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7YG6
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BU of 7yg6 by Molmil
Cryo-EM structure of the EfPiwi(N959K) in complex with piRNA
Descriptor: MAGNESIUM ION, Piwi, piRNA
Authors:Li, Z.Q, Liu, H.B, Wu, J.P, Shen, E.Z.
Deposit date:2022-07-11
Release date:2024-01-24
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Mammalian PIWI-piRNA-target complexes reveal features for broad and efficient target silencing.
Nat.Struct.Mol.Biol., 2024
7YGN
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BU of 7ygn by Molmil
Cryo-EM structure of the Mili in complex with piRNA
Descriptor: MAGNESIUM ION, Piwi-like protein 2, piRNA
Authors:Li, Z.Q, Liu, H.B, Wu, J.P, Shen, E.Z.
Deposit date:2022-07-11
Release date:2024-01-24
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Mammalian PIWI-piRNA-target complexes reveal features for broad and efficient target silencing.
Nat.Struct.Mol.Biol., 2024
1KKS
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BU of 1kks by Molmil
Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression
Descriptor: 5'-R(*GP*GP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*C)-3'
Authors:Zanier, K, Luyten, I, Crombie, C, Muller, B, Schuemperli, D, Linge, J.P, Nilges, M, Sattler, M.
Deposit date:2001-12-10
Release date:2002-03-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression.
RNA, 8, 2002
7L3O
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BU of 7l3o by Molmil
Crystal Structure of the RNA binding domain of Threonyl-tRNA synthetase from Cryptosporidium parvum Iowa II
Descriptor: CALCIUM ION, Threonyl-tRNA synthetase, ZINC ION
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-12-18
Release date:2020-12-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of the RNA binding domain of Threonyl-tRNA synthetase from Cryptosporidium parvum Iowa II
to be published
1EUJ
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BU of 1euj by Molmil
A NOVEL ANTI-TUMOR CYTOKINE CONTAINS A RNA-BINDING MOTIF PRESENT IN AMINOACYL-TRNA SYNTHETASES
Descriptor: ENDOTHELIAL MONOCYTE ACTIVATING POLYPEPTIDE 2
Authors:Kim, Y, Shin, J, Li, R, Cheong, C, Kim, S.
Deposit date:2000-04-17
Release date:2000-09-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A novel anti-tumor cytokine contains an RNA binding motif present in aminoacyl-tRNA synthetases.
J.Biol.Chem., 275, 2000
3J5S
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BU of 3j5s by Molmil
EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S7, ...
Authors:Hashem, Y.
Deposit date:2013-11-15
Release date:2014-01-08
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics.
Nat.Struct.Mol.Biol., 21, 2014
5GL7
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BU of 5gl7 by Molmil
Crystal structure of a truncated human cytosolic methionyl-tRNA synthetase
Descriptor: GLYCEROL, Methionine--tRNA ligase, cytoplasmic, ...
Authors:Cho, H.Y, Lee, H.J, Kang, B.S.
Deposit date:2016-07-08
Release date:2017-07-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.013 Å)
Cite:Crystal structure of a truncated human cytosolic methionyl-tRNA synthetase
To Be Published
5GOY
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BU of 5goy by Molmil
The crystal structure of human cytosolic methionyl-tRNA synthetase in complex with methionine
Descriptor: METHIONINE, Methionine--tRNA ligase, cytoplasmic, ...
Authors:Lee, H.J, Cho, H.Y, Kang, B.S.
Deposit date:2016-07-30
Release date:2017-08-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.278 Å)
Cite:The crystal structure of human cytosolic methionyl-tRNA synthetase in complex with methionine
To be published
5NOH
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BU of 5noh by Molmil
HRSV M2-1 core domain
Descriptor: Transcription elongation factor M2-1
Authors:Josts, I, Almeida Hernandez, Y, Molina, I.G, de Prat-Gay, G, Tidow, H.
Deposit date:2017-04-12
Release date:2018-01-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and stability of the Human respiratory syncytial virus M2-1RNA-binding core domain reveals a compact and cooperative folding unit.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5NKX
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BU of 5nkx by Molmil
HRSV M2-1 core domain, P3221 crystal form
Descriptor: M2-1
Authors:Almeida Hernandez, Y, Josts, I, Molina, I.G, de Pray-Gay, G, Tidow, H.
