Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6WZJ
DownloadVisualize
BU of 6wzj by Molmil
LY3041658 Fab bound to CXCL2
Descriptor: C-X-C motif chemokine 2, LY3041658 Fab Heavy Chain, LY3041658 Fab Light Chain
Authors:Durbin, J.D, Druzina, Z.
Deposit date:2020-05-14
Release date:2020-11-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Discovery and characterization of a neutralizing pan-ELR+CXC chemokine monoclonal antibody.
Mabs, 12
6O6K
DownloadVisualize
BU of 6o6k by Molmil
HUaa 19bp SYM DNA pH 5.5
Descriptor: DNA (5'-D(P*AP*TP*TP*TP*CP*AP*TP*GP*AP*T)-3'), DNA (5'-D(P*CP*AP*TP*CP*AP*TP*GP*AP*AP*A)-3'), DNA-binding protein HU-alpha
Authors:Remesh, S.G, Hammel, M.
Deposit date:2019-03-06
Release date:2020-03-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.601 Å)
Cite:Nucleoid remodeling during environmental adaptation is regulated by HU-dependent DNA bundling.
Nat Commun, 11, 2020
3ZI5
DownloadVisualize
BU of 3zi5 by Molmil
Crystal STRUCTURE OF RESTRICTION ENDONUCLEASE BFII C-TERMINAL RECOGNITION DOMAIN IN COMPLEX WITH COGNATE DNA
Descriptor: 5'-D(*AP*GP*CP*AP*CP*TP*GP*GP*GP*TP*CP*GP)-3', 5'-D(*CP*GP*AP*CP*CP*CP*AP*GP*TP*GP*CP*TP)-3', RESTRICTION ENDONUCLEASE
Authors:Golovenko, D, Manakova, E, Zakrys, L, Zaremba, M, Sasnauskas, G, Grazulis, S, Siksnys, V.
Deposit date:2013-01-03
Release date:2014-01-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Insight Into the Specificity of the B3 DNA-Binding Domains Provided by the Co-Crystal Structure of the C-Terminal Fragment of Bfii Restriction Enzyme
Nucleic Acids Res., 42, 2014
1Z9H
DownloadVisualize
BU of 1z9h by Molmil
Microsomal prostaglandin E synthase type-2
Descriptor: ACETATE ION, CHLORIDE ION, INDOMETHACIN, ...
Authors:Yamada, T, Komoto, J, Watanabe, K, Ohmiya, Y, Takusagawa, F.
Deposit date:2005-04-02
Release date:2005-05-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure and Possible Catalytic Mechanism of Microsomal Prostaglandin E Synthase Type 2 (mPGES-2).
J.Mol.Biol., 348, 2005
2LIO
DownloadVisualize
BU of 2lio by Molmil
Solution NMR Structure of BfR322 from Bacteroides fragilis, Northeast Structural Genomics Consortium Target BfR322
Descriptor: Uncharacterized protein
Authors:Mills, J.L, Lee, H, Lee, D, Ciccosanti, C, Janjua, H, Nair, R, Rost, B, Acton, T.B, Xiao, R, Everett, J.K, Prestegard, J.H, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-08-29
Release date:2011-09-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Northeast Structural Genomics Consortium Target BfR322
To be Published
4NZJ
DownloadVisualize
BU of 4nzj by Molmil
Crystal structure of a putative alpha-galactosidase (BF1418) from Bacteroides fragilis NCTC 9343 at 1.57 A resolution
Descriptor: GLYCEROL, Putative alpha-galactosidase
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2013-12-12
Release date:2013-12-25
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Crystal structure of a putative alpha-galactosidase (BF1418) from Bacteroides fragilis NCTC 9343 at 1.57 A resolution
To be published
4ON1
DownloadVisualize
BU of 4on1 by Molmil
Crystal Structure of metalloproteinase-II from Bacteroides fragilis
Descriptor: GLYCEROL, Putative metalloprotease II, ZINC ION
Authors:Aleshin, A.E, Liddington, R.C, Shiryaev, S.A, Strongin, A.Y.
Deposit date:2014-01-28
Release date:2014-04-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Structural and functional diversity of metalloproteinases encoded by the Bacteroides fragilis pathogenicity island.
Febs J., 281, 2014
2FG6
DownloadVisualize
BU of 2fg6 by Molmil
N-succinyl-L-ornithine transcarbamylase from B. fragilis complexed with sulfate and N-succinyl-L-norvaline
Descriptor: N-(3-CARBOXYPROPANOYL)-L-NORVALINE, SULFATE ION, putative ornithine carbamoyltransferase
Authors:Shi, D, Yu, X, Malamy, M.H, Allewell, N.M, Mendel, T.
Deposit date:2005-12-21
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure and catalytic mechanism of a novel N-succinyl-L-ornithine transcarbamylase in arginine biosynthesis of Bacteroides fragilis.
J.Biol.Chem., 281, 2006
4PPY
DownloadVisualize
BU of 4ppy by Molmil
Crystal structure of a putative acylhydrolase (BF3764) from Bacteroides fragilis NCTC 9343 at 2.00 A resolution
Descriptor: Putative acylhydrolase
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2014-02-27
Release date:2014-04-02
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a putative acylhydrolase (BF3764) from Bacteroides fragilis NCTC 9343 at 2.00 A resolution
To be published
4OUQ
DownloadVisualize
BU of 4ouq by Molmil
Crystal structure of a DUF4783 family protein (BF1468) from Bacteroides fragilis YCH46 at 1.55 A resolution
Descriptor: Uncharacterized protein
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2014-02-18
Release date:2014-04-30
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of a hypothetical protein (BF1468) from Bacteroides fragilis YCH46 at 1.55 A resolution
To be published
4PY9
DownloadVisualize
BU of 4py9 by Molmil
Crystal structure of an exopolyphosphatase-related protein from Bacteroides Fragilis. Northeast Structural Genomics target BFR192
Descriptor: PHOSPHATE ION, Putative exopolyphosphatase-related protein, SODIUM ION
Authors:Seetharaman, J, Abashidze, M, Wang, H, Janjua, H, Foote, E.L, Xiao, R, Nair, R, Everett, J.K, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2014-03-26
Release date:2014-06-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of an exopolyphosphatase-related protein from Bacteroides Fragilis. Northeast Structural Genomics target BFR192
To be Published
2O48
DownloadVisualize
BU of 2o48 by Molmil
Crystal structure of Mammalian Dimeric Dihydrodiol Dehydrogenase
Descriptor: BETA-MERCAPTOETHANOL, Dimeric dihydrodiol dehydrogenase, P-HYDROXYACETOPHENONE, ...
Authors:Carbone, V, El-Kabbani, O.
Deposit date:2006-12-04
Release date:2007-07-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structures of dimeric dihydrodiol dehydrogenase apoenzyme and inhibitor complex: probing the subunit interface with site-directed mutagenesis.
Proteins, 70, 2008
2O4U
DownloadVisualize
BU of 2o4u by Molmil
Crystal structure of Mammalian Dimeric Dihydrodiol Dehydrogenase
Descriptor: BETA-MERCAPTOETHANOL, Dimeric dihydrodiol dehydrogenase, GLYCEROL, ...
Authors:Carbone, V, El-Kabbani, O.
Deposit date:2006-12-04
Release date:2007-07-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of dimeric dihydrodiol dehydrogenase apoenzyme and inhibitor complex: probing the subunit interface with site-directed mutagenesis.
Proteins, 70, 2008
2FG7
DownloadVisualize
BU of 2fg7 by Molmil
N-succinyl-L-ornithine transcarbamylase from B. fragilis complexed with carbamoyl phosphate and N-succinyl-L-norvaline
Descriptor: N-(3-CARBOXYPROPANOYL)-L-NORVALINE, PHOSPHORIC ACID MONO(FORMAMIDE)ESTER, SULFATE ION, ...
Authors:Shi, D, Yu, X, Malamy, M.H, Allewell, N.M, Tuchman, M.
Deposit date:2005-12-21
Release date:2006-05-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure and catalytic mechanism of a novel N-succinyl-L-ornithine transcarbamylase in arginine biosynthesis of Bacteroides fragilis.
J.Biol.Chem., 281, 2006
4PYS
DownloadVisualize
BU of 4pys by Molmil
The crystal structure of beta-N-acetylhexosaminidase from Bacteroides fragilis NCTC 9343
Descriptor: FORMIC ACID, GLYCEROL, ZINC ION, ...
