PDB: 44643 件ウェブページステータス検索Chemie searchBIRD

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8VF9	Binary DNA Polymerase Beta bound to DNA containing primer terminal dA base-paired with FapydG 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*CP*(FAP)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Oden, P.N, Ryan, B.J, Freudenthal, B.D. 登録日 2023-12-21 公開日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 2024
8VFH	Ternary DNA Polymerase Beta bound to DNA containing primer terminal FapydG base-paired with a dC 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*CP*GP*AP*CP*GP*CP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(FAP))-3'), ... 著者 Oden, P.N, Ryan, B.J, Freudenthal, B.D. 登録日 2023-12-21 公開日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 2024
8VFC	Binary DNA Polymerase Beta bound to DNA containing primer terminal T base-paired with FapydG 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*(FAP)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Oden, P.N, Ryan, B.J, Freudenthal, B.D. 登録日 2023-12-21 公開日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.48 Å) 主引用文献 Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 2024
8VFE	Binary DNA Polymerase Beta bound to DNA containing primer terminal FapydG base-paired with a T 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(FAP))-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Oden, P.N, Ryan, B.J, Freudenthal, B.D. 登録日 2023-12-21 公開日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 2024
8VFJ	Polymerase Beta Host Guest Complex Containing FapydG base paired with TMP 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*(FAP)P*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*TP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Oden, P.N, Ryan, B.J, Freudenthal, B.D. 登録日 2023-12-21 公開日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.14 Å) 主引用文献 Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 2024
8VFB	Ternary DNA Polymerase Beta bound to DNA containing primer terminal dA base-paired with FapydG 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*CP*(FAP)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Oden, P.N, Ryan, B.J, Freudenthal, B.D. 登録日 2023-12-21 公開日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 2024
8RJK	Pseudoatomic model of a second-order Sierpinski triangle formed by the citrate synthase from Synechococcus elongatus 分子名称: Citrate synthase 著者 Lo, Y.K, Bohn, S, Sendker, F.L, Schuller, J.M, Hochberg, G. 登録日 2023-12-21 公開日 2024-02-28 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (5.91 Å) 主引用文献 Emergence of fractal geometries in the evolution of a metabolic enzyme. Nature, 628, 2024
8RJC	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Lewis, A.J.O, Hegde, R.S. 登録日 2023-12-20 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (2.90061 Å) 主引用文献 Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 To Be Published
8RJB	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Lewis, A.J.O, Hegde, R.S. 登録日 2023-12-20 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (2.69243 Å) 主引用文献 Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 To Be Published
8RJD	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Lewis, A.J.O, Hegde, R.S. 登録日 2023-12-20 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (2.78574 Å) 主引用文献 Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2 To Be Published
8XI6	SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Ishimaru, H, Nishimura, M, Shigematsu, H, Marini, M.I, Hasegawa, N, Takamiya, R, Iwata, S, Mori, Y. 登録日 2023-12-19 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.3 Å) 主引用文献 Epitopes of an antibody that neutralizes a wide range of SARS-CoV-2 variants in a conserved subdomain 1 of the spike protein. J.Virol., 2024
8VDW	X-Ray Crystal Structure of the biotin synthase from V. parvula 分子名称: 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID, Biotin synthase, Fe4 H S5, ... 著者 Lachowicz, J.C, Grove, T.L. 登録日 2023-12-18 公開日 2024-01-24 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.807 Å) 主引用文献 Discovery of a Biotin Synthase That Utilizes an Auxiliary 4Fe-5S Cluster for Sulfur Insertion. J.Am.Chem.Soc., 146, 2024
8RHQ	Crystal structure of HLA-A*11:01 in complex with SVLNDIFSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984) 分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, CHLORIDE ION, ... 著者 Ahn, Y.M, Maddumage, J.C, Szeto, C, Gras, S. 登録日 2023-12-16 公開日 2024-05-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The impact of SARS-CoV-2 spike mutation on peptide presentation is HLA allomorph-specific Curr Res Struct Biol, 2024
