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3ZX8
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BU of 3zx8 by Molmil
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus
Descriptor: CAPSID PROTEIN
Authors:Bakker, S.E, Robottom, J, Hogle, J.M, Maeda, A, Pearson, A.R, Stockley, P.G, Ranson, N.A, Harrison, S.C.
Deposit date:2011-08-08
Release date:2012-07-18
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Isolation of an Asymmetric RNA Uncoating Intermediate for a Single-Stranded RNA Plant Virus.
J.Mol.Biol., 417, 2012
8RI5
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BU of 8ri5 by Molmil
Crystal structure of transplatin/B-DNA adduct obtained upon 48 h of soaking
Descriptor: AMMONIA, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, ...
Authors:Tito, G, Troisi, R, Ferraro, G, Sica, F, Merlino, A.
Deposit date:2023-12-18
Release date:2024-02-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.415 Å)
Cite:On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer.
Dalton Trans, 53, 2024
3ZX9
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BU of 3zx9 by Molmil
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus
Descriptor: CAPSID PROTEIN
Authors:Bakker, S.E, Robottom, J, Pearson, A.R, Stockley, P.G, Ranson, N.A.
Deposit date:2011-08-08
Release date:2012-07-18
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Isolation of an Asymmetric RNA Uncoating Intermediate for a Single-Stranded RNA Plant Virus.
J.Mol.Biol., 417, 2012
2UKD
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BU of 2ukd by Molmil
UMP/CMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Schlichting, I, Reinstein, J.
Deposit date:1997-05-20
Release date:1998-05-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of active conformations of UMP kinase from Dictyostelium discoideum suggest phosphoryl transfer is associative.
Biochemistry, 36, 1997
2RAP
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BU of 2rap by Molmil
THE SMALL G PROTEIN RAP2A IN COMPLEX WITH GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RAP2A
Authors:Cherfils, J, Menetrey, J, Lebras, G.
Deposit date:1998-05-06
Release date:1998-06-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of the small G protein Rap2A in complex with its substrate GTP, with GDP and with GTPgammaS.
EMBO J., 16, 1997
2RB2
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BU of 2rb2 by Molmil
3-methylbenzylazide in complex with T4 lysozyme L99A
Descriptor: 1-(azidomethyl)-3-methylbenzene, Lysozyme, PHOSPHATE ION
Authors:Graves, A.P, Boyce, S.E, Shoichet, B.K.
Deposit date:2007-09-17
Release date:2008-03-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.463 Å)
Cite:Rescoring docking hit lists for model cavity sites: predictions and experimental testing.
J.Mol.Biol., 377, 2008
1KIP
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BU of 1kip by Molmil
FV MUTANT Y(B 32)A (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor: LYSOZYME, MONOCLONAL ANTIBODY D1.3
Authors:Fields, B.A, Poljak, R.J, Mariuzza, R.A.
Deposit date:1996-10-23
Release date:1996-12-23
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Hydrogen bonding and solvent structure in an antigen-antibody interface. Crystal structures and thermodynamic characterization of three Fv mutants complexed with lysozyme.
Biochemistry, 35, 1996
2RBR
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BU of 2rbr by Molmil
2-phenoxyethanol in complex with T4 lysozyme L99A/M102Q
Descriptor: 2-phenoxyethanol, Lysozyme, PHOSPHATE ION
Authors:Graves, A.P, Boyce, S.E, Shoichet, B.K.
Deposit date:2007-09-19
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.433 Å)
Cite:Rescoring docking hit lists for model cavity sites: predictions and experimental testing.
J.Mol.Biol., 377, 2008
1VWL
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BU of 1vwl by Molmil
STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2, PH 3.5, I222 COMPLEX
Descriptor: PENTANOIC ACID, PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN
Authors:Katz, B.A, Cass, R.T.
Deposit date:1997-03-03
Release date:1998-03-18
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0.
J.Biol.Chem., 272, 1997
1VWK
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BU of 1vwk by Molmil
STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2
Descriptor: PENTANOIC ACID, PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN
Authors:Katz, B.A, Cass, R.T.
