Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5LIT
DownloadVisualize
BU of 5lit by Molmil
Structure of the DNA duplex d(AAATTT)2 with the potential antiparasitic drug 6XV at 1.25 A resolution
Descriptor: 4-((4,5-dihydro-1H-imidazol-2-yl)amino)-N-(4-((4,5-dihydro-1H-imidazol-2-yl)amino)phenyl)benzamide dihydrochloride, DNA (5'-D(*AP*AP*AP*TP*TP*T)-3'), MAGNESIUM ION
Authors:Millan, C.R, Dardonville, C, de Koning, H.P, Saperas, N, Lourdes Campos, J.
Deposit date:2016-07-15
Release date:2017-06-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Functional and structural analysis of AT-specific minor groove binders that disrupt DNA-protein interactions and cause disintegration of the Trypanosoma brucei kinetoplast.
Nucleic Acids Res., 45, 2017
5LP3
DownloadVisualize
BU of 5lp3 by Molmil
Three tetrameric rings of Isoaspartyl Dipeptidase fitted in an EM volume.
Descriptor: Isoaspartyl dipeptidase
Authors:Garcia-Seisdedos, H, Empereur-Mot, C, Elad, N, Levy, E.D.
Deposit date:2016-08-11
Release date:2017-07-26
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (10.5 Å)
Cite:Proteins evolve on the edge of supramolecular self-assembly.
Nature, 548, 2017
5LJ3
DownloadVisualize
BU of 5lj3 by Molmil
Structure of the core of the yeast spliceosome immediately after branching
Descriptor: CEF1, CLF1, CWC15, ...
Authors:Galej, W.P, Wilkinson, M.F, Fica, S.M, Oubridge, C, Newman, A.J, Nagai, K.
Deposit date:2016-07-17
Release date:2016-08-03
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structure of the spliceosome immediately after branching.
Nature, 537, 2016
3W31
DownloadVisualize
BU of 3w31 by Molmil
Structual basis for the recognition of Ubc13 by the Shigella flexneri effector OspI
Descriptor: IODIDE ION, ORF169b, Ubiquitin-conjugating enzyme E2 N
Authors:Nishide, A, Kim, M, Takagi, K, Sasakawa, C, Mizushima, T.
Deposit date:2012-12-07
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Structural basis for the recognition of Ubc13 by the Shigella flexneri effector OspI.
J.Mol.Biol., 425, 2013
8JOJ
DownloadVisualize
BU of 8joj by Molmil
Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 9,11-epoxy-17-hydroxypregn-4-ene-3,20-dione actate
Descriptor: 3-ketosteroid dehydrogenase, 9,11-epoxy-17-hydroxypregn-4-ene-3,20-dione actate, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Hu, Y.L, Li, X, Cheng, X.Y, Song, S.K, Su, Z.D.
Deposit date:2023-06-07
Release date:2023-07-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.819 Å)
Cite:Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 9,11-epoxy-17-hydroxypregn-4-ene-3,20-dione actate
To Be Published
4HXN
DownloadVisualize
BU of 4hxn by Molmil
Brd4 Bromodomain 1 complex with 4-(2-FLUOROPHENYL)-1,3-THIAZOL-2(3H)-ONE inhibitor
Descriptor: 4-(2-fluorophenyl)-1,3-thiazol-2(3H)-one, Bromodomain-containing protein 4
Authors:Chen, T.T, Cao, D.Y, Chen, W.Y, Xiong, B, Shen, J.K, Xu, Y.C.
Deposit date:2012-11-12
Release date:2013-04-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Fragment-Based Drug Discovery of 2-Thiazolidinones as Inhibitors of the Histone Reader BRD4 Bromodomain.
J.Med.Chem., 56, 2013
4Q7A
DownloadVisualize
BU of 4q7a by Molmil
Crystal Structure of N-acetyl-ornithine/N-acetyl-lysine Deacetylase from Sphaerobacter thermophilus
Descriptor: CHLORIDE ION, GLYCEROL, N-acetyl-ornithine/N-acetyl-lysine deacetylase, ...
Authors:Kim, Y, Tesar, C, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-04-24
Release date:2014-07-02
Method:X-RAY DIFFRACTION (2.048 Å)
Cite:Crystal Structure of N-acetyl-ornithine/N-acetyl-lysine Deacetylase from Sphaerobacter thermophilus
To be Published
6B0D
DownloadVisualize
BU of 6b0d by Molmil
An E. coli DPS protein from ferritin superfamily
Descriptor: DNA protection during starvation protein, FORMIC ACID, SODIUM ION
Authors:Rui, W, Ruslan, S, Ronan, K, Adam, J.S.
