PDB: 113 resultsInfo pagesStatus searchChemie searchBIRD

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2IS3	Crystal Structure of Escherichia coli RNase T Descriptor: Ribonuclease T, SULFATE ION Authors: Zuo, Y, Wang, Y, Malhotra, A. Deposit date: 2006-10-16 Release date: 2007-04-24 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Crystal Structure of RNase T, an Exoribonuclease Involved in tRNA Maturation and End Turnover. Structure, 15, 2007
1YTA	Crystal Structure of Oligoribonuclease, the lone essential exoribonuclease in Escherichia coli Descriptor: CITRATE ANION, Oligoribonuclease Authors: Fiedler, T.J, Zuo, Y, Malhotra, A. Deposit date: 2005-02-10 Release date: 2006-02-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure of Oligoribonuclease, the lone essential exoribonuclease in Escherichia coli To be Published
4FZX	Exonuclease X in complex with 3' overhanging duplex DNA Descriptor: DNA (5'-D(P*CP*GP*GP*AP*TP*CP*CP*AP*CP*AP*AP*TP*GP*AP*CP*CP*T)-3'), DNA (5'-D(P*GP*TP*CP*AP*TP*TP*GP*TP*GP*GP*AP*TP*CP*CP*GP*AP*G)-3'), Exodeoxyribonuclease 10, ... Authors: Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. Deposit date: 2012-07-08 Release date: 2013-07-03 Last modified: 2013-10-09 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
7LPZ	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
7LQ0	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
7LPY	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
4FZY	Exonuclease X in complex with 12bp blunt-ended dsDNA Descriptor: DNA (5'-D(*TP*GP*TP*AP*GP*AP*TP*TP*CP*GP*AP*G)-3'), DNA (5'-D(P*CP*TP*CP*GP*AP*AP*TP*CP*TP*AP*CP*A)-3'), Exodeoxyribonuclease 10, ... Authors: Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. Deposit date: 2012-07-08 Release date: 2013-07-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
4FZZ	Exonuclease X in complex with 5' overhanging duplex DNA Descriptor: DNA (5'-D(*GP*TP*CP*AP*TP*TP*GP*TP*GP*GP*AP*TP*CP*CP*GP*AP*G)-3'), Exodeoxyribonuclease 10, SODIUM ION Authors: Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. Deposit date: 2012-07-08 Release date: 2013-07-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
3NH1	Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site Descriptor: 5'-D(*TP*TP*AP*TP*AP*GP*G)-3', MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.107 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NH0	Crystal structure of RNase T in complex with a non-preferred ssDNA (AAC) Descriptor: 5'-D(*TP*TP*AP*CP*AP*AP*C)-3', Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NH2	Crystal structure of RNase T in complex with a stem DNA with a 3' overhang Descriptor: 5'-D(P*TP*TP*AP*CP*AP*AP*C)-3', Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NGZ	Crystal structure of RNase T in complex with a non-preferred ssDNA (GC) with one Mg in the active site Descriptor: 5'-D(P*GP*C)-3', COBALT (II) ION, MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
7N8V	Crystal structure of free ERI2 nuclease Descriptor: ERI1 exoribonuclease 2, SULFATE ION Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2021-06-15 Release date: 2022-07-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of free ERI2 nuclease To Be Published
7N8W	Crystal structure of ERI2 nuclease bound to rAMP Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 2, ... Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2021-06-15 Release date: 2022-07-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal structure of ERI2 nuclease bound to rAMP To Be Published
3NGY	Crystal structure of RNase T (E92G mutant) Descriptor: COBALT (II) ION, Ribonuclease T, his tag sequence Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.204 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9S	Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
7VH4	Crystal structure of oligoribonuclease of Escherichia coli Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ... Authors: Badhwar, P, Taneja, B. Deposit date: 2021-09-20 Release date: 2022-09-28 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Three-dimensional structure of a mycobacterial oligoribonuclease reveals a unique C-terminal tail that stabilizes the homodimer. J.Biol.Chem., 298, 2022
3V9U	Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.298 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3VA3	Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) Descriptor: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.714 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
7VA2	PaOrn Oligoribonuclease D11A mutant with product GMP complex structure Descriptor: GUANOSINE-5'-MONOPHOSPHATE, IMIDAZOLE, Oligoribonuclease, ... Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-27 Release date: 2022-09-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: PaOrn Oligoribonuclease D11A mutant with product GMP complex structure To Be Published
7VA3	PaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structure Descriptor: IMIDAZOLE, MANGANESE (II) ION, Oligoribonuclease, ... Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-27 Release date: 2022-09-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: PaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structure To Be Published
7VA6	PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure Descriptor: IMIDAZOLE, Oligoribonuclease, RNA (5'-R(P*GP*U)-3') Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-27 Release date: 2022-09-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure To Be Published
7V9Z	PaOrn Oligoribonuclease native structure Descriptor: IMIDAZOLE, Oligoribonuclease, SULFATE ION Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-27 Release date: 2022-09-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.85 Å) Cite: PaOrn Oligoribonuclease native structure To Be Published
3V9X	Crystal structure of RNase T in complex with a preferred ssDNA (AAA) with two Mg in the active site Descriptor: DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3'), MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012

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