Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3ONS
DownloadVisualize
BU of 3ons by Molmil
Crystal structure of Human Ubiquitin in a new crystal form
Descriptor: Ubiquitin
Authors:Amodeo, G.A, Huang, K.Y, Mcdermott, A.E, Tong, L.
Deposit date:2010-08-30
Release date:2011-02-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of human ubiquitin in 2-methyl-2,4-pentanediol: a new conformational switch.
Protein Sci., 20, 2011
3N30
DownloadVisualize
BU of 3n30 by Molmil
Crystal Structure of cubic Zn3-hUb (human ubiquitin) adduct
Descriptor: Ubiquitin, ZINC ION
Authors:Siliqi, D, Caliandro, R, Arnesano, F, Natile, G, Falini, G, Fermani, S, Belviso, B.D.
Deposit date:2010-05-19
Release date:2011-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic analysis of metal-ion binding to human ubiquitin.
Chemistry, 17, 2011
3N32
DownloadVisualize
BU of 3n32 by Molmil
The crystal structure of human Ubiquitin adduct with Zeise's salt
Descriptor: PLATINUM (II) ION, Ubiquitin
Authors:Siliqi, D, Caliandro, R, Falini, G, Fermani, S, Natile, G, Arnesano, F, Belviso, B.D.
Deposit date:2010-05-19
Release date:2011-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.795 Å)
Cite:Crystallographic analysis of metal-ion binding to human ubiquitin.
Chemistry, 17, 2011
3OJ3
DownloadVisualize
BU of 3oj3 by Molmil
Crystal structure of the A20 ZnF4 and ubiquitin complex
Descriptor: Tumor necrosis factor alpha-induced protein 3, Ubiquitin, ZINC ION
Authors:Bosanac, I, Hymowitz, S.G.
Deposit date:2010-08-20
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ubiquitin Binding to A20 ZnF4 Is Required for Modulation of NF-KB Signaling
Mol.Cell, 40, 2010
6KOW
DownloadVisualize
BU of 6kow by Molmil
Retracted state of S65/T66 double-phosphorylated ubiquitin
Descriptor: Polyubiquitin-B
Authors:Dong, X, Tang, C.
Deposit date:2019-08-13
Release date:2019-08-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch.
Protein Cell, 10, 2019
3QHT
DownloadVisualize
BU of 3qht by Molmil
Crystal Structure of the Monobody ySMB-1 bound to yeast SUMO
Descriptor: GLYCEROL, Monobody ySMB-1, Ubiquitin-like protein SMT3
Authors:Koide, S, Gilbreth, R.N.
Deposit date:2011-01-26
Release date:2011-05-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Isoform-specific monobody inhibitors of small ubiquitin-related modifiers engineered using structure-guided library design.
Proc.Natl.Acad.Sci.USA, 108, 2011
6MDH
DownloadVisualize
BU of 6mdh by Molmil
X-ray crystal structure of ISG15 from Myotis davidii
Descriptor: Ubiquitin-like protein ISG15
Authors:Goodwin, O.Y, Langley, C.A, Dzimianski, J.V, Daczkowski, C.M, Pegan, S.D.
Deposit date:2018-09-04
Release date:2018-12-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Structure of interferon-stimulated gene product 15 (ISG15) from the bat species Myotis davidii and the impact of interdomain ISG15 interactions on viral protein engagement.
Acta Crystallogr D Struct Biol, 75, 2019
6K4I
DownloadVisualize
BU of 6k4i by Molmil
The partially disordered conformation of ubiquitin (Q41N variant)
Descriptor: ubiquitin
Authors:Wakamoto, T, Ikeya, T, Kitazawa, S, Baxter, N.J, Williamson, M.P, Kitahara, R.
Deposit date:2019-05-24
Release date:2019-10-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Paramagnetic relaxation enhancement-assisted structural characterization of a partially disordered conformation of ubiquitin.
Protein Sci., 28, 2019
3NOB
DownloadVisualize
BU of 3nob by Molmil
Structure of K11-linked di-ubiquitin
Descriptor: SULFATE ION, Ubiquitin
Authors:Dong, K.C, Matsumoto, M.L, Hymowitz, S.G.
Deposit date:2010-06-25
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:K11-Linked Polyubiquitination in Cell Cycle Control Revealed by a K11 Linkage-Specific Antibody.
Mol.Cell, 39, 2010
3NS8
DownloadVisualize
BU of 3ns8 by Molmil
Crystal structure of an open conformation of Lys48-linked diubiquitin at pH 7.5
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Ubiquitin
Authors:Zhang, D, LaRonde-LeBlanc, N, Fushman, D.
Deposit date:2010-07-01
Release date:2011-07-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.707 Å)
Cite:Structural and biochemical studies of the open state of Lys48-linked diubiquitin.
Biochim.Biophys.Acta, 1823, 2012
6P81
DownloadVisualize
BU of 6p81 by Molmil
Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin
Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, ACETATE ION, CALCIUM ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2019-06-06
Release date:2019-07-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin
to be published
3H7P
DownloadVisualize
BU of 3h7p by Molmil
Crystal structure of K63-linked di-ubiquitin
Descriptor: CADMIUM ION, Ubiquitin
Authors:Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
Deposit date:2009-04-28
Release date:2009-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture.
Proteins, 77, 2009
3H1U
DownloadVisualize
BU of 3h1u by Molmil
Structure of ubiquitin in complex with Cd ions
Descriptor: CADMIUM ION, Ubiquitin
Authors:Qureshi, I.A, Ferron, F, Cheung, P, Lescar, J.
Deposit date:2009-04-14
Release date:2009-05-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic structure of ubiquitin in complex with cadmium ions
BMC RES NOTES, 2, 2009
3H7S
DownloadVisualize
BU of 3h7s by Molmil
Crystal structures of K63-linked di- and tri-ubiquitin reveal a highly extended chain architecture
Descriptor: Ubiquitin, ZINC ION
Authors:Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
Deposit date:2009-04-28
Release date:2009-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture.
Proteins, 77, 2009
3HM3
DownloadVisualize
BU of 3hm3 by Molmil
The Structure and conformation of Lys-63 linked tetra-ubiquitin
Descriptor: Ubiquitin, ZINC ION
Authors:Datta, A.B, Hura, G.L, Wolberger, C.
Deposit date:2009-05-28
Release date:2009-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The structure and conformation of Lys63-linked tetraubiquitin.
J.Mol.Biol., 392, 2009
6QK9
DownloadVisualize
BU of 6qk9 by Molmil
A dimeric ubiquitin formed by a single amino acid substitution
Descriptor: Polyubiquitin-B
Authors:Gabrielsen, M, Kowalczyk, D, Buetow, L, Huang, D.T.
Deposit date:2019-01-28
Release date:2019-07-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.231 Å)
Cite:Identification and Characterization of Mutations in Ubiquitin Required for Non-covalent Dimer Formation.
Structure, 27, 2019
6QF8
DownloadVisualize
BU of 6qf8 by Molmil
Solution NMR ensemble for human ubiquitin at 298K compiled using the CoMAND method
Descriptor: Polyubiquitin-B
Authors:ElGamacy, M, Truffault, V, Zhu, H, Coles, M.
Deposit date:2019-01-09
Release date:2019-04-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Mapping Local Conformational Landscapes of Proteins in Solution.
Structure, 27, 2019
7RMA
DownloadVisualize
BU of 7rma by Molmil
Structure of the fourth UIM (Ubiquitin Interacting Motif) of ANKRD13D in complex with a high affinity UbV (Ubiquitin Variant)
Descriptor: Ankyrin repeat domain-containing protein 13D, SODIUM ION, SULFATE ION, ...
Authors:Singer, A.U, Manczyk, N, Veggiani, G, Sicheri, F, Sidhu, S.S.
Deposit date:2021-07-27
Release date:2022-05-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Panel of Engineered Ubiquitin Variants Targeting the Family of Human Ubiquitin Interacting Motifs.
Acs Chem.Biol., 17, 2022
7UYH
DownloadVisualize
BU of 7uyh by Molmil
Structure of the first OTU domain from Legionella pneumophila effector protein LotA bound to K6-linked diUb
Descriptor: LotA, Ubiquitin
Authors:Warren, G.D, Pruneda, J.N.
Deposit date:2022-05-06
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mechanism of Lys6 poly-ubiquitin specificity by the L. pneumophila deubiquitinase LotA.
Mol.Cell, 83, 2023
4A20
DownloadVisualize
BU of 4a20 by Molmil
Crystal structure of the Ubl domain of Mdy2 (Get5) at 1.78A
Descriptor: SULFATE ION, UBIQUITIN-LIKE PROTEIN MDY2
Authors:Simon, A.C, Simpson, P.J, Murray, J.W, Isaacson, R.L.
Deposit date:2011-09-21
Release date:2012-11-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure of the Sgt2/Get5 Complex Provides Insights Into Get-Mediated Targeting of Tail-Anchored Membrane Proteins
Proc.Natl.Acad.Sci.USA, 110, 2013
3ZLZ
DownloadVisualize
BU of 3zlz by Molmil
Lys6-linked tri-ubiquitin
Descriptor: UBIQUITIN, ZINC ION
Authors:Hospenthal, M.K, Freund, S.M.V, Komander, D.
Deposit date:2013-02-04
Release date:2013-04-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Assembly, Analysis and Architecture of Atypical Ubiquitin Chains
Nat.Struct.Mol.Biol., 20, 2013
7W54
DownloadVisualize
BU of 7w54 by Molmil
Crystal structure of a bacterial OTU DUB with Ub-PA
Descriptor: Lpg2248, Polyubiquitin-B, prop-2-en-1-amine
Authors:Zhen, X, Ouyang, S.Y.
Deposit date:2021-11-29
Release date:2022-08-24
Last modified:2023-04-05
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structural basis for the dual catalytic activity of the Legionella pneumophila ovarian tumor (OTU) domain deubiquitinase LotA.
J.Biol.Chem., 298, 2022
5TOG
DownloadVisualize
BU of 5tog by Molmil
Room temperature structure of ubiquitin variant u7ub25.2540
Descriptor: Polyubiquitin-B, SULFATE ION
Authors:Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S.
Deposit date:2016-10-17
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin.
Structure, 25, 2017
5MN9
DownloadVisualize
BU of 5mn9 by Molmil
Crystal structure of MINDY-1 tMIU in complex with K48-diUb
Descriptor: Ubiquitin carboxyl-terminal hydrolase MINDY-1, Ubiquitin-40S ribosomal protein S27a
Authors:Kristariyanto, Y.A, Abdul Rehman, S.A, Kulathu, Y.
Deposit date:2016-12-13
Release date:2017-01-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A single MIU motif of MINDY-1 recognizes K48-linked polyubiquitin chains.
EMBO Rep., 18, 2017
5TOF
DownloadVisualize
BU of 5tof by Molmil
Room temperature structure of ubiquitin variant u7ub25
Descriptor: Polyubiquitin-B, SULFATE ION
Authors:Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S.
Deposit date:2016-10-17
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin.
Structure, 25, 2017

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon