao, N, Zhai, Y. Deposit date: 2023-12-15 Release date: 2024-02-14 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Parental histone transfer caught at the replication fork. Nature, 627, 2024

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