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3N38
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BU of 3n38 by Molmil
Ribonucleotide Reductase NrdF from Escherichia coli Soaked with Ferrous Ions
Descriptor: FE (II) ION, Ribonucleoside-diphosphate reductase 2 subunit beta
Authors:Boal, A.K, Cotruvo Jr, J.A, Stubbe, J, Rosenzweig, A.C.
Deposit date:2010-05-19
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for activation of class Ib ribonucleotide reductase.
Science, 329, 2010
2AV8
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BU of 2av8 by Molmil
Y122F MUTANT OF RIBONUCLEOTIDE REDUCTASE FROM ESCHERICHIA COLI
Descriptor: FE (II) ION, MU-OXO-DIIRON, RIBONUCLEOTIDE REDUCTASE R2
Authors:Han, S, Arvai, A, Tainer, J.A.
Deposit date:1997-09-30
Release date:1998-10-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Characterization of Y122F R2 of Escherichia coli ribonucleotide reductase by time-resolved physical biochemical methods and X-ray crystallography.
Biochemistry, 37, 1998
1JQC
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BU of 1jqc by Molmil
Mn substituted Ribonucleotide reductase R2 from E. Coli oxidized by hydrogen peroxide and hydroxylamine
Descriptor: MANGANESE (II) ION, MERCURY (II) ION, Protein R2 of ribonucleotide reductase
Authors:Hogbom, M, Andersson, M.E, Nordlund, P.
Deposit date:2001-08-06
Release date:2001-08-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Crystal structures of oxidized dinuclear manganese centres in Mn-substituted class I ribonucleotide reductase from Escherichia coli: carboxylate shifts with implications for O2 activation and radical generation.
J.Biol.Inorg.Chem., 6, 2001
1KGO
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BU of 1kgo by Molmil
R2F from Corynebacterium Ammoniagenes in its reduced, Fe containing, form
Descriptor: FE (II) ION, Ribonucleotide reductase protein R2F
Authors:Hogbom, M, Huque, Y, Sjoberg, B.M, Nordlund, P.
Deposit date:2001-11-28
Release date:2001-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
Biochemistry, 41, 2002
1KGN
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BU of 1kgn by Molmil
R2F from Corynebacterium Ammoniagenes in its oxidised, Fe containing, form
Descriptor: FE (III) ION, Ribonucleotide reductase protein R2F
Authors:Hogbom, M, Huque, Y, Sjoberg, B.M, Nordlund, P.
Deposit date:2001-11-28
Release date:2001-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
Biochemistry, 41, 2002
1JPR
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BU of 1jpr by Molmil
Mn substituted Ribonucleotide reductase R2 from E. coli oxidized by nitric oxide
Descriptor: MANGANESE (II) ION, MERCURY (II) ION, Protein R2 of Ribonucleotide reductase
Authors:Hogbom, M, Andersson, M.E, Nordlund, P.
Deposit date:2001-08-03
Release date:2001-08-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structures of oxidized dinuclear manganese centres in Mn-substituted class I ribonucleotide reductase from Escherichia coli: carboxylate shifts with implications for O2 activation and radical generation.
J.Biol.Inorg.Chem., 6, 2001
1JK0
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BU of 1jk0 by Molmil
Ribonucleotide reductase Y2Y4 heterodimer
Descriptor: ZINC ION, ribonucleoside-diphosphate reductase small chain 1, ribonucleoside-diphosphate reductase small chain 2
Authors:Voegtli, W.C, Perlstein, D.L, Ge, J, Stubbe, J, Rosenzweig, A.C.
Deposit date:2001-07-10
Release date:2001-09-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the yeast ribonucleotide reductase Y2Y4 heterodimer.
