Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MNB
DownloadVisualize
BU of 5mnb by Molmil
Cationic trypsin in complex with 2-aminopyridine (deuterated sample at 295 K)
Descriptor: 2-AMINOPYRIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.939 Å)
Cite:Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin.
Angew. Chem. Int. Ed. Engl., 56, 2017
3M4H
DownloadVisualize
BU of 3m4h by Molmil
Human Aldose Reductase mutant T113V complexed with IDD388
Descriptor: (2-{[(4-BROMO-2-FLUOROBENZYL)AMINO]CARBONYL}-5-CHLOROPHENOXY)ACETIC ACID, Aldose reductase, BROMIDE ION, ...
Authors:Koch, C, Heine, A, Klebe, G.
Deposit date:2010-03-11
Release date:2010-12-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Tracing the detail: how mutations affect binding modes and thermodynamic signatures of closely related aldose reductase inhibitors
J.Mol.Biol., 406, 2011
2UU8
DownloadVisualize
BU of 2uu8 by Molmil
X-ray structure of Ni, Ca concanavalin A at Ultra-high resolution (0. 94A)
Descriptor: CALCIUM ION, CONCANAVALIN, NICKEL (II) ION
Authors:Ahmed, H.U, Blakeley, M.P, Cianci, M, Cruickshank, D.W.J, Hubbard, J.A, Helliwell, J.R.
Deposit date:2007-03-01
Release date:2007-07-31
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:The Determination of Protonation States in Proteins.
Acta Crystallogr.,Sect.D, 63, 2007
4QB3
DownloadVisualize
BU of 4qb3 by Molmil
Crystal structure of the first bromodomain of human BRD4 in complex with Olinone
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, N-[4-(1-oxo-1,2,3,4-tetrahydro-5H-pyrido[4,3-b]indol-5-yl)butyl]acetamide
Authors:Plotnikov, A.N, Joshua, J, Zhou, M.-M.
Deposit date:2014-05-06
Release date:2015-04-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Selective chemical modulation of gene transcription favors oligodendrocyte lineage progression.
Chem.Biol., 21, 2014
2VHK
DownloadVisualize
BU of 2vhk by Molmil
Atomic resolution (0.94 A) structure of purified thaumatin I grown in sodium L-tartrate at 22C
Descriptor: GLYCEROL, L(+)-TARTARIC ACID, THAUMATIN-I
Authors:Jakoncic, J, Asherie, N, Ginsberg, C.
Deposit date:2007-11-21
Release date:2009-02-10
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Tartrate Chirality Determines Thaumatin Crystal Habit
Cryst.Growth Des., 9, 2009
6Q6T
DownloadVisualize
BU of 6q6t by Molmil
Crystal structure (orthorombic form) of C36S mutant of thioredoxin h1 from Chlamydomonas reinhardtii
Descriptor: DI(HYDROXYETHYL)ETHER, Thioredoxin H-type
Authors:Fermani, S, Zaffagnini, M, Lemaire, S.D.
Deposit date:2018-12-11
Release date:2019-01-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Structural and Biochemical Insights into the Reactivity of Thioredoxin h1 fromChlamydomonas reinhardtii.
Antioxidants (Basel), 8, 2019
8CNP
DownloadVisualize
BU of 8cnp by Molmil
Human Aldose Reductase Mutant L300G in Complex with a Ligand with an IDD Structure (3-({[2-(carboxymethoxy)-4-fluorobenzoyl]amino}methyl)benzoic acid)
Descriptor: 3-({[2-(carboxymethoxy)-4-fluorobenzoyl]amino}methyl)benzoic acid, Aldo-keto reductase family 1 member B1, CITRIC ACID, ...
Authors:Klee, L.-S, Heine, A, Klebe, G.
Deposit date:2023-02-24
Release date:2024-03-06
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Human Aldose Reductase Mutant L300G in Complex with a Ligand with an IDD Structure (3-({[2-(carboxymethoxy)-4-fluorobenzoyl]amino}methyl)benzoic acid)
To Be Published
1ZFF
DownloadVisualize
BU of 1zff by Molmil
TTC Duplex B-DNA
Descriptor: 5'-D(*CP*CP*GP*AP*AP*TP*TP*CP*GP*G)-3'
Authors:Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S.
Deposit date:2005-04-20
Release date:2005-05-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:How sequence defines structure: a crystallographic map of DNA structure and conformation.