Deposit date:2017-04-03
Release date:2018-01-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.00008678 Å)
Cite:Structure and stability of the Human respiratory syncytial virus M2-1RNA-binding core domain reveals a compact and cooperative folding unit.
Acta Crystallogr F Struct Biol Commun, 74, 2018
1D2D
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BU of 1d2d by Molmil
Hamster EprS second repeated element. NMR, 5 structures
Descriptor: TRNA SYNTHETASE
Authors:Cahuzac, B, Berthonneau, E, Birlirakis, N, Guittet, E, Mirande, M.
Deposit date:1999-09-23
Release date:2000-05-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A recurrent RNA-binding domain is appended to eukaryotic aminoacyl-tRNA synthetases.
EMBO J., 19, 2000
1FL0
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BU of 1fl0 by Molmil
CRYSTAL STRUCTURE OF THE EMAP2/RNA-BINDING DOMAIN OF THE P43 PROTEIN FROM HUMAN AMINOACYL-TRNA SYNTHETASE COMPLEX
Descriptor: ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE II
Authors:Renault, L, Kerjan, P, Pasqualato, S, Menetrey, J, Robinson, J.-C, Kawaguchi, S, Vassylyev, D.G, Yokoyama, S, Mirande, M, Cherfils, J.
Deposit date:2000-08-11
Release date:2000-12-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the EMAPII domain of human aminoacyl-tRNA synthetase complex reveals evolutionary dimer mimicry.
EMBO J., 20, 2001
7YP8
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BU of 7yp8 by Molmil
Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with Leucyl-sulfamoyl 3-deazaadenosine
Descriptor: 1,2-ETHANEDIOL, Leucine--tRNA ligase, MAGNESIUM ION, ...
Authors:Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D.
Deposit date:2022-08-02
Release date:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The essential role of a structured water in base recognition of Class II aminoacyl-tRNA synthetases
To be published
1E7Z
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BU of 1e7z by Molmil
Crystal structure of the EMAP2/RNA binding domain of the p43 protein from human aminoacyl-tRNA synthetase complex
Descriptor: ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE II, MERCURY (II) ION
Authors:Pasqualato, S, Kerjan, P, Renault, L, Menetrey, J, Mirande, M, Cherfils, J.
Deposit date:2000-09-13
Release date:2000-11-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of the Emapii Domain of Human Aminoacyl-tRNA Synthetase Complex Reveals Evolutionary Dimeric Mimicry
Embo J., 20, 2001
219D
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BU of 219d by Molmil
DNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)-3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETY
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, James, T.L.
Deposit date:1995-07-25
Release date:1995-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraints.
Biochemistry, 34, 1995
2BCY
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BU of 2bcy by Molmil
Crystal Structure of a minimal, mutant all-RNA hairpin ribozyme (U39C, G8MTU)
Descriptor: 5'-R(*CP*GP*GP*UP*GP*AP*(MTU)P*AP*AP*GP*GP*G)-3', 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3', 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*G)-3', ...
Authors:Salter, J.D, Wedekind, J.E.
Deposit date:2005-10-19
Release date:2006-02-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Water in the Active Site of an All-RNA Hairpin Ribozyme and Effects of Gua8 Base Variants on the Geometry of Phosphoryl Transfer.
Biochemistry, 45, 2006
2BCZ
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BU of 2bcz by Molmil
Crystal Structure of a minimal, mutant all-RNA hairpin ribozyme (U39C, G8I, 2'deoxy A-1)
Descriptor: 5'-R(*CP*GP*GP*UP*GP*AP*IP*AP*AP*GP*GP*G)-3', 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3', 5'-R(*UP*CP*CP*CP*(DA)P*GP*UP*CP*CP*AP*CP*CP*G)-3'), ...
Authors:Salter, J.D, Wedekind, J.E.
Deposit date:2005-10-19
Release date:2006-02-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Water in the Active Site of an All-RNA Hairpin Ribozyme and Effects of Gua8 Base Variants on the Geometry of Phosphoryl Transfer.
