PDB Search results for query - Protein Data Bank Japan

PDB: 295 results Info pages Status search Chemie search BIRD

Structure of the complex of type 1 Ribosome inactivating protein with triethanolamine at 1.88 Angstrom resolution
Descriptor:	2,2',2''-NITRILOTRIETHANOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, ...
Authors:	Singh, P.K, Pandey, S, Tyagi, T.K, Singh, A, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2015-07-13
Release date:	2015-08-12
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.88 Å)
Cite:	Structure of the complex of type 1 Ribosome inactivating protein with triethanolamine at 1.88 Angstrom resolution. To Be Published

4ZT8

Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with a pyrimidine base, cytosine at 1.98 A resolution
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 6-AMINOPYRIMIDIN-2(1H)-ONE, GLYCEROL, ...
Authors:	Yamini, S, Pandey, S, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2015-05-14
Release date:	2015-06-03
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.98 Å)
Cite:	Binding and structural studies of the complexes of type 1 ribosome inactivating protein fromMomordica balsaminawith cytosine, cytidine, and cytidine diphosphate. Biochem Biophys Rep, 4, 2015

5CF9

Cleavage of nicotinamide adenine dinucleotide by the ribosome inactivating protein of Momordica charantia - enzyme-NADP+ co-crystallisation.
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, NICOTINAMIDE, Ribosome-inactivating protein momordin I
Authors:	Vinkovic, M, Wood, S.P, Gill, R, Husain, J, Wood, G.E, Dunn, G.
Deposit date:	2015-07-08
Release date:	2015-07-22
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (1.52 Å)
Cite:	Cleavage of nicotinamide adenine dinucleotide by the ribosome-inactivating protein from Momordica charantia. Acta Crystallogr.,Sect.F, 71, 2015

1NIO

Crystal structure of beta-luffin, a ribosome inactivating protein at 2.0A resolution
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, b-luffin
Authors:	Wu, S.
Deposit date:	2002-12-24
Release date:	2003-08-05
Last modified:	2020-07-29
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal structure of beta-luffin, a ribosome-inactivating protein, at 2.0 A resolution. Acta Crystallogr.,Sect.D, 59, 2003

5CSO

Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with a nucleoside, cytidine at 1.78 A resolution
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, GLYCEROL, ...
Authors:	Yamin, S, Pandey, S, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2015-07-23
Release date:	2015-08-12
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.78 Å)
Cite:	Binding and structural studies of the complexes of type 1 ribosome inactivating protein fromMomordica balsaminawith cytosine, cytidine, and cytidine diphosphate. Biochem Biophys Rep, 4, 2015

5CST

Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with a nucleotide, cytidine diphosphate at 1.78 A resolution
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, CYTIDINE-5'-DIPHOSPHATE, GLYCEROL, ...
Authors:	Yamin, S, Pandey, S, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2015-07-23
Release date:	2015-08-12
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.78 Å)
Cite:	Binding and structural studies of the complexes of type 1 ribosome inactivating protein fromMomordica balsaminawith cytosine, cytidine, and cytidine diphosphate. Biochem Biophys Rep, 4, 2015

5DDZ

Crystal structure of the RTA-c10-P2 complex
Descriptor:	60S acidic ribosomal protein P2, Ricin
Authors:	Zhu, Y, Fan, X, Wang, C, Niu, L, Li, X, Teng, M.
Deposit date:	2015-08-25
Release date:	2016-09-07
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Structural insights into the interaction of the ribosomal P stalk protein P2 with a type II ribosome-inactivating protein ricin Sci Rep, 6, 2016

1QCG

LOW TEMPERATURE STRUCTURE OF POKEWEED ANTIVIRAL PROTEIN
Descriptor:	POKEWEED ANTIVIRAL PROTEIN
Authors:	Kurinov, I.V, Myers, D.E, Irvin, J.D, Uckun, F.M.
Deposit date:	1999-05-04
Release date:	1999-09-15
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	X-ray crystallographic analysis of the structural basis for the interactions of pokeweed antiviral protein with its active site inhibitor and ribosomal RNA substrate analogs. Protein Sci., 8, 1999

1QI7

THE CRYSTAL STRUCTURE AT 2.0 A OF SAPORIN SO6, A RIBOSOME INACTIVATING PROTEIN FROM SAPONARIA OFFICINALIS
Descriptor:	PROTEIN (N-GLYCOSIDASE), SULFATE ION
Authors:	Savino, C, Federici, L, Ippoliti, R, Lendaro, E, Tsernoglou, D.
Deposit date:	1999-06-08
Release date:	2000-06-05
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	The crystal structure of saporin SO6 from Saponaria officinalis and its interaction with the ribosome. FEBS Lett., 470, 2000

4JTP

Crystal structure of Ribosome inactivating protein from Momordica balsamina complexed with Ascorbic acid at 1.85 Angstrom resolution
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, ASCORBIC ACID, rRNA N-glycosidase
Authors:	Pandey, S, Bhushan, A, Singh, A, Tyagi, T.K, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2013-03-24
Release date:	2013-04-17
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Crystal structure of Ribosome inactivating protein from Momordica balsamina complexed with Ascorbic acid at 1.85 Angstrom resolution TO BE PUBLISHED

4KPV

Crystal structure of the complex of ribosome inactivating protein from Momordica balsamina with Pyrimidine-2,4(1H,3H)-dione at 2.57 A resolution
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, URACIL, rRNA N-glycosidase
Authors:	Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2013-05-14
Release date:	2013-05-29
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.57 Å)
Cite:	Crystal structure of the complex of ribosome inactivating protein from Momordica balsamina with Pyrimidine-2,4(1H,3H)-dione at 2.57 A resolution To be Published

4KUC

Crystal structure of ricin-A chain in complex with the antibody 6C2
Descriptor:	Ricin, mAb6c2 fab-Heavy chain, mAb6c2 fab-Light chain
Authors:	Zhu, Y, Li, X, Teng, M.
Deposit date:	2013-05-21
Release date:	2013-07-17
Method:	X-RAY DIFFRACTION (2.787 Å)
Cite:	Structural insights into the neutralization mechanism of mAb 6C2 against ricin To be Published

4L66

Crystal structure of Ribosome inactivating protein from Momordica balsamina with highly ordered water structure in the substrate binding site
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, rRNA N-glycosidase
Authors:	Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2013-06-12
Release date:	2013-06-26
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Crystal structure of Ribosome inactivating protein from Momordica balsamina with highly ordered water structure in the substrate binding site To be Published

4LGR

Ricin A chain bound to camelid nanobody (VHH3)
Descriptor:	1,2-ETHANEDIOL, ACETIC ACID, CHLORIDE ION, ...
Authors:	Rudolph, M.J, Cheung, J, Franklin, M, Burshteyn, F, Cassidy, M, Gary, E, Mantis, N.
Deposit date:	2013-06-28
Release date:	2014-06-11
Last modified:	2017-11-15
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Crystal Structures of Ricin Toxin's Enzymatic Subunit (RTA) in Complex with Neutralizing and Non-Neutralizing Single-Chain Antibodies. J.Mol.Biol., 426, 2014

4LHJ

Ricin A chain bound to camelid nanobody (VHH5)
Descriptor:	CHLORIDE ION, Camelid antibody, Ricin
Authors:	Rudolph, M.J, Cheung, J, Franklin, M, Burshteyn, F, Cassidy, M, Gary, E, Mantis, N.
Deposit date:	2013-07-01
Release date:	2014-06-11
Last modified:	2017-11-15
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Crystal Structures of Ricin Toxin's Enzymatic Subunit (RTA) in Complex with Neutralizing and Non-Neutralizing Single-Chain Antibodies. J.Mol.Biol., 426, 2014

4LGP

Ricin A chain bound to camelid nanobody (VHH1)
Descriptor:	1,2-ETHANEDIOL, CHLORIDE ION, Ricin, ...
Authors:	Rudolph, M.J, Cheung, J, Franklin, M, Burshteyn, F, Cassidy, M, Gary, E, Mantis, N.
Deposit date:	2013-06-28
Release date:	2014-06-11
Last modified:	2017-11-15
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Crystal Structures of Ricin Toxin's Enzymatic Subunit (RTA) in Complex with Neutralizing and Non-Neutralizing Single-Chain Antibodies. J.Mol.Biol., 426, 2014

4LHQ

Ricin A chain bound to camelid nanobody (VHH8)
Descriptor:	Camelid nanobody, Ricin
Authors:	Rudolph, M.J, Cheung, J, Franklin, M, Burshteyn, F, Cassidy, M, Gary, E, Mantis, N.
Deposit date:	2013-07-01
Release date:	2014-06-11
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Crystal Structures of Ricin Toxin's Enzymatic Subunit (RTA) in Complex with Neutralizing and Non-Neutralizing Single-Chain Antibodies. J.Mol.Biol., 426, 2014

4LRO

Crystal structure of spermidine inhibited Ribosome inactivating protein from Momordica balsamina
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, SPERMIDINE, ...
Authors:	Yamini, S, Pandey, S, Sinha, M, Bhushan, A, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2013-07-20
Release date:	2013-08-07
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.98 Å)
Cite:	Crystal structure of spermidine inhibited Ribosome inactivating protein from Momordica balsamina To be Published

4LWX

Crystal structure of the complex of Ribosome inactivating protein from Momordica Balsamina with peptidoglycan fragment at 1.78 A resolution
Descriptor:	2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ALANINE, ...
Authors:	Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2013-07-29
Release date:	2013-08-28
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.78 Å)
Cite:	Crystal structure of the complex of Ribosome inactivating protein from Momordica Balsamina with peptidoglycan fragment at 1.78 A resolution To be Published

4LGS

Ricin A chain bound to camelid nanobody (VHH4)
Descriptor:	Camelid nanobody (VHH4), Ricin
Authors:	Rudolph, M.J, Cheung, J, Franklin, M, Burshteyn, F, Cassidy, M, Gary, E, Mantis, N.
Deposit date:	2013-06-28
Release date:	2014-06-11
Last modified:	2017-11-15
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Crystal Structures of Ricin Toxin's Enzymatic Subunit (RTA) in Complex with Neutralizing and Non-Neutralizing Single-Chain Antibodies. J.Mol.Biol., 426, 2014

4LT4

Crystal structure of arginine inhibited Ribosome inactivating protein from Momordica balsamina at 1.69 A resolution
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, ARGININE, GLYCEROL, ...
Authors:	Yamini, S, Pandey, S, Bhushan, A, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2013-07-23
Release date:	2013-08-07
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.69 Å)
Cite:	Crystal structure of arginine inhibited Ribosome inactivating protein from Momordica balsamina at 1.69 A resolution To be Published

4KWN

A new stabilizing water structure at the substrate binding site in ribosome inactivating protein from Momordica balsamina at 1.80 A resolution
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, rRNA N-glycosidase
Authors:	Yamini, S, Pandey, S, Singh, A, Bhushan, A, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2013-05-24
Release date:	2013-06-12
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	A new stabilizing water structure at the substrate binding site in ribosome inactivating protein from Momordica balsamina at 1.80 A resolution To be Published

4M5A

Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina inhibited by asymmetric dimethyl arginine at 1.70 A resolution
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, NG,NG-DIMETHYL-L-ARGININE, rRNA N-glycosidase
Authors:	Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Bhushan, A, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2013-08-08
Release date:	2013-08-28
Last modified:	2023-12-06
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina inhibited by asymmetric dimethyl arginine at 1.70 A resolution To be Published

4MX5

Structure of ricin A chain bound with benzyl-(2-(2-amino-4-oxo-3,4-dihydropteridine-7-carboxamido)ethyl)carbamate
Descriptor:	Ricin A chain, benzyl (2-{[(2-amino-4-oxo-3,4-dihydropteridin-7-yl)carbonyl]amino}ethyl)carbamate
Authors:	Jasheway, K.R, Robertus, J.D, Wiget, P.A, Manzano, L.A, Pruet, J.M, Gao, G, Saito, R, Monzingo, A.F, Anslyn, E.V.
Deposit date:	2013-09-25
Release date:	2014-01-15
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (1.52 Å)
Cite:	Sulfur incorporation generally improves Ricin inhibition in pterin-appended glycine-phenylalanine dipeptide mimics. Bioorg.Med.Chem.Lett., 23, 2013

4JTB

Crystal structure of Ribosome inactivating protein from Momordica balsamina complexed with phosphate ion at 1.71 Angstrom resolution
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, rRNA N-glycosidase
Authors:	Pandey, S, Tyagi, T.K, Singh, A, Kushwaha, G.S, Sinha, M, Bhushan, A, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:	2013-03-23
Release date:	2013-04-17
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.71 Å)
Cite:	Crystal structure of Ribosome inactivating protein from Momordica balsamina complexed with phosphate ion at 1.71 Angstrom resolution To be published

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Total results:	295
Displayed results:	25
Sorted by:	Hit score (from highest)
Query:	PF00161