Authors:Tan, K, Hatzos-Skintges, C, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-03-27
Release date:2014-06-18
Method:X-RAY DIFFRACTION (1.822 Å)
Cite:The crystal structure of beta-N-acetylhexosaminidase from Bacteroides fragilis NCTC 9343
To be Published
2P1G
DownloadVisualize
BU of 2p1g by Molmil
Crystal structure of a putative xylanase from Bacteroides fragilis
Descriptor: Putative xylanase
Authors:Bonanno, J.B, Freeman, J, Bain, K.T, Zhang, F, Sridhar, V, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-03-05
Release date:2007-03-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a putative xylanase from Bacteroides fragilis
To be Published
4OGZ
DownloadVisualize
BU of 4ogz by Molmil
Crystal structure of a putative alpha-galactosidase/melibiase (BF4189) from Bacteroides fragilis NCTC 9343 at 2.00 A resolution
Descriptor: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Putative alpha-galactosidase/melibiase, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2014-01-16
Release date:2014-02-05
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a putative alpha-galactosidase/melibiase (BF4189) from Bacteroides fragilis NCTC 9343 at 2.00 A resolution
To be published
2POQ
DownloadVisualize
BU of 2poq by Molmil
Dimeric Dihydrodiol Dehydrogenase complexed with inhibitor, Isoascorbic acid
Descriptor: BETA-MERCAPTOETHANOL, Dimeric dihydrodiol dehydrogenase, ISOASCORBIC ACID, ...
Authors:Carbone, V, El-Kabbani, O.
Deposit date:2007-04-27
Release date:2007-07-31
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structure of monkey dimeric dihydrodiol dehydrogenase in complex with isoascorbic acid.
Acta Crystallogr.,Sect.D, 64, 2008
3T2L
DownloadVisualize
BU of 3t2l by Molmil
Crystal structure of a Putative cell adhesion protein (BF1858) from Bacteroides fragilis NCTC 9343 at 2.33 A resolution
Descriptor: CHLORIDE ION, GLYCEROL, Putative cell adhesion protein
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2011-07-22
Release date:2011-08-10
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
3SCY
DownloadVisualize
BU of 3scy by Molmil
Crystal structure of a putative 6-phosphogluconolactonase (BF1038) from Bacteroides fragilis NCTC 9343 at 1.50 A resolution
Descriptor: Hypothetical bacterial 6-phosphogluconolactonase, MAGNESIUM ION, SODIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2011-06-08
Release date:2011-07-20
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of a Hypothetical bacterial 6-phosphogluconolactonase (BF1038) from Bacteroides fragilis NCTC 9343 at 1.50 A resolution
To be published
3SBU
DownloadVisualize
BU of 3sbu by Molmil
Crystal structure of a ntf2-like protein (BF2862) from Bacteroides fragilis NCTC 9343 at 2.15 A resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Hypothetical ntf2-like protein
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2011-06-06
Release date:2011-07-13
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of a Hypothetical ntf2-like protein (BF2862) from Bacteroides fragilis NCTC 9343 at 2.15 A resolution
To be published
3S5T
DownloadVisualize
BU of 3s5t by Molmil
Crystal structure of a member of duf3298 family (BF2082) from bacteroides fragilis nctc 9343 at 2.30 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, DUF3298 family protein, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2011-05-23
Release date:2011-06-29
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a Member of DUF3298 family (BF2082) from Bacteroides fragilis NCTC 9343 at 2.30 A resolution
To be published
3SY6
DownloadVisualize
BU of 3sy6 by Molmil
Crystal structure of a fimbrial protein BF1861 [Bacteroides fragilis NCTC 9343] (BF1861) from Bacteroides fragilis NCTC 9343 at 1.90 A resolution
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Fimbrial protein BF1861
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2011-07-15
Release date:2011-08-24
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
3W5W
DownloadVisualize
BU of 3w5w by Molmil
Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, Putative exopolyphosphatase-related protein
Authors:Uemura, Y, Nakagawa, N, Wakamatsu, T, Montelione, G.T, Hunt, J.F, Masui, R, Kuramitsu, S.
Deposit date:2013-02-07
Release date:2013-07-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins.
Febs Lett., 587, 2013
3D6J
DownloadVisualize
BU of 3d6j by Molmil
Crystal structure of Putative haloacid dehalogenase-like hydrolase from Bacteroides fragilis
Descriptor: GLYCEROL, PHOSPHATE ION, Putative haloacid dehalogenase-like hydrolase
Authors:Chang, C, Wu, R, Cobb, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-05-19
Release date:2008-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Putative haloacid dehalogenase-like hydrolase from Bacteroides fragilis
To be Published

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon