PDB: 72960 resultsInfo pagesStatus searchChemie searchBIRD

---

1WJX	Crystal sturucture of TT0801 from Thermus thermophilus Descriptor: POTASSIUM ION, SsrA-binding protein Authors: Bessho, Y, Shibata, R, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-29 Release date: 2004-11-29 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA. Proc.Natl.Acad.Sci.Usa, 104, 2007
4BL1	Crystal structure of unphosphorylated Maternal Embryonic Leucine zipper Kinase (MELK) in complex with AMP-PNP Descriptor: MATERNAL EMBRYONIC LEUCINE ZIPPER KINASE, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Authors: Canevari, G, Re-Depaolini, S, Cucchi, U, Forte, B, Carpinelli, P, Bertrand, J.A. Deposit date: 2013-04-30 Release date: 2013-05-08 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal Structure of Unphosphorylated Maternal Embryonic Leucine Zipper Kinase To be Published
7C07	Crystal structure of yeast U2AF1 complex bound to 5'-AAGGU RNA. Descriptor: RNA (5'-R(*U*AP*AP*GP*GP*U)-3'), Splicing factor U2AF 23 kDa subunit, Splicing factor U2AF 59 kDa subunit, ... Authors: Yoshida, H, Park, S.Y, Urano, T, Obayashi, E. Deposit date: 2020-04-30 Release date: 2020-09-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1. Nat Commun, 11, 2020
4RU2	Crystal structure of a RNA-binding protein 39 (RBM39) in complex with fragment of splicing factor (U2AF) from Mus musculus at 2.20 A resolution Descriptor: RNA-binding protein 39 (RBM39), Splicing factor U2AF 65 kDa subunit Authors: Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL) Deposit date: 2014-11-17 Release date: 2015-02-04 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of a RNA-binding protein 39 (RBM39) in complex with fragment of splicing factor (U2AF) from Mus musculus at 2.20 A resolution To be published
6YLE	Rix1-Rea1 pre-60S particle - Rix1-subcomplex, body 3 (rigid body refinement) Descriptor: Pre-rRNA-processing protein IPI1, Pre-rRNA-processing protein IPI3, Pre-rRNA-processing protein RIX1 Authors: Kater, L, Beckmann, R. Deposit date: 2020-04-07 Release date: 2020-07-29 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis. Mol.Cell, 79, 2020
6SCX	Crystal structure of the catalytic domain of human NUDT12 in complex with 7-methyl-guanosine-5'-triphosphate Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, CADMIUM ION, Peroxisomal NADH pyrophosphatase NUDT12 Authors: McCarthy, A.A, Chen, K.M, Wu, H, Li, L, Homolka, D, Gos, P, Fleury-Olela, F, Pillai, R.S. Deposit date: 2019-07-25 Release date: 2020-01-08 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.92 Å) Cite: Decapping Enzyme NUDT12 Partners with BLMH for Cytoplasmic Surveillance of NAD-Capped RNAs. Cell Rep, 29, 2019
5A48	Crystal structure of the LOTUS domain (aa 139-240) of Drosophila Oskar in P65 Descriptor: MATERNAL EFFECT PROTEIN OSKAR Authors: Jeske, M, Glatt, S, Ephrussi, A, Mueller, C.W. Deposit date: 2015-06-05 Release date: 2015-07-22 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.35 Å) Cite: The Crystal Structure of the Drosophila Germline Inducer Oskar Identifies Two Domains with Distinct Vasa Helicase-and RNA-Binding Activities. Cell Rep., 12, 2015
5A49	Crystal structure of the LOTUS domain (aa 139-222) of Drosophila Oskar in C222 Descriptor: MATERNAL EFFECT PROTEIN OSKAR Authors: Jeske, M, Glatt, S, Ephrussi, A, Mueller, C.W. Deposit date: 2015-06-05 Release date: 2015-07-22 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.098 Å) Cite: The Crystal Structure of the Drosophila Germline Inducer Oskar Identifies Two Domains with Distinct Vasa Helicase-and RNA-Binding Activities. Cell Rep., 12, 2015
3LRK	Structure of alfa-galactosidase (MEL1) from Saccharomyces cerevisiae Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Fernandez-Leiro, R, Pereira-Rodriguez, A, Cerdan, M.E, Becerra, M, Sanz-Aparicio, J. Deposit date: 2010-02-11 Release date: 2010-06-30 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural analysis of Saccharomyces cerevisiae alpha-galactosidase and its complexes with natural substrates reveals new insights into substrate specificity of GH27 glycosidases. J.Biol.Chem., 285, 2010
3LRM	Structure of alfa-galactosidase from Saccharomyces cerevisiae with raffinose Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Fernandez-Leiro, R, Pereira-Rodriguez, A, Cerdan, M.E, Becerra, M, Sanz-Aparicio, J. Deposit date: 2010-02-11 Release date: 2010-06-30 Last modified: 2021-10-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural analysis of Saccharomyces cerevisiae alpha-galactosidase and its complexes with natural substrates reveals new insights into substrate specificity of GH27 glycosidases. J.Biol.Chem., 285, 2010
5LQT	RNA duplex has central consecutive GA pairs flanked by G-C basepairs Descriptor: CALCIUM ION, MAGNESIUM ION, RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*CP*GP*GP*C)-3'), ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2016-08-17 Release date: 2017-06-21 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Control of box C/D snoRNP assembly by N(6)-methylation of adenine. EMBO Rep., 18, 2017
1I39	RNASE HII FROM ARCHAEOGLOBUS FULGIDUS Descriptor: RIBONUCLEASE HII Authors: Chapados, B.R, Chai, Q, Hosfield, D.J, Qiu, J, Shen, B, Tainer, J.A. Deposit date: 2001-02-13 Release date: 2001-04-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural biochemistry of a type 2 RNase H: RNA primer recognition and removal during DNA replication. J.Mol.Biol., 307, 2001
1I3A	RNASE HII FROM ARCHAEOGLOBUS FULGIDUS WITH COBALT HEXAMMINE CHLORIDE Descriptor: COBALT HEXAMMINE(III), RIBONUCLEASE HII Authors: Chapados, B.R, Chai, Q, Hosfield, D.J, Qiu, J, Shen, B, Tainer, J.A. Deposit date: 2001-02-13 Release date: 2001-04-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural biochemistry of a type 2 RNase H: RNA primer recognition and removal during DNA replication. J.Mol.Biol., 307, 2001
2VMK	Crystal Structure of E. coli RNase E Apoprotein - Catalytic Domain Descriptor: RIBONUCLEASE E, SULFATE ION, ZINC ION Authors: Koslover, D.J, Callaghan, A.J, Marcaida, M.J, Martick, M, Scott, W.G, Luisi, B.F. Deposit date: 2008-01-28 Release date: 2008-07-22 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.3 Å) Cite: The Crystal Structure of the Escherichia Coli Rnase E Apoprotein and a Mechanism for RNA Degradation. Structure, 16, 2008
6I0T	Crystal structure of DmTailor in complex with GpU Descriptor: RNA (5'-R(*GP*U)-3'), Terminal uridylyltransferase Tailor Authors: Kroupova, A, Ivascu, A, Jinek, M. Deposit date: 2018-10-26 Release date: 2018-12-05 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor. Nucleic Acids Res., 47, 2019
4OZS	RNA binding protein Descriptor: Alpha solenoid protein Authors: Gully, B.S, Bond, C.S. Deposit date: 2014-02-19 Release date: 2015-04-22 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.17 Å) Cite: The design and structural characterization of a synthetic pentatricopeptide repeat protein. Acta Crystallogr.,Sect.D, 71, 2015