Biochemistry, 45, 2006
7DPI
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BU of 7dpi by Molmil
Plasmodium falciparum cytoplasmic Phenylalanyl-tRNA synthetase in complex with BRD7929
Descriptor: (8R,9S,10S)-10-[(dimethylamino)methyl]-N-(4-methoxyphenyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamide, MAGNESIUM ION, Phenylalanine--tRNA ligase, ...
Authors:Manmohan, S, Malhotra, N, Harlos, K, Manickam, Y, Sharma, A.
Deposit date:2020-12-19
Release date:2022-03-23
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.597 Å)
Cite:Inhibition of Plasmodium falciparum phenylalanine tRNA synthetase provides opportunity for antimalarial drug development.
Structure, 30, 2022
8VC5
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BU of 8vc5 by Molmil
Crystal structure of glutamyl-tRNA synthetase GluRS from Pseudomonas aeruginosa (Zinc bound)
Descriptor: CITRATE ANION, GLYCEROL, Glutamate--tRNA ligase, ...
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2023-12-13
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of glutamyl-tRNA synthetase GluRS from Pseudomonas aeruginosa (Zinc bound)
To be published
5YYM
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BU of 5yym by Molmil
Crystal structures of E.coli arginyl-trna synthetase (argrs) in complex with substrate Arg
Descriptor: ARGININE, Arginine--tRNA ligase
Authors:Zhou, M, Ye, S, Stephen, P, Zhang, R.G, Wang, E.D, Giege, R, Lin, S.X.
Deposit date:2017-12-10
Release date:2018-12-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structures Of E.Coli Arginyl-Trna Synthetase (Argrs) In Complex With Substrates
To Be Published
7ROR
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BU of 7ror by Molmil
Plasmodium falciparum tyrosyl-tRNA synthetase in complex with tyrosine-AMP
Descriptor: 5'-O-[(S)-{[(2S)-2-amino-3-(4-hydroxyphenyl)propanoyl]oxy}(hydroxy)phosphoryl]adenosine, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Metcalfe, R.D, Xie, S.C, Morton, C.J, Tilley, L, Griffin, M.D.W.
Deposit date:2021-08-02
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Reaction hijacking of tyrosine tRNA synthetase as a new whole-of-life-cycle antimalarial strategy.
Science, 376, 2022
7ROS
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BU of 7ros by Molmil
Plasmodium falciparum tyrosyl-tRNA synthetase in complex with ML901-Tyr
Descriptor: CHLORIDE ION, MAGNESIUM ION, Tyrosine--tRNA ligase, ...
Authors:Metcalfe, R.D, Xie, S.C, Morton, C.J, Tilley, L, Griffin, M.D.W.
Deposit date:2021-08-02
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Reaction hijacking of tyrosine tRNA synthetase as a new whole-of-life-cycle antimalarial strategy.
Science, 376, 2022
7ROT
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BU of 7rot by Molmil
Plasmodium falciparum tyrosyl-tRNA synthetase, S234C mutant, in complex with ML901-Tyr
Descriptor: CHLORIDE ION, MAGNESIUM ION, Tyrosine--tRNA ligase, ...
Authors:Metcalfe, R.D, Xie, S.C, Morton, C.J, Tilley, L, Griffin, M.D.W.
Deposit date:2021-08-02
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Reaction hijacking of tyrosine tRNA synthetase as a new whole-of-life-cycle antimalarial strategy.
Science, 376, 2022
2AP5
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BU of 2ap5 by Molmil
Solution Structure of the C27A ScYLV P1-P2 Frameshifting Pseudoknot, Average Structure
Descriptor: C27A Sugarcane Yellow Leaf Virus RNA pseudoknot
Authors:Cornish, P.V, Giedroc, D.P.
Deposit date:2005-08-15
Release date:2006-09-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical
Rna, 12, 2006
6JXM
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BU of 6jxm by Molmil
Crystal Structure of phi29 pRNA domain II
Descriptor: BARIUM ION, MAGNESIUM ION, RNA (97-mer)
Authors:Cai, R, Price, I.R, Ding, F, Wu, F, Chen, T, Zhang, Y, Liu, G, Jardine, P.J, Lu, C, Ke, A.
Deposit date:2019-04-24
Release date:2019-08-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:ATP/ADP modulates gp16-pRNA conformational change in the Phi29 DNA packaging motor.
Nucleic Acids Res., 47, 2019

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PDB entries from 2024-08-07

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