PDB: 44536 resultsInfo pagesStatus searchChemie searchBIRD

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8RDJ	Plastid-encoded RNA polymerase transcription elongation complex (Integrated model) Descriptor: DNA (81-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Webster, M.W, Pramanick, I, Vergara-Cruces, A. Deposit date: 2023-12-08 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (2.62 Å) Cite: Structure of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
8RD8	Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1). Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S30, ... Authors: Helena-Bueno, K, Rybak, M.Y, Gagnon, M.G, Hill, C.H, Melnikov, S.V. Deposit date: 2023-12-07 Release date: 2024-02-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (2.62 Å) Cite: A new family of bacterial ribosome hibernation factors. Nature, 626, 2024
8RCT	Escherichia coli paused disome complex (Rotated disome interface class 2) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-07 Release date: 2024-03-06 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (5.32 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8RCS	Escherichia coli paused disome complex (Rotated disome interface class 1) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-07 Release date: 2024-03-06 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (4.46 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8XB8	The structure of ASFV A137R Descriptor: A137R Authors: Li, C, Song, H, Gao, G.F. Deposit date: 2023-12-06 Release date: 2024-01-31 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: African swine fever virus A137R assembles into a dodecahedron cage. J.Virol., 98, 2024
8V8Y	Crystal Structure of Apo UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli (Orthorhombic P form) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, GLYCEROL, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-12-06 Release date: 2023-12-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal Structure of Apo UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli (Orthorhombic P form) To be published
8RCM	Escherichia coli paused disome complex (Non-rotated disome interface class 2) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-06 Release date: 2024-03-06 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.59 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8RCL	Escherichia coli paused disome complex (Non-rotated disome interface class 1) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-06 Release date: 2024-03-13 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.49 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8V88	Alpha7-nicotinic acetylcholine receptor bound to epibatidine and GAT107 Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (3aR,4S,9bS)-4-(4-bromophenyl)-3a,4,5,9b-tetrahydro-3H-cyclopenta[c]quinoline-8-sulfonamide, (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, ... Authors: Burke, S.M, Noviello, C.M, Hibbs, R.E. Deposit date: 2023-12-05 Release date: 2024-02-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Structural mechanisms of alpha 7 nicotinic receptor allosteric modulation and activation. Cell, 187, 2024
8V8A	Alpha7-nicotinic acetylcholine receptor time resolved bound to epibatidine and PNU-120596 desensitized intermediate state Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Burke, S.M, Noviello, C.M, Hibbs, R.E. Deposit date: 2023-12-05 Release date: 2024-02-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (2.19 Å) Cite: Structural mechanisms of alpha 7 nicotinic receptor allosteric modulation and activation. Cell, 187, 2024
8V89	Alpha7-nicotinic acetylcholine receptor time resolved resting state Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Burke, S.M, Noviello, C.M, Hibbs, R.E. Deposit date: 2023-12-05 Release date: 2024-02-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (2.53 Å) Cite: Structural mechanisms of alpha 7 nicotinic receptor allosteric modulation and activation. Cell, 187, 2024
8RBX	Structure of Integrator-PP2A bound to a paused RNA polymerase II-DSIF-NELF-nucleosome complex Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Fianu, I, Ochmann, M, Walshe, J.L, Cramer, P. Deposit date: 2023-12-05 Release date: 2024-02-07 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis of Integrator-dependent RNA polymerase II termination. Nature, 2024
8V80	Alpha7-nicotinic acetylcholine receptor bound to epibatidine and (-)-TQS Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (3aR,4S,9bS)-4-(naphthalen-1-yl)-3a,4,5,9b-tetrahydro-3H-cyclopenta[c]quinoline-8-sulfonamide, (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, ... Authors: Burke, S.M, Noviello, C.M, Hibbs, R.E. Deposit date: 2023-12-04 Release date: 2024-02-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (2.34 Å) Cite: Structural mechanisms of alpha 7 nicotinic receptor allosteric modulation and activation. Cell, 187, 2024