7C06	Crystal structure of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU. Descriptor: RNA (5'-R(*U*UP*AP*GP*GP*U)-3'), Splicing factor U2AF 23 kDa subunit, Splicing factor U2AF 59 kDa subunit, ... Authors: Yoshida, H, Park, S.Y, Urano, T, Obayashi, E. Deposit date: 2020-04-30 Release date: 2020-09-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.02 Å) Cite: Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1. Nat Commun, 11, 2020
7C08	Crystal structure of S34Y mutant of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU. Descriptor: RNA (5'-R(*U*UP*AP*GP*GP*U)-3'), Splicing factor U2AF 23 kDa subunit, Splicing factor U2AF 59 kDa subunit, ... Authors: Yoshida, H, Park, S.Y, Urano, T, Obayashi, E. Deposit date: 2020-04-30 Release date: 2020-09-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1. Nat Commun, 11, 2020
6VSX	X-ray crystal structure of the C-terminal domain of Bacillus subtilis RNA polymerase binding helicase HelD Descriptor: DNA helicase, PHOSPHATE ION Authors: Murakami, K.S, Chon, U. Deposit date: 2020-02-12 Release date: 2020-06-10 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase. Nat Commun, 11, 2020
6SQN	Structure of the U1A variant A1-98 Y31H/Q36R/F56W triple mutant co-crystallized with RNA Descriptor: RNA hairpin, U1 small nuclear ribonucleoprotein A Authors: Rosenbach, H, Span, I. Deposit date: 2019-09-04 Release date: 2020-05-13 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Expanding crystallization tools for nucleic acid complexes using U1A protein variants. J.Struct.Biol., 210, 2020
7CT8	Crystal structure of apo CmoB from Vibrio Vulnificus Descriptor: tRNA U34 carboxymethyltransferase Authors: Kim, J, Jeong, S. Deposit date: 2020-08-18 Release date: 2021-03-03 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural snapshots of CmoB in various states during wobble uridine modification of tRNA. Biochem.Biophys.Res.Commun., 534, 2021
2CD1	Refinement of P4 stemloop structure using residual dipolar coupling data Descriptor: 5'-R(*GP*GP*AP*AP*GP*UP*CP*CP*GP*GP*UP*CP*UP *UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3' Authors: Schmitz, M. Deposit date: 2006-01-19 Release date: 2007-05-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite:
4KLB	Crystal Structure of Cruzain in complex with the non-covalent inhibitor Nequimed176 Descriptor: 2-{[(1H-1,2,4-triazol-5-ylsulfanyl)acetyl]amino}thiophene-3-carboxamide, Cruzipain Authors: Fernandes, W.B, Montanari, C.A, Mckerrow, J.H. Deposit date: 2013-05-07 Release date: 2013-09-18 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.62 Å) Cite: Non-peptidic Cruzain Inhibitors with Trypanocidal Activity Discovered by Virtual Screening and In Vitro Assay. Plos Negl Trop Dis, 7, 2013
8PTZ	Cryo-EM structure of human Elp123 in complex with tRNA, S-ethyl-CoA, 5'-deoxyadenosine and methionine Descriptor: 5'-DEOXYADENOSINE, Elongator complex protein 1, Elongator complex protein 2, ... Authors: Abbassi, N, Jaciuk, M, Lin, T.-Y, Glatt, S. Deposit date: 2023-07-16 Release date: 2024-04-17 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Cryo-EM structures of the human Elongator complex at work. Nat Commun, 15, 2024
8PU0	Cryo-EM structure of human Elp123 in complex with tRNA, desulpho-CoA, 5'-deoxyadenosine and methionine Descriptor: 5'-DEOXYADENOSINE, DESULFO-COENZYME A, Elongator complex protein 1, ... Authors: Abbassi, N, Jaciuk, M, Lin, T.-Y, Glatt, S. Deposit date: 2023-07-16 Release date: 2024-04-17 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (4.25 Å) Cite: Cryo-EM structures of the human Elongator complex at work. Nat Commun, 15, 2024

<363364365366367368369370371372373374375376377378>