Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3RVA
DownloadVisualize
BU of 3rva by Molmil
Crystal structure of organophosphorus acid anhydrolase from Alteromonas macleodii
Descriptor: MANGANESE (II) ION, NICKEL (II) ION, Organophosphorus acid anhydrolase, ...
Authors:Stepankova, A, Koval, T, Ostergaard, L.H, Duskova, J, Skalova, T, Hasek, J, Dohnalek, J.
Deposit date:2011-05-06
Release date:2012-05-09
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Organophosphorus acid anhydrolase from Alteromonas macleodii: structural study and functional relationship to prolidases.
Acta Crystallogr.,Sect.F, 69, 2013
3RVH
DownloadVisualize
BU of 3rvh by Molmil
Crystal Structure of JMJD2A Complexed with Inhibitor
Descriptor: 8-hydroxy-3-(piperazin-1-yl)quinoline-5-carboxylic acid, GLYCEROL, Lysine-specific demethylase 4A, ...
Authors:King, O.N.F, Maloney, D.J, Tumber, A, Rai, G, Jadhav, A, Clifton, I.J, Heightman, T.D, Simeonov, A, McDonough, M.A, Schofield, C.J.
Deposit date:2011-05-06
Release date:2012-05-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.251 Å)
Cite:Crystal Structure of JMJD2A Complexed with Inhibitor
To be Published
3WJY
DownloadVisualize
BU of 3wjy by Molmil
Orotidine 5'-monophosphate decarboxylase K72A mutant from M. thermoautotrophicus complexed with 6-amino-UMP
Descriptor: 6-AMINOURIDINE 5'-MONOPHOSPHATE, GLYCEROL, Orotidine 5'-phosphate decarboxylase
Authors:Fujihashi, M, Pai, E.F, Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
5MKB
DownloadVisualize
BU of 5mkb by Molmil
Maltodextrin binding protein MalE1 from L. casei BL23 without ligand
Descriptor: MalE1
Authors:Homburg, C, Bommer, M, Wuttge, S, Hobe, C, Beck, S, Dobbek, H, Deutscher, J, Licht, A, Schneider, E.
Deposit date:2016-12-03
Release date:2017-07-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Inducer exclusion in Firmicutes: insights into the regulation of a carbohydrate ATP binding cassette transporter from Lactobacillus casei BL23 by the signal transducing protein P-Ser46-HPr.
Mol. Microbiol., 105, 2017
5MMF
DownloadVisualize
BU of 5mmf by Molmil
Crystal Structure of CK2alpha with Compound 7 bound
Descriptor: (3-chloranyl-4-phenyl-phenyl)methyl-propyl-azanium, ACETATE ION, Casein kinase II subunit alpha
Authors:Brear, P, De Fusco, C, Georgiou, K.H, Spring, D, Hyvonen, M.
Deposit date:2016-12-09
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:A fragment-based approach leading to the discovery of a novel binding site and the selective CK2 inhibitor CAM4066.
Bioorg. Med. Chem., 25, 2017
6YHH
DownloadVisualize
BU of 6yhh by Molmil
X-ray Structure of Flavobacterium johnsoniae chitobiase (FjGH20)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-N-acetylglucosaminidase-like protein Glycoside hydrolase family 20, GLYCEROL
Authors:Mazurkewich, S, Helland, R, MacKenzie, A, Eijsink, V.G.H, Pope, P.B, Branden, G, Larsbrink, J.
Deposit date:2020-03-30
Release date:2020-09-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights of the enzymes from the chitin utilization locus of Flavobacterium johnsoniae.
Sci Rep, 10, 2020
3RTT
DownloadVisualize
BU of 3rtt by Molmil
Human MMP-12 catalytic domain in complex with*(R)-N*-Hydroxy-1-(phenethylsulfonyl)pyrrolidine-2-carboxamide
Descriptor: CALCIUM ION, Macrophage metalloelastase, N-hydroxy-1-[(2-phenylethyl)sulfonyl]-D-prolinamide, ...
Authors:Bertini, I, Calderone, V, Fragai, M, Luchinat, C, Mori, M, Nativi, C.
Deposit date:2011-05-04
Release date:2012-07-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Contribution of ligand free energy of solvation to design new potent MMPs inhibitors.
J.Med.Chem., 2012
3RWL
DownloadVisualize
BU of 3rwl by Molmil
Structure of P450pyr hydroxylase
Descriptor: Cytochrome P450 alkane hydroxylase 1 CYP153A7, PROTOPORPHYRIN IX CONTAINING FE
Authors:Pompidor, G.
Deposit date:2011-05-09
Release date:2012-04-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Evolving P450pyr hydroxylase for highly enantioselective hydroxylation at non-activated carbon atom.
