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1O4X	TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT Descriptor: 5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3', 5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3', Transcription factor SOX-2, ... Authors: Clore, G.M, Williams, D.C. Deposit date: 2003-07-17 Release date: 2004-01-27 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex. J.Biol.Chem., 279, 2004
1OCT	CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULES Descriptor: DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3'), PROTEIN (OCT-1 POU DOMAIN) Authors: Klemm, J.D, Rould, M.A, Aurora, R, Herr, W, Pabo, C.O. Deposit date: 1994-05-09 Release date: 1994-08-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules. Cell(Cambridge,Mass.), 77, 1994
1HF0	Crystal structure of the DNA-binding domain of Oct-1 bound to DNA as a dimer Descriptor: DNA 5'-D(*CP*AP*CP*AP*TP*TP*TP*GP*AP*AP*AP*GP*GP* CP*AP*AP*AP*TP*GP*GP*AP*G)-3', DNA 5'-D(*CP*TP*CP*CP*AP*TP*TP*TP*GP*CP*CP*TP*TP* TP*CP*AP*AP*AP*TP*GP*TP*G)-3', OCTAMER-BINDING TRANSCRIPTION FACTOR 1 Authors: Remenyi, A, Tomilin, A, Pohl, E, Scholer, H.R, Wilmanns, M. Deposit date: 2000-11-27 Release date: 2001-11-10 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Differential Dimer Activities of the Transcription Factor Oct-1 by DNA-Induced Interface Swapping Mol.Cell, 8, 2001
1GT0	Crystal structure of a POU/HMG/DNA ternary complex Descriptor: 5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3', 5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3', OCTAMER-BINDING TRANSCRIPTION FACTOR 1, ... Authors: Remenyi, A, Wilmanns, M. Deposit date: 2002-01-09 Release date: 2003-01-30 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal Structure of a POU/Hmg/DNA Ternary Complex Suggests Differential Assembly of Oct4 and Sox2 on Two Enhancers Genes Dev., 17, 2003
5ZJT	Structure of AbdB/Exd complex bound to a 'Black14' DNA sequence Descriptor: DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*AP*AP*AP*TP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*TP*TP*AP*TP*CP*AP*TP*GP*C)-3'), Homeobox protein abdominal-B, ... Authors: Zeiske, T, Baburajendran, N, Kaczynska, A, Mann, R, Honig, B, Shapiro, L, Palmer, A.G. Deposit date: 2018-03-22 Release date: 2018-08-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep, 24, 2018
5ZJS	Structure of AbdB/Exd complex bound to a 'Blue14' DNA sequence Descriptor: DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*TP*AP*AP*TP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*TP*AP*AP*TP*CP*AP*TP*GP*C)-3'), Homeobox protein abdominal-B, ... Authors: Baburajendran, N, Zeiske, T, Kaczynska, A, Mann, R, Honig, B, Shapiro, L, Palmer, A.G. Deposit date: 2018-03-22 Release date: 2018-08-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.896 Å) Cite: Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep, 24, 2018
5ZJR	Structure of AbdB/Exd complex bound to a 'Magenta14' DNA sequence Descriptor: DNA (5'-D(*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*C)-3'), Homeobox protein abdominal-B, ... Authors: Zeiske, T, Baburajendran, N, Kaczynska, A, Mann, R, Honig, B, Shapiro, L, Palmer, A.G. Deposit date: 2018-03-22 Release date: 2018-08-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (3.03 Å) Cite: Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep, 24, 2018
5ZJQ	Structure of AbdB/Exd complex bound to a 'Red14' DNA sequence Descriptor: DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*TP*TP*AP*TP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*AP*TP*GP*C)-3'), Homeobox protein abdominal-B, ... Authors: Baburajendran, N, Zeiske, T, Kaczynska, A, Mann, R, Honig, B, Shapiro, L, Palmer, A.G. Deposit date: 2018-03-22 Release date: 2018-08-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.443 Å) Cite: Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep, 24, 2018
2D5V	Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter Descriptor: 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', ACETATE ION, ... Authors: Iyaguchi, D, Yao, M, Watanabe, N, Nishihira, J, Tanaka, I. Deposit date: 2005-11-07 Release date: 2006-12-05 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2 Å) Cite: DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6 Structure, 15, 2007
8OSB	TWIST1-TCF4-ALX4 complex on specific DNA Descriptor: DNA (25-MER), Homeobox protein aristaless-like 4, Transcription factor 4, ... Authors: Morgunova, E, Kim, S, Popov, A, Wysocka, J, Taipale, J. Deposit date: 2023-04-18 Release date: 2024-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.9 Å) Cite: DNA-guided transcription factor cooperativity shapes face and limb mesenchyme. Cell, 187, 2024
8OTS	OCT4 and MYC-MAX co-bound to a nucleosome Descriptor: DNA (127-MER), Green fluorescent protein,POU domain, class 5, ... Authors: Michael, A.K, Stoos, L, Kempf, G, Cavadini, S, Thoma, N. Deposit date: 2023-04-21 Release date: 2023-05-24 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Cooperation between bHLH transcription factors and histones for DNA access. Nature, 619, 2023

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