8V82	Alpha7-nicotinic acetylcholine receptor bound to epibatidine and PNU-120596 Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Burke, S.M, Noviello, C.M, Hibbs, R.E. Deposit date: 2023-12-04 Release date: 2024-02-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (2.61 Å) Cite: Structural mechanisms of alpha 7 nicotinic receptor allosteric modulation and activation. Cell, 187, 2024
8V86	Alpha7-nicotinic acetylcholine receptor bound to GAT107 Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (3aR,4S,9bS)-4-(4-bromophenyl)-3a,4,5,9b-tetrahydro-3H-cyclopenta[c]quinoline-8-sulfonamide, (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, ... Authors: Burke, S.M, Noviello, C.M, Hibbs, R.E. Deposit date: 2023-12-04 Release date: 2024-02-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (2.47 Å) Cite: Structural mechanisms of alpha 7 nicotinic receptor allosteric modulation and activation. Cell, 187, 2024
8RBS	Emiliania huxleyi virus 201 (EhV-201) asymmetrical unit of capsid proteins predicted by AlphaFold2 fitted into the cryo-EM density of EhV-201 virion composite map. Descriptor: Major capsid protein, Penton protein Authors: Homola, M, Buttner, C.R, Fuzik, T, Novacek, J, Chaillet, M, Forster, F, Plevka, P. Deposit date: 2023-12-04 Release date: 2023-12-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (18 Å) Cite: Structure and replication cycle of a virus infecting climate-modulating alga Emiliania huxleyi. Sci Adv, 10, 2024
8RBI	Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124 Descriptor: Alginate lyase, DI(HYDROXYETHYL)ETHER, SODIUM ION Authors: Wilkens, C. Deposit date: 2023-12-04 Release date: 2024-01-17 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124 To Be Published
8V87	60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map) Descriptor: 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 25S ribosomal RNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ... Authors: Cruz, V.E, Weirich, C.S, Peddada, N, Erzberger, J.P. Deposit date: 2023-12-04 Release date: 2024-05-01 Method: ELECTRON MICROSCOPY (2.66 Å) Cite: The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis. Nat Commun, 15, 2024
8V83	60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map) Descriptor: 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ... Authors: Cruz, V.E, Weirich, C.S, Peddada, N, Erzberger, J.P. Deposit date: 2023-12-04 Release date: 2024-05-01 Method: ELECTRON MICROSCOPY (2.53 Å) Cite: The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis. Nat Commun, 15, 2024
8V84	60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map) Descriptor: 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ... Authors: Cruz, V.E, Weirich, C.S, Peddada, N, Erzberger, J.P. Deposit date: 2023-12-04 Release date: 2024-05-01 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis. Nat Commun, 15, 2024
8V6K	Apo-state cryo-EM structure of human TRPV3 in cNW30 nanodiscs Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, Transient receptor potential cation channel subfamily V member 3 Authors: Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I. Deposit date: 2023-12-01 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (2.46 Å) Cite: TRPV3 activation by different agonists accompanied by lipid dissociation from the vanilloid site To Be Published
8V6N	Open-state cryo-EM structure of human TRPV3 in presence of 2-APB in cNW30 nanodiscs Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-aminoethyl diphenylborinate, ARACHIDONIC ACID, ... Authors: Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I. Deposit date: 2023-12-01 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (2.59 Å) Cite: TRPV3 activation by different agonists accompanied by lipid dissociation from the vanilloid site To Be Published
8V6L	Open-state cryo-EM structure of human TRPV3 in presence of tetrahydrocannabivarin (THCV) in cNW30 nanodiscs Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, Tetrahydrocannabivarin, ... Authors: Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I. Deposit date: 2023-12-01 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (3.68 Å) Cite: TRPV3 activation by different agonists accompanied by lipid dissociation from the vanilloid site To Be Published
8V6O	Inactivated-state cryo-EM structure of human TRPV3 in presence of 2-APB in cNW30 nanodiscs Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-aminoethyl diphenylborinate, SODIUM ION, ... Authors: Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I. Deposit date: 2023-12-01 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: TRPV3 activation by different agonists accompanied by lipid dissociation from the vanilloid site To Be Published
8V6M	Inactivated-state cryo-EM structure of human TRPV3 in presence of tetrahydrocannabivarin (THCV) in cNW30 nanodiscs Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, Tetrahydrocannabivarin, ... Authors: Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I. Deposit date: 2023-12-01 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (3.63 Å) Cite: TRPV3 activation by different agonists accompanied by lipid dissociation from the vanilloid site To Be Published

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