PDB: 98 resultsInfo pagesStatus searchChemie searchBIRD

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6QH2	Solution NMR ensemble for a chimeric KH-S1 domain construct of exosomal polynucleotide phosphrylase at 298K compiled using the CoMAND method Descriptor: Polyribonucleotide nucleotidyltransferase Authors: ElGamacy, M, Truffault, V, Zhu, H, Coles, M. Deposit date: 2019-01-14 Release date: 2019-04-10 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mapping Local Conformational Landscapes of Proteins in Solution. Structure, 27, 2019
6QEY	IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and re-modelling properties Descriptor: ACETONITRILE, Insulin-like growth factor 2 mRNA-binding protein 1, PHOSPHATE ION Authors: Dagil, R, Ball, N.J, Ogrodowicz, R.W, Purkiss, A.G, Taylor, I.A, Ramos, A. Deposit date: 2019-01-09 Release date: 2019-03-27 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.2 Å) Cite: IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and re-modelling properties. Nucleic Acids Res., 47, 2019
6GQE	X-ray structure of KH1-2 domain of IMP3 Descriptor: Insulin-like growth factor 2 mRNA-binding protein 3 Authors: Janowski, R, Schlundt, A, Sattler, M, Niessing, D. Deposit date: 2018-06-07 Release date: 2019-04-24 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Combinatorial recognition of clustered RNA elements by the multidomain RNA-binding protein IMP3. Nat Commun, 10, 2019
6FBL	NMR Solution Structure of MINA-1(254-334) Descriptor: MINA-1 Authors: Michel, E, Allain, F. Deposit date: 2017-12-19 Release date: 2019-01-30 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans. Cell Death Differ., 26, 2019
6D6K	Structure of polyribonucleotide nucleotidyltransferase from Acinetobacter baumannii Descriptor: Polyribonucleotide nucleotidyltransferase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-04-21 Release date: 2018-05-02 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of polyribonucleotide nucleotidyltransferase from Acinetobacter baumannii to be published
5ZF6	Crystal structure of the dimeric human PNPase Descriptor: Polyribonucleotide nucleotidyltransferase 1, mitochondrial Authors: Yuan, H.S, Golzarroshan, B. Deposit date: 2018-03-02 Release date: 2018-08-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.796 Å) Cite: Crystal structure of dimeric human PNPase reveals why disease-linked mutants suffer from low RNA import and degradation activities. Nucleic Acids Res., 46, 2018
5YJJ	Crystal structure of PNPase from Staphylococcus epidermidis Descriptor: MAGNESIUM ION, PHOSPHATE ION, Polyribonucleotide nucleotidyltransferase Authors: Raj, R, Gopal, B. Deposit date: 2017-10-10 Release date: 2018-01-31 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Characterization of Staphylococcus epidermidis Polynucleotide phosphorylase and its interactions with ribonucleases RNase J1 and RNase J2. Biochem. Biophys. Res. Commun., 495, 2018
5WWZ	Crystal structure of the KH2 domain of human RNA-binding E3 ubiquitin-protein ligase MEX-3C Descriptor: RNA-binding E3 ubiquitin-protein ligase MEX3C, SULFATE ION Authors: Yang, L, Wang, C, Li, F, Gong, Q. Deposit date: 2017-01-05 Release date: 2017-08-23 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The human RNA-binding protein and E3 ligase MEX-3C binds the MEX-3-recognition element (MRE) motif with high affinity J. Biol. Chem., 292, 2017