Proc.Natl.Acad.Sci.Usa, 102, 2005
2V8B
DownloadVisualize
BU of 2v8b by Molmil
SAD Structure solution of Proteinase K grown in selenate solution
Descriptor: CALCIUM ION, PROTEINASE K, SELENATE ION
Authors:Jakoncic, J, Stojanoff, V.
Deposit date:2007-08-06
Release date:2008-08-26
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Selenate Substitution: Application in Protein Crystallography
To be Published
7FYG
DownloadVisualize
BU of 7fyg by Molmil
Crystal Structure of human FABP4 in complex with 6-benzyl-2H-1,2,4-triazine-3,5-dithione
Descriptor: 1,2-ETHANEDIOL, 6-benzyl-1,2,4-triazine-3,5(2H,4H)-dithione, Fatty acid-binding protein, ...
Authors:Ehler, A, Benz, J, Obst, U, Koch, W, Rudolph, M.G.
Deposit date:2023-04-27
Release date:2023-06-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Crystal Structure of a human FABP4 complex
To be published
6JGH
DownloadVisualize
BU of 6jgh by Molmil
Crystal structure of the F99S/M153T/V163A/T203I variant of GFP at 0.94 A
Descriptor: CHLORIDE ION, Green fluorescent protein
Authors:Eki, H, Tai, Y, Takaba, K, Hanazono, Y, Miki, K, Takeda, K.
Deposit date:2019-02-14
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Subatomic resolution X-ray structures of green fluorescent protein.
Iucrj, 6, 2019
5R3L
DownloadVisualize
BU of 5r3l by Molmil
PanDDA analysis group deposition -- Auto-refined data of Endothiapepsin for ground state model 45, DMSO-Free
Descriptor: Endothiapepsin
Authors:Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G, Weiss, M.S.
Deposit date:2020-02-13
Release date:2020-06-03
Last modified:2020-07-08
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening.
Structure, 28, 2020
1GVU
DownloadVisualize
BU of 1gvu by Molmil
Endothiapepsin complex with H189
Descriptor: ENDOTHIAPEPSIN, INHIBITOR, H189, ...
Authors:Coates, L, Erskine, P.T, Crump, M.P, Wood, S.P, Cooper, J.B.
Deposit date:2002-02-27
Release date:2002-07-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Five Atomic Resolution Structures of Endothiapepsin Inhibitor Complexes: Implications for the Aspartic Proteinase Mechanism
J.Mol.Biol., 318, 2002
7OL5
DownloadVisualize
BU of 7ol5 by Molmil
Crystal structure of Lysozyme in complex with Hepes
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ISOPROPYL ALCOHOL, Lysozyme
Authors:Camara-Artigas, A, Salinas-Garcia, M.C, Plaza-Garrido, M.
Deposit date:2021-05-19
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Crystal structure of Lysozyme in complex with Hepes
To be published
5R1V
DownloadVisualize
BU of 5r1v by Molmil
PanDDA analysis group deposition -- Endothiapepsin in complex with fragment F2X-Entry C04, DMSO-free
Descriptor: 2-hydrazinyl-4-methoxypyrimidine, Endothiapepsin
Authors:Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G, Weiss, M.S.
Deposit date:2020-02-13
Release date:2020-06-03
Last modified:2020-07-08
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening.
Structure, 28, 2020
4BY8
DownloadVisualize
BU of 4by8 by Molmil
Microheterogeneous Paracelsin-X from Trichoderma reesei
Descriptor: METHANOL, PARACELSIN-X
Authors:Gessmann, R, Petratos, K.
Deposit date:2013-07-18
Release date:2013-08-21
Last modified:2019-04-17
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Microheterogeneous Paracelsin-X from Trichoderma Reesei
To be Published
7A31
DownloadVisualize
BU of 7a31 by Molmil
Crystal structure of the c-Src SH3 domain mutant S94A-T98D-V111L-N113S-T114S at pH 4.5
Descriptor: Proto-oncogene tyrosine-protein kinase Src
Authors:Camara-Artigas, A, Plaza-Garrido, M, Salinas-Garcia, M.C.
