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2DXW
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Crystal structure of Glu54 to Lys mutant of Diphthine synthase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Mizutani, H, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-31
Release date:2007-03-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
To be Published
1XO1
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T5 5'-EXONUCLEASE MUTANT K83A
Descriptor: 5'-EXONUCLEASE
Authors:Ceska, T.A, Suck, D, Sayers, J.R.
Deposit date:1998-11-19
Release date:1999-04-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutagenesis of conserved lysine residues in bacteriophage T5 5'-3' exonuclease suggests separate mechanisms of endo-and exonucleolytic cleavage.
Proc.Natl.Acad.Sci.USA, 96, 1999
1RIE
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BU of 1rie by Molmil
STRUCTURE OF A WATER SOLUBLE FRAGMENT OF THE RIESKE IRON-SULFUR PROTEIN OF THE BOVINE HEART MITOCHONDRIAL CYTOCHROME BC1-COMPLEX
Descriptor: FE2/S2 (INORGANIC) CLUSTER, RIESKE IRON-SULFUR PROTEIN
Authors:Iwata, S, Saynovits, M, Link, T.A, Michel, H.
Deposit date:1996-02-23
Release date:1996-12-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of a water soluble fragment of the 'Rieske' iron-sulfur protein of the bovine heart mitochondrial cytochrome bc1 complex determined by MAD phasing at 1.5 A resolution.
Structure, 4, 1996
2EB0
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Crystal structure of Methanococcus jannaschii putative family II inorganic pyrophosphatase
Descriptor: MANGANESE (II) ION, Manganese-dependent inorganic pyrophosphatase
Authors:Shimada, A, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-05
Release date:2007-08-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Methanococcus jannaschii inorganic pyrophosphatase
To be Published
2DZ7
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BU of 2dz7 by Molmil
DNA Octaplex Formation with an I-Motif of A-Quartets: The Revised Crystal Structure of d(GCGAAAGC)
Descriptor: DNA (5'-D(*DGP*DCP*DGP*DAP*DAP*DAP*DGP*DC)-3'), MAGNESIUM ION
Authors:Sato, Y, Mitomi, K, Sumani, T, Kondo, J, Takenaka, A.
Deposit date:2006-09-21
Release date:2007-08-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DNA octaplex formation with an I-motif of water-mediated A-quartets: reinterpretation of the crystal structure of d(GCGAAAGC)
J.Biochem.(Tokyo), 140, 2006
2EBO
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CORE STRUCTURE OF GP2 FROM EBOLA VIRUS
Descriptor: CHLORIDE ION, EBOLA VIRUS ENVELOPE GLYCOPROTEIN
Authors:Malashkevich, V.N, Schneider, B.J, Mcnally, M.L, Milhollen, M.A, Pang, J.X, Kim, P.S.
Deposit date:1998-12-24
Release date:1999-05-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Core structure of the envelope glycoprotein GP2 from Ebola virus at 1.9-A resolution.
Proc.Natl.Acad.Sci.USA, 96, 1999
2E0Z
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BU of 2e0z by Molmil
Crystal structure of virus-like particle from Pyrococcus furiosus
Descriptor: Virus-like particle
Authors:Akita, F, Chong, K.T, Tanaka, H, Yamashita, E, Miyazaki, N, Nakaishi, Y, Namba, K, Ono, Y, Suzuki, M, Tsukihara, T, Nakagawa, A.
Deposit date:2006-10-16
Release date:2007-04-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The Crystal Structure of a Virus-like Particle from the Hyperthermophilic Archaeon Pyrococcus furiosus Provides Insight into the Evolution of Viruses
J.Mol.Biol., 368, 2007
2E1M
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BU of 2e1m by Molmil
Crystal Structure of L-Glutamate Oxidase from Streptomyces sp. X-119-6
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, L-glutamate oxidase, PHOSPHATE ION
Authors:Sasaki, C, Kashima, A, Sakaguchi, C, Mizuno, H, Arima, J, Kusakabe, H, Tamura, T, Sugio, S, Inagaki, K.