Proc.Natl.Acad.Sci.USA, 98, 2001
1MRR
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BU of 1mrr by Molmil
SUBSTITUTION OF MANGANESE FOR IRON IN RIBONUCLEOTIDE REDUCTASE FROM ESCHERICHIA COLI. SPECTROSCOPIC AND CRYSTALLOGRAPHIC CHARACTERIZATION
Descriptor: MANGANESE (II) ION, MERCURY (II) ION, RIBONUCLEOTIDE REDUCTASE R1 PROTEIN
Authors:Eklund, H, Nordlund, P.
Deposit date:1992-07-28
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substitution of manganese for iron in ribonucleotide reductase from Escherichia coli. Spectroscopic and crystallographic characterization.
J.Biol.Chem., 267, 1992
1MXR
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BU of 1mxr by Molmil
High resolution structure of Ribonucleotide reductase R2 from E. coli in its oxidised (Met) form
Descriptor: FE (III) ION, GLYCEROL, MERCURY (II) ION, ...
Authors:Andersson, M.A, Hogbom, M, Nordlund, P.
Deposit date:2002-10-03
Release date:2003-03-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Displacement of the tyrosyl radical cofactor in ribonucleotide reductase obtained by single-crystal high-field EPR and 1.4-A x-ray data.
Proc.Natl.Acad.Sci.Usa, 100, 2003
1KGP
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BU of 1kgp by Molmil
R2F from Corynebacterium Ammoniagenes in its Mn substituted form
Descriptor: MANGANESE (II) ION, Ribonucleotide reductase protein R2F
Authors:Hogbom, M, Huque, Y, Sjoberg, B.M, Nordlund, P.
Deposit date:2001-11-28
Release date:2001-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
Biochemistry, 41, 2002
5CI3
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BU of 5ci3 by Molmil
Ribonucleotide reductase Y122 2,3,5-F3Y variant
Descriptor: MU-OXO-DIIRON, Ribonucleoside-diphosphate reductase 1 subunit beta, SULFATE ION
Authors:Funk, M.A, Drennan, C.L.
Deposit date:2015-07-10
Release date:2016-07-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Biophysical Characterization of Fluorotyrosine Probes Site-Specifically Incorporated into Enzymes: E. coli Ribonucleotide Reductase As an Example.
J.Am.Chem.Soc., 138, 2016
5CI2
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BU of 5ci2 by Molmil
Ribonucleotide reductase Y122 2,3,6-F3Y variant
Descriptor: MU-OXO-DIIRON, Ribonucleoside-diphosphate reductase 1 subunit beta, SULFATE ION
Authors:Funk, M.A, Drennan, C.L.
Deposit date:2015-07-10
Release date:2016-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Biophysical Characterization of Fluorotyrosine Probes Site-Specifically Incorporated into Enzymes: E. coli Ribonucleotide Reductase As an Example.
J.Am.Chem.Soc., 138, 2016
7MMT
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BU of 7mmt by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit from Aerococcus urinae with Cu(I) bound (Cu chloride soak)
Descriptor: CHLORIDE ION, COPPER (I) ION, GLYCEROL, ...
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Ribonucleotide Reductase
To be published
7MMV
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BU of 7mmv by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit from Aerococcus urinae with Cu(I) bound (Cu sulfate soak)
Descriptor: CHLORIDE ION, COPPER (I) ION, GLYCEROL, ...
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Ribonucleotide Reductas
To be published
7MMW
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BU of 7mmw by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit from Aerococcus urinae (in alternate conformation)
Descriptor: CALCIUM ION, Ribonucleoside-diphosphate reductase
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Ribonucleotide Reductase
To be published
7MMU
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BU of 7mmu by Molmil
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit from Aerococcus urinae with Cu(I) bound (Cu acetonitrile soak)
Descriptor: CHLORIDE ION, COPPER (I) ION, Ribonucleoside-diphosphate reductase
Authors:Palowitch, G.M, Boal, A.K.
Deposit date:2021-04-30
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Ribonucleotide Reductase
To be published
5DCR
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BU of 5dcr by Molmil
R2-like ligand-binding oxidase with aerobically reconstituted Mn/Fe cofactor (short soak)
Descriptor: FE (III) ION, MANGANESE (III) ION, PALMITIC ACID, ...