Deposit date:2020-08-18
Release date:2021-08-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Crystal structure of the c-Src SH3 domain mutant S94A-T98D-V111L-N113S-T114S at pH 4.5
To be published
5SAN
DownloadVisualize
BU of 5san by Molmil
Endothiapepsin in complex with compound FU5-4
Descriptor: (2Z)-2-(3-amino-1H-isoindol-1-ylidene)hydrazine-1-carboximidamide, Endothiapepsin, GLYCEROL
Authors:Wollenhaupt, J, Metz, A, Messini, N, Barthel, T, Klebe, G, Weiss, M.S.
Deposit date:2021-05-28
Release date:2021-09-01
Last modified:2021-09-29
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Frag4Lead: growing crystallographic fragment hits by catalog using fragment-guided template docking.
Acta Crystallogr D Struct Biol, 77, 2021
7A2O
DownloadVisualize
BU of 7a2o by Molmil
Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 4.5
Descriptor: TRIETHYLENE GLYCOL, Tyrosine-protein kinase Fyn
Authors:Camara-Artigas, A, Plaza-Garrido, M, Salinas-Garcia, M.C.
Deposit date:2020-08-18
Release date:2021-08-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 4.5
To be published
7A2Q
DownloadVisualize
BU of 7a2q by Molmil
Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 3.0 with PEG
Descriptor: SULFATE ION, TETRAETHYLENE GLYCOL, Tyrosine-protein kinase Fyn
Authors:Camara-Artigas, A, Plaza-Garrido, M, Salinas-Garcia, M.C.
Deposit date:2020-08-18
Release date:2021-08-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 3.0 with PEG
To be published
1GVK
DownloadVisualize
BU of 1gvk by Molmil
Porcine pancreatic elastase acyl enzyme at 0.95 A resolution
Descriptor: CALCIUM ION, ELASTASE 1, PEPTIDE INHIBITOR, ...
Authors:Katona, G, Wilmouth, R.C, Wright, P.A, Berglund, G.I, Hajdu, J, Neutze, R, Schofield, C.J.
Deposit date:2002-02-14
Release date:2002-07-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:X-Ray Structure of a Serine Protease Acyl-Enzyme Complex at 0.95-A Resolution.
J.Biol.Chem., 277, 2002
2PPP
DownloadVisualize
BU of 2ppp by Molmil
Crystal structure of E60Q mutant of FKBP12
Descriptor: FK506-binding protein 1A
Authors:Szep, S, Park, S, VanDuyne, G.D, Saven, J.F.
Deposit date:2007-04-30
Release date:2008-09-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Structural coupling between FKBP12 and buried water.
Proteins, 74, 2009
8QXQ
DownloadVisualize
BU of 8qxq by Molmil
PsiM in complex with SAH and psilocybin
Descriptor: CHLORIDE ION, Psilocybin synthase, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Werten, S, Hudspeth, J, Rupp, B.
Deposit date:2023-10-24
Release date:2024-04-03
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Methyl transfer in psilocybin biosynthesis.
Nat Commun, 15, 2024
2ZQ7
DownloadVisualize
BU of 2zq7 by Molmil
Apo structure of Class A beta-lactamase Toho-1 E166A/R274N/R276N triple mutant
Descriptor: Beta-lactamase Toho-1, SULFATE ION
Authors:Shimamura, T, Nitanai, Y, Uchiyama, T, Ago, H, Matsuzawa, H, Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Improvement of the Crystal Quality by the Surface Mutations on a Beta-Lactamase Toho-1
To be Published
7APS
DownloadVisualize
BU of 7aps by Molmil
The Fk1 domain of FKBP51 in complex with (2S)-2-((1S,5R,6R)-10-((3,5-dichlorophenyl)sulfonyl)-2-oxo-5-vinyl-3,10-diazabicyclo[4.3.1]decan-3-yl)propanoic acid
Descriptor: (2~{S})-2-[(1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-ethyl-2-oxidanylidene-3,10-diazabicyclo[4.3.1]decan-3-yl]propanoic acid, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Kolos, M.J, Pomplun, S, Riess, B, Purder, P, Voll, M.A, Merz, S, Bracher, A, Meyners, C, Krewald, V, Hausch, F.
Deposit date:2020-10-19
Release date:2021-11-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Picomolar FKBP inhibitors enabled by a single water-displacing methyl group in bicyclic [4.3.1] aza-amides.
Chem Sci, 12, 2021

221371

PDB entries from 2024-06-19

PDB statisticsPDBj update infoContact PDBjnumon