Deposit date:1997-03-03
Release date:1998-03-18
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0.
J.Biol.Chem., 272, 1997
2RBS
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BU of 2rbs by Molmil
(r)(+)-3-chloro-1-phenyl-1-propanol in complex with T4 lysozyme L99A/M102Q
Descriptor: (1R)-3-chloro-1-phenylpropan-1-ol, Lysozyme, PHOSPHATE ION
Authors:Graves, A.P, Boyce, S.E, Shoichet, B.K.
Deposit date:2007-09-19
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.557 Å)
Cite:Rescoring docking hit lists for model cavity sites: predictions and experimental testing.
J.Mol.Biol., 377, 2008
2RAZ
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BU of 2raz by Molmil
4-(methylthio)nitrobenzene in complex with T4 lysozyme L99A
Descriptor: 1-(methylsulfanyl)-4-nitrobenzene, Lysozyme, PHOSPHATE ION
Authors:Graves, A.P, Boyce, S.E, Shoichet, B.K.
Deposit date:2007-09-17
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.641 Å)
Cite:Rescoring docking hit lists for model cavity sites: predictions and experimental testing.
J.Mol.Biol., 377, 2008
2RBP
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BU of 2rbp by Molmil
2-(n-propylthio)ethanol in complex with T4 lysozyme L99A/M102Q
Descriptor: 2-(propylsulfanyl)ethanol, Lysozyme, PHOSPHATE ION
Authors:Graves, A.P, Boyce, S.E, Shoichet, B.K.
Deposit date:2007-09-19
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.467 Å)
Cite:Rescoring docking hit lists for model cavity sites: predictions and experimental testing.
J.Mol.Biol., 377, 2008
8T2I
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BU of 8t2i by Molmil
Negative stain EM assembly of MYC, JAZ, and NINJA complex
Descriptor: AFP homolog 2, Maltose/maltodextrin-binding periplasmic protein, Protein TIFY 10A, ...
Authors:Zhou, X.E, Zhang, Y, Zhou, Y, He, Q, Cao, X, Kariapper, L, Suino-Powell, K, Zhu, Y, Zhang, F, Karsten, M.
Deposit date:2023-06-06
Release date:2023-06-28
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (10.4 Å)
Cite:Assembly of JAZ-JAZ and JAZ-NINJA complexes in jasmonate signaling.
Plant Commun., 4, 2023
1LGW
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BU of 1lgw by Molmil
T4 Lysozyme Mutant L99A/M102Q Bound by 2-fluoroaniline
Descriptor: 2-FLUOROANILINE, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Wei, B.Q, Baase, W.A, Weaver, L.H, Matthews, B.W, Shoichet, B.K.
Deposit date:2002-04-16
Release date:2002-05-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A Model Binding Site for Testing Scoring Functions in Molecular Docking
J.Mol.Biol., 322, 2002
2VR7
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BU of 2vr7 by Molmil
Crystal Structure of G85R ALS mutant of Human Cu,Zn Superoxide Dismutase (CuZnSOD) at 1.58 A resolution
Descriptor: COPPER (II) ION, SULFATE ION, SUPEROXIDE DISMUTASE [CU-ZN], ...
Authors:Antonyuk, S, Cao, X, Seetharaman, S.V, Whitson, L.J, Taylor, A.B, Holloway, S.P, Strange, R.W, Doucette, P.A, Tiwari, A, Hayward, L.J, Padua, S, Cohlberg, J.A, Selverstone Valentine, J, Hasnain, S.S, Hart, P.J.
Deposit date:2008-03-28
Release date:2008-04-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structures of the G85R Variant of Sod1 in Familial Amyotrophic Lateral Sclerosis.
J.Biol.Chem., 283, 2008
2VRQ
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BU of 2vrq by Molmil
STRUCTURE OF AN INACTIVE MUTANT OF ARABINOFURANOSIDASE FROM THERMOBACILLUS XYLANILYTICUS IN COMPLEX WITH A PENTASACCHARIDE
Descriptor: ALPHA-L-ARABINOFURANOSIDASE, PHOSPHATE ION, alpha-L-arabinofuranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, ...