5WWX	Crystal structure of the KH2 domain of human RNA-binding E3 ubiquitin-protein ligase MEX-3C complex with RNA Descriptor: NICKEL (II) ION, RNA (5'-R(P*AP*GP*AP*GP*U)-3'), RNA-binding E3 ubiquitin-protein ligase MEX3C Authors: Yang, L, Wang, C, Li, F, Gong, Q. Deposit date: 2017-01-05 Release date: 2017-08-23 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: The human RNA-binding protein and E3 ligase MEX-3C binds the MEX-3-recognition element (MRE) motif with high affinity J. Biol. Chem., 292, 2017
5WWW	Crystal structure of the KH1 domain of human RNA-binding E3 ubiquitin-protein ligase MEX-3C complex with RNA Descriptor: RNA (5'-R(*GP*UP*UP*UP*AP*G)-3'), RNA-binding E3 ubiquitin-protein ligase MEX3C Authors: Yang, L, Wang, C, Li, F, Gong, Q. Deposit date: 2017-01-05 Release date: 2017-08-23 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.798 Å) Cite: The human RNA-binding protein and E3 ligase MEX-3C binds the MEX-3-recognition element (MRE) motif with high affinity J. Biol. Chem., 292, 2017
4WAN	Crystal structure of Msl5 protein in complex with RNA at 1.8 A Descriptor: ACETATE ION, Branchpoint-bridging protein, GLYCEROL, ... Authors: Jacewicz, A, Smith, P, Chico, L, Schwer, B, Shuman, S. Deposit date: 2014-08-29 Release date: 2014-12-17 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs. Rna, 21, 2015
4WAL	Crystal structure of selenomethionine Msl5 protein in complex with RNA at 2.2 A Descriptor: Branchpoint-bridging protein, CHLORIDE ION, GLYCEROL, ... Authors: Jacewicz, A, Smith, P, Chico, L, Schwer, B, Shuman, S. Deposit date: 2014-08-29 Release date: 2014-12-17 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs. Rna, 21, 2015
4NBQ	Structure of the polynucleotide phosphorylase (CBU_0852) from Coxiella burnetii Descriptor: Polyribonucleotide nucleotidyltransferase, SULFATE ION Authors: Rudolph, M.J, Cheung, J, Franklin, M.C, Cassidy, M, Gary, E, Burshteyn, F, Love, J. Deposit date: 2013-10-23 Release date: 2015-06-17 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.9138 Å) Cite: Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins, 83, 2015
4LIJ	Crystal structure of a far upstream element (FUSE) binding protein 1 (FUBP1) from Homo sapiens at 1.95 A resolution Descriptor: Far upstream element-binding protein 1, PHOSPHATE ION Authors: Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology, Partnership for T-Cell Biology (TCELL) Deposit date: 2013-07-02 Release date: 2013-11-27 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of a far upstream element (FUSE) binding protein 1 (FUBP1) from Homo sapiens at 1.95 A resolution To be published
4JVY	Structure of the STAR (signal transduction and activation of RNA) domain of GLD-1 bound to RNA Descriptor: Female germline-specific tumor suppressor gld-1, RNA (5'-R(P*CP*UP*AP*AP*CP*AP*A)-3') Authors: Teplova, M, Hafner, M, Teplov, D, Essig, K, Tuschl, T, Patel, D.J. Deposit date: 2013-03-26 Release date: 2013-05-08 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.853 Å) Cite: Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites. Genes Dev., 27, 2013
4JVH	Structure of the star domain of quaking protein in complex with RNA Descriptor: Protein quaking, RNA (5'-R(*UP*UP*CP*AP*CP*UP*AP*AP*CP*AP*A)-3'), SULFATE ION Authors: Teplova, M, Hafner, M, Teplov, D, Essig, K, Tuschl, T, Patel, D.J. Deposit date: 2013-03-25 Release date: 2013-05-08 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (3.501 Å) Cite: Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites. Genes Dev., 27, 2013
4B8T	RNA BINDING PROTEIN Solution structure of the third KH domain of KSRP in complex with the G-rich target sequence. Descriptor: 5'-R(*AP*GP*GP*GP*UP)-3', KH-TYPE SPLICING REGULATORY PROTEIN Authors: Nicastro, G, Garcia-Mayoral, M.F, Hollingworth, D, Kelly, G, Martin, S.R, Briata, P, Gherzi, R, Ramos, A. Deposit date: 2012-08-30 Release date: 2012-11-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Noncanonical G Recognition Mediates Ksrp Regulation of Let-7 Biogenesis Nat.Struct.Mol.Biol., 19, 2012
4AM3	Crystal structure of C. crescentus PNPase bound to RNA Descriptor: PHOSPHATE ION, POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE, RNA, ... Authors: Hardwick, S.W, Gubbey, T, Hug, I, Jenal, U, Luisi, B.F. Deposit date: 2012-03-07 Release date: 2012-04-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal Structure of Caulobacter Crescentus Polynucleotide Phosphorylase Reveals a Mechanism of RNA Substrate Channelling and RNA Degradosome Assembly. Open Biol., 2, 2012
4AIM	Crystal structure of C. crescentus PNPase bound to RNase E recognition peptide Descriptor: PHOSPHATE ION, POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE, RIBONUCLEASE, ... Authors: Hardwick, S.W, Gubbey, T, Hug, I, Jenal, U, Luisi, B.F. Deposit date: 2012-02-10 Release date: 2012-04-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Crystal Structure of Caulobacter Crescentus Polynucleotide Phosphorylase Reveals a Mechanism of RNA Substrate Channelling and RNA Degradosome Assembly. Open Biol., 2, 2012
4AID	Crystal structure of C. crescentus PNPase bound to RNase E recognition peptide Descriptor: PHOSPHATE ION, POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE, RIBONUCLEASE, ... Authors: Hardwick, S.W, Gubbey, T, Hug, I, Jenal, U, Luisi, B.F. Deposit date: 2012-02-09 Release date: 2012-04-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal Structure of Caulobacter Crescentus Polynucleotide Phosphorylase Reveals a Mechanism of RNA Substrate Channelling and RNA Degradosome Assembly. Open Biol., 2, 2012
3VKE	Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides Descriptor: DNA (5'-D(P*AP*CP*CP*CP*CP*A)-3'), Poly(rC)-binding protein 1 Authors: Traore, D.A.K, Wilce, M.C.J, Wilce, J.A. Deposit date: 2011-11-15 Release date: 2012-02-29 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides Nucleic Acids Res., 40, 2012
3U1K	Crystal structure of human PNPase Descriptor: CITRIC ACID, Polyribonucleotide nucleotidyltransferase 1, mitochondrial Authors: Lin, C.L, Yuan, H.S. Deposit date: 2011-09-30 Release date: 2012-02-01 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Crystal structure of human polynucleotide phosphorylase: insights into its domain function in RNA binding and degradation Nucleic Acids Res., 40, 2012
3KRM	Imp1 kh34 Descriptor: GLYCEROL, Insulin-like growth factor 2 mRNA-binding protein 1 Authors: Chao, J.A, Singer, R.H, Almo, S.C, Patskovsky, Y. Deposit date: 2009-11-18 Release date: 2010-02-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.75 Å) Cite: ZBP1 recognition of beta-actin zipcode induces RNA looping. Genes Dev., 24, 2010
3CDI	Crystal structure of E. coli PNPase Descriptor: Polynucleotide phosphorylase Authors: Shi, Z, Yang, W.Z, Lin-Chao, S, Chak, K.F, Yuan, H.S. Deposit date: 2008-02-27 Release date: 2008-12-09 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation. Rna, 14, 2008
3AEV	Crystal structure of a/eIF2alpha-aDim2p-rRNA complex from Pyrococcus horikoshii OT3 Descriptor: Putative uncharacterized protein PH1566, RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*CP*UP*CP*C)-3'), Translation initiation factor 2 subunit alpha Authors: Tanokura, M, Jia, M.Z, Nagata, K. Deposit date: 2010-02-10 Release date: 2010-04-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.8 Å) Cite: An archaeal Dim2-like protein, aDim2p, forms a ternary complex with a/eIF2 alpha and the 3' end fragment of 16S rRNA J.Mol.Biol., 398, 2010

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