8XGC	Structure of yeast replisome associated with FACT and histone hexamer, Composite map 分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, Chromosome segregation in meiosis protein 3, ... 著者 Li, N, Gao, Y, Yu, D, Gao, N, Zhai, Y. 登録日 2023-12-15 公開日 2024-02-14 最終更新日 2024-04-10 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Parental histone transfer caught at the replication fork. Nature, 627, 2024
8RHK	Yeast 20S proteasome in complex with a linear oxindole epoxyketone (compound 6) 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Linear oxindole epoxyketone, ... 著者 Goetz, M.G, Godwin, K, Price, R, Dorn, R, Merrill-Steskal, G, Hansen, H, Klemmer, W, Produturi, G, Rocha, M, Palmer, M, Molacek, L, Strater, Z, Groll, M. 登録日 2023-12-15 公開日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Macrocyclic Oxindole Peptide Epoxyketones-A Comparative Study of Macrocyclic Inhibitors of the 20S Proteasome. Acs Med.Chem.Lett., 15, 2024
8RHL	Yeast 20S proteasome in complex with a linear biarylether epoxyketone (compound 15a) 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Linear biarylether epoxyketone, ... 著者 Goetz, M.G, Godwin, K, Price, R, Dorn, R, Merrill-Steskal, G, Hansen, H, Klemmer, W, Produturi, G, Rocha, M, Palmer, M, Molacek, L, Strater, Z, Groll, M. 登録日 2023-12-15 公開日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Macrocyclic Oxindole Peptide Epoxyketones-A Comparative Study of Macrocyclic Inhibitors of the 20S Proteasome. Acs Med.Chem.Lett., 15, 2024
8RHJ	Yeast 20S proteasome in complex with a macrocyclic oxindole epoxyketone (compound 5) 分子名称: CHLORIDE ION, MAGNESIUM ION, Macrocyclic oxindole epoxyketone, ... 著者 Goetz, M.G, Godwin, K, Price, R, Dorn, R, Merrill-Steskal, G, Hansen, H, Klemmer, W, Produturi, G, Rocha, M, Palmer, M, Molacek, L, Strater, Z, Groll, M. 登録日 2023-12-15 公開日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Macrocyclic Oxindole Peptide Epoxyketones-A Comparative Study of Macrocyclic Inhibitors of the 20S Proteasome. Acs Med.Chem.Lett., 15, 2024
8RGR	Closed Complex I from murine liver 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... 著者 Vercellino, I, Sazanov, L.A. 登録日 2023-12-14 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 SCAF1 drives the compositional diversity of mammalian respirasomes. Nat.Struct.Mol.Biol., 2024
8RGP	Closed Complex I from murine brain 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... 著者 Vercellino, I, Sazanov, L.A. 登録日 2023-12-14 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 SCAF1 drives the compositional diversity of mammalian respirasomes. Nat.Struct.Mol.Biol., 2024
8RGT	Open Complex I from murine brain 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... 著者 Vercellino, I, Sazanov, L.A. 登録日 2023-12-14 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 SCAF1 drives the compositional diversity of mammalian respirasomes. Nat.Struct.Mol.Biol., 2024
8RGQ	Open Complex I from murine liver 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... 著者 Vercellino, I, Sazanov, L.A. 登録日 2023-12-14 公開日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 SCAF1 drives the compositional diversity of mammalian respirasomes. Nat.Struct.Mol.Biol., 2024
8RGE	Serial synchrotron in plate room temperature structure of Lysozyme. 分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION 著者 Thompson, A.J, Hough, M.A, Sanchez-Weatherby, J, Williams, L.J, Sandy, J, Worrall, J.A.R. 登録日 2023-12-13 公開日 2023-12-27 最終更新日 2024-04-17 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Efficient in situ screening of and data collection from microcrystals in crystallization plates. Acta Crystallogr D Struct Biol, 80, 2024
8REF	Crystal structure of HLA B*13:01 in complex with SVLNDILARL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984) 分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, DI(HYDROXYETHYL)ETHER, ... 著者 Ahn, Y.M, Maddumage, J.C, Szeto, C, Gras, S. 登録日 2023-12-11 公開日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The impact of SARS-CoV-2 spike mutation on peptide presentation is HLA allomorph-specific Curr Res Struct Biol, 2024
8V9H	GES-5-NA-1-157 complex 分子名称: (5R)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid, 1,2-ETHANEDIOL, CALCIUM ION, ... 著者 Smith, C.A, Stewart, N.K, Vakulenko, S.B. 登録日 2023-12-08 公開日 2024-04-03 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Restricted Rotational Flexibility of the C5 alpha-Methyl-Substituted Carbapenem NA-1-157 Leads to Potent Inhibition of the GES-5 Carbapenemase. Acs Infect Dis., 10, 2024
8V9G	GES-5-meropenem complex 分子名称: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, 1,2-ETHANEDIOL, IODIDE ION, ... 著者 Smith, C.A, Stewart, N.K, Vakulenko, S.B. 登録日 2023-12-08 公開日 2024-04-03 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Restricted Rotational Flexibility of the C5 alpha-Methyl-Substituted Carbapenem NA-1-157 Leads to Potent Inhibition of the GES-5 Carbapenemase. Acs Infect Dis., 10, 2024

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