Authors:Paes, G, Skov, L.K, Odonohue, M.J, Remond, C, Kastrup, J.S, Gajhede, M, Mirza, O.
Deposit date:2008-04-09
Release date:2008-07-01
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Structure of the Complex between a Branched Pentasaccharide and Thermobacillus Xylanilyticus Gh-51 Arabinofuranosidase Reveals Xylan-Binding Determinants and Induced Fit.
Biochemistry, 47, 2008
2W8J
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BU of 2w8j by Molmil
SPT with PLP-ser
Descriptor: SERINE PALMITOYLTRANSFERASE, [3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE
Authors:Carter, L.G, Raman, M.C.C, Johnson, K.A, Campopiano, D.J, Naismith, J.H.
Deposit date:2009-01-16
Release date:2009-01-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The External-Aldimine Form of Serine Palmitoyltranserase; Structural, Kinetic and Spectroscopic Analysis of the Wild-Type Enzyme and Hsan1 Mutant Mimics.
J.Biol.Chem., 284, 2009
8U56
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BU of 8u56 by Molmil
The mTORC1 cholesterol sensor LYCHOS (GPR155)
Descriptor: CHOLESTEROL HEMISUCCINATE, Integral membrane protein GPR155, Lauryl Maltose Neopentyl Glycol
Authors:Bayly-Jones, C, Lupton, C.J, Ellisdon, A.M.
Deposit date:2023-09-12
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:The structure of GPR155
To Be Published
8U5C
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BU of 8u5c by Molmil
The mTORC1 cholesterol sensor LYCHOS (GPR155) with cholesterol
Descriptor: CHOLESTEROL HEMISUCCINATE, Integral membrane protein GPR155
Authors:Bayly-Jones, C, Lupton, C.J, Ellisdon, A.M.
Deposit date:2023-09-12
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:The structure of GPR155
To Be Published
8U54
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BU of 8u54 by Molmil
The mTORC1 cholesterol sensor LYCHOS (GPR155)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Integral membrane protein GPR155
Authors:Bayly-Jones, C, Lupton, C.J, Ellisdon, A.M.
Deposit date:2023-09-12
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:The structure of GPR155
To Be Published
8U5V
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BU of 8u5v by Molmil
The mTORC1 cholesterol sensor LYCHOS (GPR155) - auxin bound, closed state
Descriptor: 1H-INDOL-3-YLACETIC ACID, CHOLESTEROL HEMISUCCINATE, Integral membrane protein GPR155
Authors:Bayly-Jones, C, Lupton, C.J, Ellisdon, A.M.
Deposit date:2023-09-13
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:The structure of GPR155
To Be Published
8U5X
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BU of 8u5x by Molmil
The mTORC1 cholesterol sensor LYCHOS (GPR155) - auxin bound, open state
Descriptor: 1H-INDOL-3-YLACETIC ACID, Integral membrane protein GPR155
Authors:Bayly-Jones, C, Lupton, C.J, Ellisdon, A.M.
Deposit date:2023-09-13
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:The structure of GPR155
To Be Published
8U58
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BU of 8u58 by Molmil
The mTORC1 cholesterol sensor LYCHOS (GPR155) with tryptophan
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Integral membrane protein GPR155
Authors:Bayly-Jones, C, Lupton, C.J, Ellisdon, A.M.
Deposit date:2023-09-12
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.45 Å)
Cite:The structure of GPR155
To Be Published
8U5N
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BU of 8u5n by Molmil
The mTORC1 cholesterol sensor LYCHOS (GPR155) - monomer with auxin
Descriptor: 1H-INDOL-3-YLACETIC ACID, Integral membrane protein GPR155
Authors:Bayly-Jones, C, Lupton, C.J, Ellisdon, A.M.
Deposit date:2023-09-12
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The structure of GPR155
To Be Published

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PDB entries from 2024-10-02

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