PDB: 9786 resultsInfo pagesStatus searchChemie searchBIRD

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7EDF	Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Wu, H.C, Hsu, S.T.D. Deposit date: 2021-03-16 Release date: 2021-09-01 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Effect of SARS-CoV-2 B.1.1.7 mutations on spike protein structure and function. Nat.Struct.Mol.Biol., 28, 2021
7EDH	Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 3 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Wu, H.C, Hsu, S.T.D. Deposit date: 2021-03-16 Release date: 2021-09-01 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Effect of SARS-CoV-2 B.1.1.7 mutations on spike protein structure and function. Nat.Struct.Mol.Biol., 28, 2021
7RXD	CryoEM structure of RBD domain of COVID-19 in complex with Legobody Descriptor: Fab_8D3_2 heavy chain, Fab_8D3_2 light chain, Maltodextrin-binding protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G, ... Authors: Wu, X.D, Rapoport, T.A. Deposit date: 2021-08-22 Release date: 2021-10-06 Last modified: 2021-10-20 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies). Proc.Natl.Acad.Sci.USA, 118, 2021
7RXC	CryoEM structure of KDELR with Legobody Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, ER lumen protein-retaining receptor 2, Fab_8D3_2 heavy chain, ... Authors: Wu, X.D, Rapoport, T.A. Deposit date: 2021-08-22 Release date: 2021-10-06 Last modified: 2021-10-20 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies). Proc.Natl.Acad.Sci.USA, 118, 2021
7RZU	Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with A942S mutation Descriptor: SARS-CoV-2 HR1 A942S linked to a scaffold,Spike protein S2', Spike protein S2' Authors: Yang, K, Brunger, A.T. Deposit date: 2021-08-27 Release date: 2022-04-06 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle. Proc.Natl.Acad.Sci.USA, 119, 2022
7RZS	Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with L938F mutation Descriptor: SARS-CoV-2 HR1 L938F linked to a scaffold,Spike protein S2', Spike protein S2' Authors: Yang, K, Brunger, A.T. Deposit date: 2021-08-27 Release date: 2022-04-06 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.52 Å) Cite: Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle. Proc.Natl.Acad.Sci.USA, 119, 2022
7RZR	Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with D936Y mutation Descriptor: SARS-CoV-2 HR1 D936Y linked to a scaffold,Spike protein S2', Spike protein S2' Authors: Yang, K, Brunger, A.T. Deposit date: 2021-08-27 Release date: 2022-04-06 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.27 Å) Cite: Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle. Proc.Natl.Acad.Sci.USA, 119, 2022
7RZT	Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with S940F mutation Descriptor: SARS-CoV-2 HR1 S940F linked to a scaffold,Spike protein S2', Spike protein S2' Authors: Yang, K, Brunger, A.T. Deposit date: 2021-08-27 Release date: 2022-04-06 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.35 Å) Cite: Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle. Proc.Natl.Acad.Sci.USA, 119, 2022
7RZV	Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with V1176F mutation Descriptor: SARS-CoV-2 HR1 linked to a scaffold,Spike protein S2', Spike protein S2' Authors: Yang, K, Brunger, A.T. Deposit date: 2021-08-27 Release date: 2022-04-06 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.11 Å) Cite: Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle. Proc.Natl.Acad.Sci.USA, 119, 2022
7RZQ	Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex Descriptor: SARS-CoV-2 HR1 linked to a scaffold,Spike protein S2', Spike protein S2' Authors: Yang, K, Brunger, A.T. Deposit date: 2021-08-27 Release date: 2022-04-06 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.09 Å) Cite: Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle. Proc.Natl.Acad.Sci.USA, 119, 2022
7SJN	HtrA1:Fab15H6.v4 complex Descriptor: Fab15H6.v4 Heavy Chain, Fab15H6.v4 Light Chain, Serine protease HTRA1 Authors: Gerhardy, S, Green, E, Estevez, A, Arthur, C.P, Ultsch, M, Rohou, A, Kirchhofer, D. Deposit date: 2021-10-18 Release date: 2022-09-07 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Allosteric inhibition of HTRA1 activity by a conformational lock mechanism to treat age-related macular degeneration. Nat Commun, 13, 2022
7SJO	HtrA1S328A:Fab15H6.v4 complex Descriptor: Fab15H6.v4 Heavy Chain, Fab15H6.v4 Light Chain, Serine protease HTRA1 Authors: Gerhardy, S, Green, E, Estevez, A, Arthur, C.P, Ultsch, M, Rohou, A, Kirchhofer, D. Deposit date: 2021-10-18 Release date: 2022-09-07 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Allosteric inhibition of HTRA1 activity by a conformational lock mechanism to treat age-related macular degeneration. Nat Commun, 13, 2022