Deposit date:2017-09-14
Release date:2018-09-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:SIMBAD: a sequence-independent molecular-replacement pipeline.
Acta Crystallogr D Struct Biol, 74, 2018
8D7F
DownloadVisualize
BU of 8d7f by Molmil
FlvF from Aspergillus flavus in complex with Bis-Tris
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Terpene cyclase flvF
Authors:Tararina, M.A, Christianson, D.W.
Deposit date:2022-06-07
Release date:2022-09-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structure of the Repurposed Fungal Terpene Cyclase FlvF Implicated in the C-N Bond-Forming Reaction of Flavunoidine Biosynthesis.
Biochemistry, 61, 2022
6B0Z
DownloadVisualize
BU of 6b0z by Molmil
IDH1 R132H mutant in complex with IDH305
Descriptor: (4R)-4-[(1S)-1-fluoroethyl]-3-[2-({(1S)-1-[4-methyl-2'-(trifluoromethyl)[3,4'-bipyridin]-6-yl]ethyl}amino)pyrimidin-4-yl]-1,3-oxazolidin-2-one, CITRATE ANION, Isocitrate dehydrogenase [NADP] cytoplasmic, ...
Authors:Xie, X, Kulathila, R.
Deposit date:2017-09-15
Release date:2017-11-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.334 Å)
Cite:Discovery and Evaluation of Clinical Candidate IDH305, a Brain Penetrant Mutant IDH1 Inhibitor.
ACS Med Chem Lett, 8, 2017
3NXR
DownloadVisualize
BU of 3nxr by Molmil
Perferential Selection of Isomer Binding from Chiral Mixtures: Alternate Binding Modes Observed for the E- and Z-isomers of a Series of 5-Substituted 2,4-Diaminofuro[2,3-d]pyrimidines as Ternary Complexes with NADPH and Human Dihydrofolate Reductase
Descriptor: 5-[(1E)-2-(2-methoxyphenyl)-4-methylpent-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine, Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Cody, V.
Deposit date:2010-07-14
Release date:2010-12-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Preferential selection of isomer binding from chiral mixtures: alternate binding modes observed for the E and Z isomers of a series of 5-substituted 2,4-diaminofuro[2,3-d]pyrimidines as ternary complexes with NADPH and human dihydrofolate reductase.
Acta Crystallogr.,Sect.D, 66, 2010
3NXX
DownloadVisualize
BU of 3nxx by Molmil
Preferential Selection of Isomer Binding from Chiral Mixtures: Alternate Binding Modes Observed for the E- and Z-isomers of a Series of 5-Substituted 2,4-Diaminofuro-2,3-d]pyrimidines as Ternary Complexes with NADPH and Human Dihydrofolate Reductase
Descriptor: 5-[(1E)-2-(2-methoxyphenyl)-4-methylpent-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine, Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Cody, V.
Deposit date:2010-07-14
Release date:2010-12-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Preferential selection of isomer binding from chiral mixtures: alternate binding modes observed for the E and Z isomers of a series of 5-substituted 2,4-diaminofuro[2,3-d]pyrimidines as ternary complexes with NADPH and human dihydrofolate reductase.
Acta Crystallogr.,Sect.D, 66, 2010
8A4O
DownloadVisualize
BU of 8a4o by Molmil
Crystal structure of the Ustilago hordei effector protein Uvi2
Descriptor: Effector protein Uvi2
Authors:Weiland, P, Bange, G, Altegoer, F.
Deposit date:2022-06-13
Release date:2023-05-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural and functional analysis of the cerato-platanin-like protein Cpl1 suggests diverging functions in smut fungi.
Mol Plant Pathol, 24, 2023
1S40
DownloadVisualize
BU of 1s40 by Molmil
SOLUTION STRUCTURE OF THE CDC13 DNA-BINDING DOMAIN COMPLEXED WITH A SINGLE-STRANDED TELOMERIC DNA 11-MER
Descriptor: 5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3', Cell division control protein 13
Authors:Mitton-Fry, R.M, Anderson, E.M, Theobald, D.L, Glustrom, L.W, Wuttke, D.S.
Deposit date:2004-01-14
Release date:2004-05-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural basis for telomeric single-stranded DNA recognition by yeast Cdc13
J.Mol.Biol., 338, 2004
1ILQ
DownloadVisualize
BU of 1ilq by Molmil
CXCR-1 N-TERMINAL PEPTIDE BOUND TO INTERLEUKIN-8 (MINIMIZED MEAN)
Descriptor: INTERLEUKIN-8 PRECURSOR, INTERLEUKIN-8 RECEPTOR A
Authors:Skelton, N.J, Quan, C, Lowman, H.
Deposit date:1998-12-17
Release date:1998-12-23
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Structure of a CXC chemokine-receptor fragment in complex with interleukin-8.
Structure Fold.Des., 7, 1999
8J51
DownloadVisualize
BU of 8j51 by Molmil
Crystal structure of Flavihumibacter petaseus GH31 alpha-galactosidase in complex with galactose
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GH31 alpha-galactosidase, ...
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2023-04-21
Release date:2023-07-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure-function analysis of bacterial GH31 alpha-galactosidases specific for alpha-(1→4)-galactobiose.
Febs J., 290, 2023
4QGS
DownloadVisualize
BU of 4qgs by Molmil
Substrate and cofactor-free form of the Aldehyde Reductase YqhD from E. coli.
Descriptor: Alcohol dehydrogenase YqhD, CHLORIDE ION, ZINC ION
Authors:LaMattina, J.W, Kapoor, S, Lanzilotta, W.N.
Deposit date:2014-05-24
Release date:2015-05-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Open form of E. coli YqhD
To be Published
8A14
DownloadVisualize
BU of 8a14 by Molmil
Crystal structure of the cerato-platanin-like protein Cpl1 from Ustilago maydis
Descriptor: Cerato-platatanin-like protein 1
Authors:Weiland, P, Bange, G, Altegoer, F.
Deposit date:2022-05-31
Release date:2023-05-17
Last modified:2023-06-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of the cerato-platanin-like protein Cpl1 suggests diverging functions in smut fungi.
Mol Plant Pathol, 24, 2023
8J50
DownloadVisualize
BU of 8j50 by Molmil
Crystal structure of Flavihumibacter petaseus GH31 alpha-galactosidase
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GH31 alpha-galactosidase
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2023-04-21
Release date:2023-07-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-function analysis of bacterial GH31 alpha-galactosidases specific for alpha-(1→4)-galactobiose.
Febs J., 290, 2023
1BHJ
DownloadVisualize
BU of 1bhj by Molmil
CRYSTAL STRUCTURE OF APO-GLYCINE N-METHYLTRANSFERASE (GNMT)
Descriptor: GLYCINE N-METHYLTRANSFERASE
Authors:Pattanayek, R, Newcomer, M.E, Wagner, C.
Deposit date:1998-06-09
Release date:1999-01-06
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of apo-glycine N-methyltransferase (GNMT).
Protein Sci., 7, 1998
8J52
DownloadVisualize
BU of 8j52 by Molmil
Crystal structure of Flavihumibacter petaseus GH31 alpha-galactosidase mutant D304A in complex with alpha-1,4-galactobiose
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GH31 alpha-galactosidase, ...
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2023-04-21
Release date:2023-07-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-function analysis of bacterial GH31 alpha-galactosidases specific for alpha-(1→4)-galactobiose.
Febs J., 290, 2023
8J53
DownloadVisualize
BU of 8j53 by Molmil
Crystal structure of Bacteroides salyersiae GH31 alpha-galactosidase
Descriptor: GH31 alpha-galactosidase
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2023-04-21
Release date:2023-07-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure-function analysis of bacterial GH31 alpha-galactosidases specific for alpha-(1→4)-galactobiose.
Febs J., 290, 2023
3WAL
DownloadVisualize
BU of 3wal by Molmil
Crystal structure of human LC3A_2-121
Descriptor: D-MALATE, Microtubule-associated proteins 1A/1B light chain 3A
Authors:Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S.
Deposit date:2013-05-06
Release date:2013-12-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
Structure, 22, 2014
1ATI
DownloadVisualize
BU of 1ati by Molmil
CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
Descriptor: GLYCYL-TRNA SYNTHETASE, GLYCYL-tRNA SYNTHETASE
Authors:Logan, D.T, Mazauric, M.-H, Kern, D, Moras, D.
Deposit date:1996-04-23
Release date:1997-07-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of glycyl-tRNA synthetase from Thermus thermophilus.
EMBO J., 14, 1995
3O3P
DownloadVisualize
BU of 3o3p by Molmil
Crystal structure of R. xylanophilus MpgS in complex with GDP-Mannose
Descriptor: CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, ...
Authors:Macedo-Ribeiro, S, Pereira, P.J.B, Empadinhas, N, da Costa, M.S.
Deposit date:2010-07-25
Release date:2010-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.529 Å)
Cite:Functional and structural characterization of a novel mannosyl-3-phosphoglycerate synthase from Rubrobacter xylanophilus reveals its dual substrate specificity
Mol.Microbiol., 79, 2011

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon