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1FI7
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Solution structure of the imidazole complex of cytochrome C
分子名称: CYTOCHROME C, HEME C, IMIDAZOLE
著者Banci, L, Bertini, I, Liu, G, Lu, J, Reddig, T, Tang, W, Wu, Y, Zhu, D.
登録日2000-08-03
公開日2000-08-23
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Effects of extrinsic imidazole ligation on the molecular and electronic structure of cytochrome c
J.Biol.Inorg.Chem., 6, 2001
1FJ0
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BU of 1fj0 by Molmil
STRUCTURE DETERMINATION OF THE FERRICYTOCHROME C2 FROM RHODOPSEUDOMONAS PALUSTRIS
分子名称: CYTOCHROME C2, GLYCEROL, HEME C, ...
著者Geremia, S.
登録日2000-08-07
公開日2002-01-16
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Cleavage of the iron-methionine bond in c-type cytochromes: Crystal structure of oxidized and reduced cytochrome c(2) from Rhodopseudomonas palustris and its ammonia complex.
Protein Sci., 11, 2002
1FI3
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SOLUTION STRUCTURE OF THE M61H MUTANT OF PSEUDOMONAS STUTZERI SUBSTRAIN ZOBELL FERROCYTOCHROME C-551
分子名称: CYTOCHROME C-551, HEME C
著者Miller, G.T, Hardman, J.K, Timkovich, R.
登録日2000-08-03
公開日2001-03-14
最終更新日2021-11-03
実験手法SOLUTION NMR
主引用文献Solution conformation of the Met 61 to His 61 mutant of Pseudomonas stutzeri ZoBell ferrocytochrome c-551.
Biophys.J., 80, 2001
1FI9
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SOLUTION STRUCTURE OF THE IMIDAZOLE COMPLEX OF CYTOCHROME C
分子名称: CYTOCHROME C, HEME C, IMIDAZOLE
著者Banci, L, Bertini, I, Liu, G, Lu, J, Reddig, T, Tang, W, Wu, Y, Zhu, D.
登録日2000-08-03
公開日2000-08-23
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Effects of extrinsic imidazole ligation on the molecular and electronic structure of cytochrome c
J.Biol.Inorg.Chem., 6, 2001
1FHB
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BU of 1fhb by Molmil
THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE CYANIDE ADDUCT OF A MET80ALA VARIANT OF SACCHAROMYCES CEREVISIAE ISO-1-CYTOCHROME C. IDENTIFICATION OF LIGAND-RESIDUE INTERACTIONS IN THE DISTAL HEME CAVITY
分子名称: CYANIDE ION, FERRICYTOCHROME C, PROTOPORPHYRIN IX CONTAINING FE
著者Banci, L, Bertini, I, Bren, K.L, Gray, H.B, Sompornpisut, P, Turano, P.
登録日1995-06-16
公開日1995-09-15
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Three-Dimensional Solution Structure of the Cyanide Adduct of a met80Ala Variant of Saccharomyces Cerevisiae Iso-1-Cytochrome C. Identification of Ligand-Residue Interactions in the Distal Heme Cavity
Biochemistry, 34, 1995
1GIW
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BU of 1giw by Molmil
SOLUTION STRUCTURE OF REDUCED HORSE HEART CYTOCHROME C, NMR, MINIMIZED AVERAGE STRUCTURE
分子名称: CYTOCHROME C, HEME C
著者Banci, L, Bertini, I, Huber, J.G, Spyroulias, G.A, Turano, P.
登録日1998-06-17
公開日1998-12-09
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution structure of reduced horse heart cytochrome c.
J.Biol.Inorg.Chem., 4, 1999
1HH7
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BU of 1hh7 by Molmil
REFINED CRYSTAL STRUCTURE OF CYTOCHROME C2 FROM RHODOPSEUDOMONAS PALUSTRIS AT 1.4 ANGSTROM RESOLUTION
分子名称: AMMONIA, CYTOCHROME C2, HEME C, ...
著者Garau, G, Geremia, S.
登録日2000-12-21
公開日2001-01-02
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystallization and Preliminary X-Ray Analysis of Two Ph-Dependent Forms of Cytochrome C2 from Rhodopseudomonas Palustris
Acta Crystallogr.,Sect.D, 56, 2000
8JEK
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BU of 8jek by Molmil
Cryo-EM Structure of K-ferricyanide Oxidized Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus
分子名称: FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Fructose dehydrogenase cytochrome subunit, ...
著者Suzuki, Y, Miyata, T, Makino, F, Tanaka, H, Namba, K, Sowa, K, Kitazumi, Y, Shirai, O.
登録日2023-05-16
公開日2023-10-25
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Essential Insight of Direct Electron Transfer-Type Bioelectrocatalysis by Membrane-Bound d-Fructose Dehydrogenase with Structural Bioelectrochemistry.
Acs Catalysis, 13, 2023
8JEJ
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Cryo-EM Structure of Na-dithionite Reduced Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus
分子名称: FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Fructose dehydrogenase cytochrome subunit, ...
著者Suzuki, Y, Miyata, T, Makino, F, Tanaka, H, Namba, K, Sowa, K, Kitazumi, Y, Shirai, O.
登録日2023-05-16
公開日2023-10-25
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Essential Insight of Direct Electron Transfer-Type Bioelectrocatalysis by Membrane-Bound d-Fructose Dehydrogenase with Structural Bioelectrochemistry.
Acs Catalysis, 13, 2023
4GED
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BU of 4ged by Molmil
Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex
分子名称: Ascorbate peroxidase, Cytochrome c, HEME C, ...
著者Jasion, V.S, Doukov, T, Pineda, S.H, Li, H, Poulos, T.L.
登録日2012-08-01
公開日2012-10-24
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Crystal structure of the Leishmania major peroxidase-cytochrome c complex.
Proc.Natl.Acad.Sci.USA, 109, 2012
6P41
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Yeast cytochrome c peroxidase (W191Y:L232E) in complex with iso-1 cytochrome c
分子名称: Cytochrome c iso-1, Cytochrome c peroxidase, mitochondrial, ...
著者Yee, E.F, Crane, B.R.
登録日2019-05-25
公開日2019-10-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Tuning Radical Relay Residues by Proton Management Rescues Protein Electron Hopping.
J.Am.Chem.Soc., 141, 2019
6P43
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BU of 6p43 by Molmil
Yeast cytochrome c peroxidase in complex with iso-1 cytochrome c (Y48K)
分子名称: Cytochrome c iso-1, Cytochrome c peroxidase, mitochondrial, ...
著者Yee, E.F, Crane, B.R.
登録日2019-05-25
公開日2019-10-23
最終更新日2019-11-20
実験手法X-RAY DIFFRACTION (1.913 Å)
主引用文献Tuning Radical Relay Residues by Proton Management Rescues Protein Electron Hopping.
J.Am.Chem.Soc., 141, 2019
6P42
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BU of 6p42 by Molmil
Yeast cytochrome c peroxidase (W191Y:L232H) in complex with iso-1 cytochrome c
分子名称: Cytochrome c iso-1, Cytochrome c peroxidase, mitochondrial, ...
著者Yee, E.F, Crane, B.R.
登録日2019-05-25
公開日2019-10-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.905 Å)
主引用文献Tuning Radical Relay Residues by Proton Management Rescues Protein Electron Hopping.
J.Am.Chem.Soc., 141, 2019
6HWH
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BU of 6hwh by Molmil
Structure of a functional obligate respiratory supercomplex from Mycobacterium smegmatis
分子名称: CARDIOLIPIN, COPPER (II) ION, Co-purified unknown peptide built as polyALA, ...
著者Wiseman, B, Nitharwal, R.G, Fedotovskaya, O, Schafer, J, Guo, H, Kuang, Q, Benlekbir, S, Sjostrand, D, Adelroth, P, Rubinstein, J.L, Brzezinski, P, Hogbom, M.
登録日2018-10-12
公開日2018-11-07
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure of a functional obligate complex III2IV2respiratory supercomplex from Mycobacterium smegmatis.
Nat. Struct. Mol. Biol., 25, 2018
5OCB
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BU of 5ocb by Molmil
Crystal structure of nitric oxide bound D97N mutant of three-domain heme-Cu nitrite reductase from Ralstonia pickettii
分子名称: COPPER (II) ION, HEME C, NITRIC OXIDE, ...
著者Dong, J, Sasaki, D, Eady, R, Antonyuk, S.V, Hasnain, S.S.
登録日2017-06-30
公開日2018-06-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Activation of redox tyrosine switch is required for ligand binding at the catalytic site in heme-cu nitrite reductases
To be published
5GUX
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BU of 5gux by Molmil
Cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with xenon
分子名称: Antibody fab fragment heavy chain, Antibody fab fragment light chain, CALCIUM ION, ...
著者Ishii, S, Terasaka, E, Sugimoto, H, Shiro, Y, Tosha, T.
登録日2016-08-31
公開日2017-08-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Dynamics of nitric oxide controlled by protein complex in bacterial system.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5OCF
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BU of 5ocf by Molmil
Crystal structure of nitric oxide bound to three-domain heme-Cu nitrite reductase from Ralstonia pickettii
分子名称: COPPER (II) ION, HEME C, NITRIC OXIDE, ...
著者Dong, J, Sasaki, D, Eady, R, Antonyuk, S.V, Hasnain, S.S.
登録日2017-06-30
公開日2018-06-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Activation of redox tyrosine switch is required for ligand binding at the catalytic site in heme-cu nitrite reductases
To be published
5GUW
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BU of 5guw by Molmil
Complex of Cytochrome cd1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas aeruginosa
分子名称: CALCIUM ION, CHLORIDE ION, FE (III) ION, ...
著者Terasaka, E, Sugimoto, H, Shiro, Y, Tosha, T.
登録日2016-08-31
公開日2017-08-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Dynamics of nitric oxide controlled by protein complex in bacterial system
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5OBO
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BU of 5obo by Molmil
Crystal structure of nitrite bound D97N mutant of three-domain heme-Cu nitrite reductase from Ralstonia pickettii
分子名称: COPPER (II) ION, GLYCEROL, HEME C, ...
著者Dong, J, Sasaki, D, Eady, R, Antonyuk, S.V, Hasnain, S.S.
登録日2017-06-28
公開日2018-08-01
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Activation of redox tyrosine switch is required for ligand binding at the catalytic site in heme-cu nitrite reductases
To be published
4XYD
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BU of 4xyd by Molmil
Nitric oxide reductase from Roseobacter denitrificans (RdNOR)
分子名称: CALCIUM ION, COPPER (II) ION, FE (III) ION, ...
著者Crow, A.
登録日2015-02-02
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structure of the Membrane-intrinsic Nitric Oxide Reductase from Roseobacter denitrificans.
Biochemistry, 55, 2016
5IY5
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BU of 5iy5 by Molmil
Electron transfer complex of cytochrome c and cytochrome c oxidase at 2.0 angstrom resolution
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Shimada, S, Baba, J, Aoe, S, Shimada, A, Yamashita, E, Tsukihara, T.
登録日2016-03-24
公開日2017-01-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Complex structure of cytochrome c-cytochrome c oxidase reveals a novel protein-protein interaction mode
EMBO J., 36, 2017
5JUY
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BU of 5juy by Molmil
Active human apoptosome with procaspase-9
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Apoptotic protease-activating factor 1, Caspase-9, ...
著者Cheng, T.C, Hong, C, Akey, I.V, Yuan, S, Akey, C.W.
登録日2016-05-10
公開日2016-10-19
最終更新日2019-12-25
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献A near atomic structure of the active human apoptosome.
Elife, 5, 2016
4NFG
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BU of 4nfg by Molmil
K13R mutant of horse cytochrome c and yeast cytochrome c peroxidase complex
分子名称: Cytochrome c, Cytochrome c peroxidase, mitochondrial, ...
著者Meulenbroek, E.M, Bashir, Q, Ubbink, M, Pannu, N.S.
登録日2013-10-31
公開日2014-09-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Engineering specificity in a dynamic protein complex with a single conserved mutation.
Febs J., 281, 2014
7E1V
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BU of 7e1v by Molmil
Cryo-EM structure of apo hybrid respiratory supercomplex consisting of Mycobacterium tuberculosis complexIII and Mycobacterium smegmatis complexIV
分子名称: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, CARDIOLIPIN, ...
著者Zhou, S, Wang, W, Gao, Y, Gong, H, Rao, Z.
登録日2021-02-03
公開日2021-10-13
最終更新日2022-07-27
実験手法ELECTRON MICROSCOPY (2.68 Å)
主引用文献Structure of Mycobacterium tuberculosis cytochrome bcc in complex with Q203 and TB47, two anti-TB drug candidates.
Elife, 10, 2021
7E1W
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Cryo-EM structure of hybrid respiratory supercomplex consisting of Mycobacterium tuberculosis complexIII and Mycobacterium smegmatis complexIV in the presence of Q203
分子名称: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, 6-chloranyl-2-ethyl-N-[[4-[4-[4-(trifluoromethyloxy)phenyl]piperidin-1-yl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide, ...
著者Zhou, S, Wang, W, Gao, Y, Gong, H, Rao, Z.
登録日2021-02-03
公開日2021-10-27
最終更新日2022-07-27
実験手法ELECTRON MICROSCOPY (2.67 Å)
主引用文献Structure of Mycobacterium tuberculosis cytochrome bcc in complex with Q203 and TB47, two anti-TB drug candidates.
Elife, 10, 2021

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