7SBZ	JAR5 Fab bound to fHbp v1.1 crystallized in space group I422 Descriptor: CADMIUM ION, Factor H-binding protein, JAR5 Heavy Chain, ... Authors: Chesterman, C, Malito, E, Bottomley, M.J. Deposit date: 2021-09-26 Release date: 2022-10-05 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Active Learning for Rapid Design: An iterative AI approach for accelerated vaccine design that combines active machine learning and high-throughput experimental evaluation To Be Published
7SAL	Crystal Structure of LaM6 Nanobody bound to mCherry Descriptor: GLYCEROL, LaM6, mCherry Authors: Cong, A.T.Q, Schellenberg, M.J. Deposit date: 2021-09-22 Release date: 2022-09-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.93 Å) Cite: High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices. Protein Sci., 31, 2022
7SAI	Crystal Structure of Lag30 Nanobody bound to eGFP Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, Green fluorescent protein, ... Authors: Cong, A.T.Q, Schellenberg, M.J. Deposit date: 2021-09-22 Release date: 2022-09-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.23 Å) Cite: High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices. Protein Sci., 31, 2022
7SAH	Crystal Structure of LaG16 Nanobody bound to eGFP Descriptor: Green fluorescent protein, LaG16 Authors: Cong, A.T.Q, Schellenberg, M.J. Deposit date: 2021-09-22 Release date: 2022-09-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.6 Å) Cite: High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices. Protein Sci., 31, 2022
7SAK	Crystal Structure of LaM4 Nanobody bound to mCherry Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, LaM4, ... Authors: Cong, A.T.Q, Schellenberg, M.J. Deposit date: 2021-09-22 Release date: 2022-09-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.15 Å) Cite: High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices. Protein Sci., 31, 2022
7SAJ	Crystal Structure of LaM2 Nanobody bound to mCherry Descriptor: mCherry, nanobody LaM2 Authors: Cong, A.T.Q, Schellenberg, M.J. Deposit date: 2021-09-22 Release date: 2022-09-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.37 Å) Cite: High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices. Protein Sci., 31, 2022
7T62	GPC2 HEP CT3 complex Descriptor: CT3, Glypican-2 Authors: Zhu, J, Cachau, R, De Val Alda, N, Li, N, Ho, M. Deposit date: 2021-12-13 Release date: 2021-12-22 Method: ELECTRON MICROSCOPY (21 Å) Cite: CAR T cells targeting tumor-associated exons of glypican 2 regress neuroblastoma in mice. Cell Rep Med, 2, 2021
7T4E	Prepore structure of pore-forming toxin Epx1 Descriptor: Epx1 Authors: Xiong, X.Z, Yang, P, Dong, M, Abraham, J. Deposit date: 2021-12-09 Release date: 2022-03-16 Last modified: 2024-02-28 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: Emerging enterococcus pore-forming toxins with MHC/HLA-I as receptors. Cell, 185, 2022
7T4D	Pore structure of pore-forming toxin Epx4 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Epx4 Authors: Xiong, X.Z, Dong, M, Yang, P, Abraham, J. Deposit date: 2021-12-09 Release date: 2022-03-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3 Å) Cite: Emerging enterococcus pore-forming toxins with MHC/HLA-I as receptors. Cell, 185, 2022
7T1W	Crystal structure of human Fab A194-01 in complex with its synthetic tetrasaccharide Ara4 epitope (BSI110886) Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Fab A194-01 heavy chain, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2021-12-02 Release date: 2022-12-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of human Fab A194-01 in complex with its synthetic tetrasaccharide Ara4 epitope (BSI110886) to be published
7T25	OspA-Fab 319-44 complex structure Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 319-44 Fab heavy chain, ... Authors: Rudolph, M.J. Deposit date: 2021-12-03 Release date: 2022-12-14 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural analysis of OspA-31944 complex To Be Published
7T1X	Crystal structure of human Fab A194-01 in complex with its synthetic heptasaccharide Ara6-Man epitope (BSI110888) Descriptor: 1,2-ETHANEDIOL, Fab A194-01 heavy chain, Fab A194-01 light chain, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2021-12-02 Release date: 2022-12-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of human Fab A194-01 in complex with its synthetic heptasaccharide Ara6-Man epitope (BSI110888) to be published
7TOU	Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; consensus state D1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Gobeil, S, Acharya, P. Deposit date: 2022-01-24 Release date: 2022-02-09 Last modified: 2023-04-12 Method: ELECTRON MICROSCOPY (3.24 Å) Cite: Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

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