Authors:Griese, J.J, Hogbom, M.
Deposit date:2015-08-24
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.108 Å)
Cite:Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.
J.Biol.Chem., 290, 2015
5DCS
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BU of 5dcs by Molmil
R2-like ligand-binding oxidase with aerobically reconstituted Mn/Fe cofactor (long soak)
Descriptor: FE (III) ION, MANGANESE (II) ION, MANGANESE (III) ION, ...
Authors:Griese, J.J, Hogbom, M.
Deposit date:2015-08-24
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.006 Å)
Cite:Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.
J.Biol.Chem., 290, 2015
5DCO
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BU of 5dco by Molmil
R2-like ligand-binding oxidase with aerobically reconstituted diiron cofactor (short soak)
Descriptor: FE (III) ION, PALMITIC ACID, Ribonucleotide reductase small subunit
Authors:Griese, J.J, Hogbom, M.
Deposit date:2015-08-24
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.326 Å)
Cite:Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.
J.Biol.Chem., 290, 2015
6QRZ
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BU of 6qrz by Molmil
Crystal structure of R2-like ligand-binding oxidase from Sulfolobus acidocaldarius solved by 3D micro-crystal electron diffraction
Descriptor: FE (III) ION, MANGANESE (III) ION, Ribonucleoside-diphosphate reductase
Authors:Xu, H, Lebrette, H, Clabbers, M.T.B, Zhao, J, Griese, J.J, Zou, X, Hogbom, M.
Deposit date:2019-02-20
Release date:2019-04-24
Last modified:2024-05-15
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:Solving a new R2lox protein structure by microcrystal electron diffraction.
Sci Adv, 5, 2019
6QO8
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BU of 6qo8 by Molmil
Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis anaerobically soaked with ferrous ions
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (II) ION, Ribonucleoside-diphosphate reductase subunit beta, ...
Authors:Grave, K, Hogbom, M.
Deposit date:2019-02-12
Release date:2019-08-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.31921768 Å)
Cite:Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access.
J.Biol.Inorg.Chem., 24, 2019
6QO9
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BU of 6qo9 by Molmil
Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis soaked with manganese ions
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MANGANESE (II) ION, Ribonucleoside-diphosphate reductase subunit beta, ...
Authors:Grave, K, Hogbom, M.
Deposit date:2019-02-12
Release date:2019-08-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.299 Å)
Cite:Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access.
J.Biol.Inorg.Chem., 24, 2019
6QO7
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BU of 6qo7 by Molmil
Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis aerobically soaked with ferrous ions (photo-reduced)
Descriptor: CHLORIDE ION, FE (II) ION, Ribonucleoside-diphosphate reductase subunit beta
Authors:Grave, K, Hogbom, M.
Deposit date:2019-02-12
Release date:2019-08-21
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.628 Å)
Cite:Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access.
J.Biol.Inorg.Chem., 24, 2019
6SF5
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BU of 6sf5 by Molmil
Mn-containing form of the ribonucleotide reductase NrdB protein from Leeuwenhoekiella blandensis
Descriptor: MANGANESE (II) ION, Ribonucleoside-diphosphate reductase, beta subunit 1
Authors:Hasan, M, Rozman Grinberg, I, Sjoberg, B.M, Logan, D.T.
Deposit date:2019-08-01
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Class Id ribonucleotide reductase utilizes a Mn2(IV,III) cofactor and undergoes large conformational changes on metal loading.
J.Biol.Inorg.Chem., 24, 2019
6QO5
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BU of 6qo5 by Molmil
Crystal structure of apo (metal-free) ribonucleotide reductase NrdF from Bacillus anthracis
Descriptor: CHLORIDE ION, Ribonucleoside-diphosphate reductase subunit beta, SULFATE ION
Authors:Grave, K, Hogbom, M.
Deposit date:2019-02-12
Release date:2019-08-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.511 Å)
Cite:Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access.
J.Biol.Inorg.Chem., 24, 2019

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