Chem.Commun.(Camb.), 48, 2012
3RYO
DownloadVisualize
BU of 3ryo by Molmil
Crystal Structure of Enhanced Intracellular Survival (Eis) Protein from Mycobacterium tuberculosis with Acetyl CoA
Descriptor: ACETYL COENZYME *A, Enhanced intracellular survival protein
Authors:Kim, K.H, An, D.R, Yoon, J.Y, Kim, H.S, Yoon, H.J, Song, J, Im, H.N, Kim, J, Kim, D.J, Lee, S.J, Kim, H.J, Lee, J.Y, Suh, S.W.
Deposit date:2011-05-11
Release date:2012-05-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mycobacterium tuberculosis Eis protein initiates suppression of host immune responses by acetylation of DUSP16/MKP-7
Proc.Natl.Acad.Sci.USA, 2012
5MPH
DownloadVisualize
BU of 5mph by Molmil
Structural Basis of Gene Regulation by the Grainyhead Transcription Factor Superfamily
Descriptor: Grainyhead-like protein 1 homolog, IODIDE ION
Authors:Ming, Q, Roske, Y, Schuetz, A, Walentin, K, Ibraimi, I, Schmidt-Ott, K.M, Heinemann, U.
Deposit date:2016-12-16
Release date:2018-01-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.337 Å)
Cite:Structural basis of gene regulation by the Grainyhead/CP2 transcription factor family.
Nucleic Acids Res., 46, 2018
3S0O
DownloadVisualize
BU of 3s0o by Molmil
CDK2 in complex with inhibitor RC-1-138
Descriptor: Cyclin-dependent kinase 2, [4-amino-2-(prop-2-en-1-ylamino)-1,3-thiazol-5-yl](pyridin-2-yl)methanone
Authors:Betzi, S, Alam, R, Han, H, Becker, A, Schonbrunn, E.
Deposit date:2011-05-13
Release date:2012-10-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Development of highly potent and selective diaminothiazole inhibitors of cyclin-dependent kinases.
J.Med.Chem., 56, 2013
3S1B
DownloadVisualize
BU of 3s1b by Molmil
The Development of Peptide-based Tools for the Analysis of Angiogenesis
Descriptor: Vascular endothelial growth factor A, mini-Z
Authors:Murray, J.M, Wiesmann, C.
Deposit date:2011-05-14
Release date:2011-08-17
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The development of Peptide-based tools for the analysis of angiogenesis.
Chem.Biol., 18, 2011
5MQ4
DownloadVisualize
BU of 5mq4 by Molmil
Crystal Structure of the leucine zipper of human PRKCBP1
Descriptor: Protein kinase C-binding protein 1, SULFATE ION, ZINC ION
Authors:Krojer, T, Savitsky, P, Picaud, S, Newman, J, Tallant, C, Heroven, C, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Filippakopoulos, P.
Deposit date:2016-12-20
Release date:2017-01-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of the leucine zipper of human PRKCBP1
To Be Published
5M5U
DownloadVisualize
BU of 5m5u by Molmil
Clathrin heavy chain N-terminal domain bound to a clathrin-box motif from hepatitis D virus large antigen (clade 1)
Descriptor: Clathrin heavy chain 1, GLYCEROL, Large delta antigen
Authors:Muenzner, J, Graham, S.C.
Deposit date:2016-10-22
Release date:2016-11-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Cellular and viral peptides bind multiple sites on the N-terminal domain of clathrin.
Traffic, 18, 2017
3S28
DownloadVisualize
BU of 3s28 by Molmil
The crystal structure of sucrose synthase-1 in complex with a breakdown product of the UDP-glucose
Descriptor: 1,5-anhydro-D-arabino-hex-1-enitol, 1,5-anhydro-D-fructose, MALONIC ACID, ...
Authors:Zheng, Y, Garavito, R.M.
Deposit date:2011-05-16
Release date:2011-08-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Structure of Sucrose Synthase-1 from Arabidopsis thaliana and Its Functional Implications.
J.Biol.Chem., 286, 2011
3RUP
DownloadVisualize
BU of 3rup by Molmil
Crystal structure of E.coli biotin carboxylase in complex with two ADP and two Ca ions
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Biotin carboxylase, CALCIUM ION, ...
Authors:Chou, C.Y, Tong, L.
Deposit date:2011-05-05
Release date:2011-05-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and biochemical studies on the regulation of biotin carboxylase by substrate inhibition and dimerization.
J.Biol.Chem., 286, 2011
3RV9
DownloadVisualize
BU of 3rv9 by Molmil
Structure of a M. tuberculosis Salicylate Synthase, MbtI, in Complex with an Inhibitor with Ethyl R-Group
Descriptor: 3-{[(1Z)-1-carboxybut-1-en-1-yl]oxy}-2-hydroxybenzoic acid, Isochorismate synthase/isochorismate-pyruvate lyase mbtI
Authors:Chi, G, Bulloch, E.M.M, Manos-Turvey, A, Payne, R.J, Lott, J.S, TB Structural Genomics Consortium (TBSGC)
Deposit date:2011-05-06
Release date:2012-05-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Implications of binding mode and active site flexibility for inhibitor potency against the salicylate synthase from Mycobacterium tuberculosis
Biochemistry, 51, 2012
5M7V
DownloadVisualize
BU of 5m7v by Molmil
Translation initiation factor 4E in complex with (RP)-m2(7,2'O)GppSpG mRNA 5' cap analog (beta-S-ARCA D1)
Descriptor: Eukaryotic translation initiation factor 4E, GLYCEROL, [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl [phosphonooxy(sulfanyl)phosphoryl] hydrogen phosphate
Authors:Warminski, M, Nowak, E, Kowalska, J, Jemielity, J, Nowotny, M.
Deposit date:2016-10-28
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Translation initiation factor 4E in complex with (RP)-m2(7,2'O)GppSpG mRNA 5' cap analog (beta-S-ARCA D1)
To Be Published
3S3Z
DownloadVisualize
BU of 3s3z by Molmil
Crystal Structure an Tandem Cyanovirin-N Dimer, CVN2L10
Descriptor: SODIUM ION, Tandem Cyanovirin-N Dimer CVN2L10
Authors:Keeffe, J.R, Bjorkman, P.J, Mayo, S.L.
Deposit date:2011-05-18
Release date:2011-08-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Designed oligomers of cyanovirin-N show enhanced HIV neutralization.
Proc.Natl.Acad.Sci.USA, 108, 2011
5M90
DownloadVisualize
BU of 5m90 by Molmil
PCE reductive dehalogenase from S. multivorans in complex with 3,4,5-trifluorophenol
Descriptor: 3,4,5-tris(fluoranyl)phenol, BENZAMIDINE, GLYCEROL, ...
Authors:Kunze, C, Bommer, M, Hagen, W.R, Uksa, M, Dobbek, H, Schubert, T, Diekert, G.
Deposit date:2016-10-31
Release date:2017-07-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Cobamide-mediated enzymatic reductive dehalogenation via long-range electron transfer.
Nat Commun, 8, 2017
3RV4
DownloadVisualize
BU of 3rv4 by Molmil
Crystal structure of E.coli biotin carboxylase R16E mutant in complex with Mg-ADP and bicarbonate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BICARBONATE ION, Biotin carboxylase, ...
Authors:Chou, C.Y, Tong, L.
Deposit date:2011-05-05
Release date:2011-05-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural and biochemical studies on the regulation of biotin carboxylase by substrate inhibition and dimerization.
J.Biol.Chem., 286, 2011
5MH3
DownloadVisualize
BU of 5mh3 by Molmil
Crystal structure of a DM9 domain containing protein from Crassostrea gigas with K43A mutation
Descriptor: GLYCEROL, Natterin-3
Authors:Weinert, T, Warkentin, E, Pang, G.
Deposit date:2016-11-22
Release date:2017-12-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum.
Front Immunol, 8, 2017
5MA0
DownloadVisualize
BU of 5ma0 by Molmil
PCE reductive dehalogenase from S. multivorans in complex with 2,6-dichlorophenol
Descriptor: 2,6-dichlorophenol, GLYCEROL, IRON/SULFUR CLUSTER, ...
Authors:Kunze, C, Bommer, M, Hagen, W.R, Uksa, M, Dobbek, H, Schubert, T, Diekert, G.
Deposit date:2016-11-02
Release date:2017-07-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cobamide-mediated enzymatic reductive dehalogenation via long-range electron transfer.
Nat Commun, 8, 2017
5MJ6
DownloadVisualize
BU of 5mj6 by Molmil
Ligand-induced conformational change of Insulin-regulated aminopeptidase: insights on catalytic mechanism and active site plasticity.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BROMIDE ION, ...
Authors:Mpakali, A, Stratikos, E, Saridakis, E, Giastas, P.
Deposit date:2016-11-30
Release date:2017-04-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Ligand-Induced Conformational Change of Insulin-Regulated Aminopeptidase: Insights on Catalytic Mechanism and Active Site Plasticity.
J. Med. Chem., 60, 2017
7L4F
DownloadVisualize
BU of 7l4f by Molmil
Crystal structure of the DRM2-CAT DNA complex
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, DNA (5'-D(*AP*TP*TP*CP*CP*TP*CP*CP*TP*(C49)P*AP*TP*CP*CP*TP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*AP*GP*GP*AP*TP*GP*AP*GP*GP*AP*GP*GP*AP*AP*T)-3'), ...
Authors:Fang, J, Song, J.
Deposit date:2020-12-19
Release date:2021-08-04
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Sci Adv, 7, 2021

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon