PDB: 5515 resultsInfo pagesStatus searchChemie searchBIRD

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5TMH	Structure of Zika virus NS5 Descriptor: GLYCEROL, Polyprotein, S-ADENOSYL-L-HOMOCYSTEINE, ... Authors: Wang, B, Tan, X, Song, J. Deposit date: 2016-10-12 Release date: 2017-02-08 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.278 Å) Cite: The structure of Zika virus NS5 reveals a conserved domain conformation. Nat Commun, 8, 2017
5TTD	Minor pilin FctB from S. pyogenes with engineered intramolecular isopeptide bond Descriptor: FORMIC ACID, Maltose-binding periplasmic protein,Pilin isopeptide linkage domain protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose Authors: Young, P.G, Kwon, H, Squire, C.J, Baker, E.N. Deposit date: 2016-11-02 Release date: 2017-03-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2 Å) Cite: Engineering a Lys-Asn isopeptide bond into an immunoglobulin-like protein domain enhances its stability. Sci Rep, 7, 2017
5TKY	Crystal structure of the co-translational Hsp70 chaperone Ssb in the ATP-bound, open conformation Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Putative uncharacterized protein Authors: Gumiero, A, Gese, G.V, Weyer, F.A, Lapouge, K, Sinning, I. Deposit date: 2016-10-10 Release date: 2016-11-16 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Interaction of the cotranslational Hsp70 Ssb with ribosomal proteins and rRNA depends on its lid domain. Nat Commun, 7, 2016
5TUJ	Ancestral Cationic Amino Acid Solute Binding Protein (AncCDT-1) Descriptor: Ancestral protein CDT-Anc1 Authors: Kaczmarski, J.A, Clifton, B.E, Carr, P.D, Jackson, C.J. Deposit date: 2016-11-06 Release date: 2017-12-06 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.352 Å) Cite: Evolution of cyclohexadienyl dehydratase from an ancestral solute-binding protein. Nat. Chem. Biol., 14, 2018
5UKD	PH INFLUENCES FLUORIDE COORDINATION NUMBER OF THE ALFX PHOSPHORYL TRANSFER TRANSITION STATE ANALOG Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CYTIDINE-5'-MONOPHOSPHATE, ... Authors: Schlichting, I, Reinstein, J. Deposit date: 1999-04-18 Release date: 1999-08-14 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: pH influences fluoride coordination number of the AlFx phosphoryl transfer transition state analog. Nat.Struct.Biol., 6, 1999
4HEC	Crystal structure of a putative uncharacterized protein from Mycobacterium tuberculosis Descriptor: MAGNESIUM ION, Putative uncharacterized protein Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2012-10-03 Release date: 2012-10-17 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Mycobacterium tuberculosis Rv2179c Protein Establishes a New Exoribonuclease Family with Broad Phylogenetic Distribution. J.Biol.Chem., 289, 2014
9EVX	cryoEM structure of Photosystem II averaged across S2-S3 states at 1.71 Angstrom resolution Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Hussein, R, Graca, A, Zouni, A, Messinger, J, Schroder, W.P. Deposit date: 2024-04-02 Release date: 2024-06-12 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (1.71 Å) Cite: Cryo-electron microscopy reveals hydrogen positions and water networks in photosystem II. Science, 384, 2024
8S54	RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state b (composite structure) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Zhan, Y, Grabber, F, Oberbeckmann, E, Dienemann, C, Cramer, P. Deposit date: 2024-02-22 Release date: 2024-04-17 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8S5N	RNA polymerase II core initially transcribing complex with an ordered RNA of 12 nt Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. Deposit date: 2024-02-24 Release date: 2024-04-10 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8QTQ	Thermostable WW domain Descriptor: WW domain Authors: Kovermann, M, Thomas, F. Deposit date: 2023-10-13 Release date: 2024-07-03 Method: SOLUTION NMR Cite: Thermostable WW-Domain Scaffold to Design Functional beta-Sheet Miniproteins. J.Am.Chem.Soc., 2024
8S55	RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state a (composite structure) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. Deposit date: 2024-02-22 Release date: 2024-04-17 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8S51	RNA polymerase II core initially transcribing complex with an ordered RNA of 8 nt Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. Deposit date: 2024-02-22 Release date: 2024-04-17 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8S52	RNA polymerase II core initially transcribing complex with an ordered RNA of 10 nt Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. Deposit date: 2024-02-22 Release date: 2024-04-17 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
5E7C	Macromolecular diffractive imaging using imperfect crystals - