PDB: 1081 件ウェブページステータス検索Chemie searchBIRD

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6OFN	Crystal structure of green fluorescent protein (GFP); S65T, T203(3-OMeY); ih circular permutant (50-51) 分子名称: Green fluorescent protein (GFP); S65T, T203(3-OMeY); ih circular permutant (50-51) 著者 Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. 登録日 2019-03-31 公開日 2019-07-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.649 Å) 主引用文献 Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019
6OFO	Crystal structure of split green fluorescent protein (GFP); s10 circular permutant (194-195) 分子名称: Green fluorescent protein (GFP); s10 circular permutant (194-195) 著者 Lin, C.-Y, Romei, M.G, Deller, M.C, Doukov, T.I, Boxer, S.G. 登録日 2019-03-31 公開日 2019-07-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.603 Å) 主引用文献 Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019
6OFL	Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51) 分子名称: Green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51) 著者 Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. 登録日 2019-03-31 公開日 2019-07-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019
1GGX	RED FLUORESCENT PROTEIN (FP583 OR DSRED(CLONTECH)) FROM DISCOSOMA SP. 分子名称: PROTEIN (FLUORESCENT PROTEIN FP583) 著者 Wall, M.A, Socolich, M.A, Ranganathan, R. 登録日 2000-10-05 公開日 2000-12-06 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The structural basis for red fluorescence in the tetrameric GFP homolog DsRed. Nat.Struct.Biol., 7, 2000
6NHV	Single particle reconstruction of DARPin and its bound GFP on a symmetric scaffold 分子名称: DARP14 - Subunit B, Subunit A-DARPin, superfolder GFP 著者 Liu, Y, Huynh, D, Yeates, T.O. 登録日 2018-12-24 公開日 2019-05-08 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold. Nat Commun, 10, 2019
7RRH	Crystal structure of fast switching R66M/M159T mutant of fluorescent protein Dronpa (Dronpa2) 分子名称: Fluorescent protein Dronpa 著者 Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. 登録日 2021-08-09 公開日 2021-10-13 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.747 Å) 主引用文献 Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme. J.Am.Chem.Soc., 144, 2022
7RRI	Crystal structure of fast switching S142A/M159T mutant of fluorescent protein Dronpa (Dronpa2) 分子名称: Fluorescent protein Dronpa 著者 Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. 登録日 2021-08-09 公開日 2021-10-13 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.643 Å) 主引用文献 Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme. J.Am.Chem.Soc., 144, 2022
7RRJ	Crystal structure of fast switching M159Q mutant of fluorescent protein Dronpa (Dronpa2) 分子名称: Fluorescent protein Dronpa 著者 Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. 登録日 2021-08-09 公開日 2021-10-13 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme. J.Am.Chem.Soc., 144, 2022
7RRK	Crystal structure of fast switching M159E mutant of fluorescent protein Dronpa (Dronpa2) 分子名称: Fluorescent protein Dronpa 著者 Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. 登録日 2021-08-09 公開日 2021-10-13 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.929 Å) 主引用文献 Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme. J.Am.Chem.Soc., 144, 2022
6RUM	Crystal structure of GFP-LAMA-G97 - a GFP enhancer nanobody with cpDHFR insertion and TMP and NADPH 分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GFP-LAMA-G97 a GFP enhancer nanobody with cpDHFR insertion, ... 著者 Farrants, H, Tarnawski, M, Mueller, T.G, Otsuka, S, Hiblot, J, Koch, B, Kueblbeck, M, Kraeusslich, H.-G, Ellenberg, J, Johnsson, K. 登録日 2019-05-28 公開日 2020-02-12 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Chemogenetic Control of Nanobodies. Nat.Methods, 17, 2020
4Q9Q	Crystal structure of an RNA aptamer bound to bromo-ligand analog in complex with Fab 分子名称: (5Z)-5-(3-bromobenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, Fab BL3-6, HEAVY CHAIN, ... 著者 Huang, H, Suslov, N.B, Li, N.-S, Shelke, S.A, Evans, M.E, Koldobskaya, Y, Rice, P.A, Piccirilli, J.A. 登録日 2014-05-01 公開日 2014-06-18 最終更新日 2017-07-26 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore. Nat.Chem.Biol., 10, 2014
4Q9R	Crystal structure of an RNA aptamer bound to trifluoroethyl-ligand analog in complex with Fab 分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Fab BL3-6, HEAVY CHAIN, ... 著者 Huang, H, Suslov, N.B, Li, N.-S, Shelke, S.A, Evans, M.E, Koldobskaya, Y, Rice, P.A, Piccirilli, J.A. 登録日 2014-05-01 公開日 2014-06-18 最終更新日 2017-07-26 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore. Nat.Chem.Biol., 10, 2014
2ZO7	Crystal Structure of a Kusabira-Cyan Mutant (KCY-R1), a Cyan/Green-Emitting GFP-Like Protein 分子名称: CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1) 著者 Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2008-05-06 公開日 2009-05-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Crystal structure of a new cyan fluorescent protein and its hue-shifted variants Biochemistry, 48, 2009
2ZO6	Crystal Structure of Kusabira-Cyan (KCY), a Cyan-Emitting GFP-Like Protein 分子名称: CYAN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN (KCY) 著者 Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2008-05-06 公開日 2009-05-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Crystal structure of a new cyan fluorescent protein and its hue-shifted variants Biochemistry, 48, 2009
3MGF	Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5 分子名称: Fluorescent protein 著者 Ebisawa, T, Yamamura, A, Ohtsuka, J, Kameda, Y, Hayakawa, K, Nagata, K, Tanokura, M. 登録日 2010-04-06 公開日 2011-03-16 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5 To be Published
6MWQ	Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP 分子名称: DARPin, Muscle-type aldolase chimeric fusion, Green fluorescent protein 著者 Weaver, S.J, Yao, Q. 登録日 2018-10-30 公開日 2018-11-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Fusion of DARPin to Aldolase Enables Visualization of Small Protein by Cryo-EM. Structure, 27, 2019
6H01	Crystal structure of a domain-swapped dark-state sfGFP containing the unnatural amino acid ortho-nitrobenzyl-tyrosine (ONBY) at residue 66 分子名称: Green fluorescent protein 著者 Kesgin-Schaefer, S, Tidow, H. 登録日 2018-07-06 公開日 2019-04-24 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.776 Å) 主引用文献 Crystal structure of a domain-swapped photoactivatable sfGFP variant provides evidence for GFP folding pathway. Febs J., 286, 2019
1Z1Q	Y66L Variant of Enhanced Green Fluorescent Protein with 374-nm Absorbing Chromophore 分子名称: Green Fluorescent Protein, SODIUM ION 著者 Rosenow, M.A, Patel, H.N, Wachter, R.M. 登録日 2005-03-04 公開日 2005-06-21 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Oxidative Chemistry in the GFP Active Site Leads to Covalent Cross-Linking of a Modified Leucine Side Chain with a Histidine Imidazole: Implications for the Mechanism of Chromophore Formation. Biochemistry, 44, 2005
1Z1P	Y66L variant of Enhanced Green Fluorescent Protein with 412-nm Absorbing Chromophore 分子名称: green fluorescent protein 著者 Rosenow, M.A, Patel, H.N, Wachter, R.M. 登録日 2005-03-04 公開日 2005-06-21 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Oxidative Chemistry in the GFP Active Site Leads to Covalent Cross-Linking of a Modified Leucine Side Chain with a Histidine Imidazole: Implications for the Mechanism of Chromophore Formation. Biochemistry, 44, 2005
6FWW	GFP/KKK. A redesigned GFP with improved solubility 分子名称: Green fluorescent protein 著者 Varejao, N, Lascorz, J, Gil-Garcia, M, Diaz-Caballero, M, Navarro, S, Ventura, S, Reverter, D. 登録日 2018-03-07 公開日 2018-08-01 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.131 Å) 主引用文献 Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein Solubility. Mol. Pharm., 15, 2018
3KPX	Crystal Structure Analysis of photoprotein clytin 分子名称: Apophotoprotein clytin-3, C2-HYDROPEROXY-COELENTERAZINE, CALCIUM ION 著者 Titushin, M.S, Li, Y, Stepanyuk, G.A, Wang, B.-C, Lee, J, Vysotski, E.S, Liu, Z.-J. 登録日 2009-11-17 公開日 2010-10-06 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.899 Å) 主引用文献 NMR derived topology of a GFP-photoprotein energy transfer complex J.Biol.Chem., 285, 2010
4PPJ	Crystal structure of Phanta, a weakly fluorescent photochromic GFP-like protein. ON state 分子名称: Monomeric Azami Green 著者 Don Paul, C, Traore, D.A.K, Devenish, R.J, Close, D, Bell, T, Bradbury, A, Wilce, M.C.J, Prescott, M. 登録日 2014-02-27 公開日 2015-04-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 X-Ray Crystal Structure and Properties of Phanta, a Weakly Fluorescent Photochromic GFP-Like Protein. Plos One, 10, 2015
8FI2	Structure of Lettuce C20T bound to DFHBI-1T 分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... 著者 Passalacqua, L.F.M, Ferre-D'Amare, A.R. 登録日 2022-12-15 公開日 2023-05-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
8FI0	Structure of Lettuce aptamer bound to DFAME 分子名称: Lettuce DNA aptamer, MAGNESIUM ION, POTASSIUM ION, ... 著者 Passalacqua, L.F.M, Ferre-D'Amare, A.R. 登録日 2022-12-15 公開日 2023-05-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
8FHV	Structure of Lettuce aptamer bound to DFHBI-1T with thallium I ions 分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... 著者 Passalacqua, L.F.M, Ferre-D'Amare, A.R. 登録日 2022-12-15 公開日 2023-05-10 最終更新日 2023-07-05 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023

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