Deposit date:2006-10-26
Release date:2007-11-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural characterization of l-glutamate oxidase from Streptomyces sp. X-119-6
Febs J., 276, 2009
1R5Q
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Crystal Structure Analysis of Kai A from PCC7120
Descriptor: circadian oscillation regulator
Authors:Garces, R.G, Wu, N, Gillon, W, Pai, E.F.
Deposit date:2003-10-12
Release date:2004-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Anabaena circadian clock proteins KaiA and KaiB reveal a potential common binding site to their partner KaiC
Embo J., 23, 2004
1Y2F
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BU of 1y2f by Molmil
Crystal Structure of ZipA with an inhibitor
Descriptor: 4-{2-[4-(2-AMINOETHYL)PIPERAZIN-1-YL]PYRIDIN-4-YL}-N-(3-CHLORO-4-METHYLPHENYL)PYRIMIDIN-2-AMINE, Cell division protein zipA
Authors:Mosyak, L, Rush, T.S.
Deposit date:2004-11-22
Release date:2005-03-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction
J.Med.Chem., 48, 2005
2EEX
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BU of 2eex by Molmil
Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum
Descriptor: CALCIUM ION, CHLORIDE ION, Endoglucanase, ...
Authors:Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I.
Deposit date:2007-02-19
Release date:2007-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
1RRP
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BU of 1rrp by Molmil
STRUCTURE OF THE RAN-GPPNHP-RANBD1 COMPLEX
Descriptor: MAGNESIUM ION, NUCLEAR PORE COMPLEX PROTEIN NUP358, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Vetter, I.R, Nowak, C, Nishimoto, T, Kuhlmann, J, Wittinghofer, A.
Deposit date:1999-01-15
Release date:1999-05-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: implications for nuclear transport.
Nature, 398, 1999
2E5F
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BU of 2e5f by Molmil
Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with phosphate ion
Descriptor: 1,2-ETHANEDIOL, Hypothetical protein PH0510, PHOSPHATE ION
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-20
Release date:2007-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3
To be Published
1RA0
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BU of 1ra0 by Molmil
Bacterial cytosine deaminase D314G mutant bound to 5-fluoro-4-(S)-hydroxy-3,4-dihydropyrimidine.
Descriptor: (4S)-5-FLUORO-4-HYDROXY-3,4-DIHYDROPYRIMIDIN-2(1H)-ONE, Cytosine deaminase, FE (III) ION
Authors:Mahan, S.D, Ireton, G.C, Stoddard, B.L, Black, M.E.
Deposit date:2003-10-31
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Random mutagenesis and selection of Escherichia coli cytosine deaminase for cancer gene therapy.
Protein Eng.Des.Sel., 17, 2004
1RAB
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BU of 1rab by Molmil
CRYSTAL STRUCTURE OF CTP-LIGATED T STATE ASPARTATE TRANSCARBAMOYLASE AT 2.5 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ATCASE MUTANTS AND THE MECHANISM OF NEGATIVE COOPERATIVITY
Descriptor: Aspartate carbamoyltransferase catalytic chain, Aspartate carbamoyltransferase regulatory chain, CYTIDINE-5'-TRIPHOSPHATE, ...
Authors:Kosman, R.P, Gouaux, J.E, Lipscomb, W.N.
Deposit date:1992-08-14
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of CTP-ligated T state aspartate transcarbamoylase at 2.5 A resolution: implications for ATCase mutants and the mechanism of negative cooperativity.
Proteins, 15, 1993
1RAM
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BU of 1ram by Molmil
A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*CP*CP*G)-3'), PROTEIN (TRANSCRIPTION FACTOR NF-KB P65)
Authors:Chen, Y.-Q, Ghosh, S, Ghosh, G.
Deposit date:1997-11-22
Release date:1998-05-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A novel DNA recognition mode by the NF-kappa B p65 homodimer.
Nat.Struct.Biol., 5, 1998
2E7R
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BU of 2e7r by Molmil
Crystal structure of Glu54 to Arg mutant of Diphthine synthase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Mizutani, H, Matsuura, Y, Krishna Swamy, B.S, Simanshu, D.K, Murthy, M.R.N, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-12
Release date:2007-07-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
To be Published
2E83
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BU of 2e83 by Molmil
T31V mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-binding protein
Authors:Shibata, N, Higuchi, Y.
Deposit date:2007-01-17
Release date:2008-01-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structure of T31V mutant of FMN-binding protein from Desulfovibrio vulgaris Miyazaki F
To be Published
1R18
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BU of 1r18 by Molmil
Drosophila protein isoaspartyl methyltransferase with S-adenosyl-L-homocysteine
Descriptor: Protein-L-isoaspartate(D-aspartate)-O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Bennett, E.J, Bjerregaard, J, Knapp, J.E, Chavous, D.A, Friedman, A.M, Royer Jr, W.E, O'Connor, C.M.
Deposit date:2003-09-23
Release date:2003-12-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Catalytic implications from the Drosophila protein L-isoaspartyl methyltransferase structure and site-directed mutagenesis.
Biochemistry, 42, 2003
1RFN
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BU of 1rfn by Molmil
HUMAN COAGULATION FACTOR IXA IN COMPLEX WITH P-AMINO BENZAMIDINE
Descriptor: CALCIUM ION, P-AMINO BENZAMIDINE, PROTEIN (COAGULATION FACTOR IX), ...
Authors:Hopfner, K.-P, Lang, A, Karcher, A, Sichler, K, Kopetzki, E, Brandstetter, H, Huber, R, Bode, W, Engh, R.A.
Deposit date:1999-04-19
Release date:1999-09-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Coagulation factor IXa: the relaxed conformation of Tyr99 blocks substrate binding.
Structure Fold.Des., 7, 1999
1RXO
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BU of 1rxo by Molmil
ACTIVATED SPINACH RUBISCO IN COMPLEX WITH ITS SUBSTRATE RIBULOSE-1,5-BISPHOSPHATE AND CALCIUM
Descriptor: CALCIUM ION, RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE, RIBULOSE-1,5-DIPHOSPHATE
Authors:Taylor, T.C, Andersson, I.
Deposit date:1996-12-06
Release date:1997-06-16
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structure of the complex between rubisco and its natural substrate ribulose 1,5-bisphosphate.
J.Mol.Biol., 265, 1997
1SHG
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BU of 1shg by Molmil
CRYSTAL STRUCTURE OF A SRC-HOMOLOGY 3 (SH3) DOMAIN
Descriptor: ALPHA-SPECTRIN SH3 DOMAIN
Authors:Noble, M, Pauptit, R, Musacchio, A, Saraste, M, Wierenga, R.K.
Deposit date:1993-05-19
Release date:1993-10-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a Src-homology 3 (SH3) domain.
Nature, 359, 1992
1Y7U
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Crystal Structure of Acyl-Coa hydrolase from Bacillus cereus
Descriptor: Acyl-CoA hydrolase, CALCIUM ION, COENZYME A, ...
Authors:Kim, Y, Li, H, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-12-10
Release date:2005-01-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Acyl-CoA hydrolase from Bacillus cereus
To be Published
1S1U
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BU of 1s1u by Molmil
Crystal structure of L100I mutant HIV-1 reverse transcriptase in complex with nevirapine
Descriptor: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, Reverse transcriptase
Authors:Ren, J, Nichols, C.E, Chamberlain, P.P, Stammers, D.K.
Deposit date:2004-01-07
Release date:2004-06-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of HIV-1 reverse transcriptases mutated at codons 100, 106 and 108 and mechanisms of resistance to non-nucleoside inhibitors
J.Mol.Biol., 336, 2004
1SHR
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BU of 1shr by Molmil
Crystal structure of ferrocyanide bound human hemoglobin A2 at 1.88A resolution
Descriptor: CYANIDE ION, FE (III) ION, Hemoglobin alpha chain, ...
Authors:Sen, U, Dasgupta, J, Choudhury, D, Datta, P, Chakrabarti, A, Chakrabarty, S.B, Chakrabarty, A, Dattagupta, J.K.
Deposit date:2004-02-26
Release date:2004-10-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structures of HbA2 and HbE and modeling of hemoglobin delta4: interpretation of the thermal stability and the antisickling effect of HbA2 and identification of the ferrocyanide binding site in Hb
Biochemistry, 43, 2004

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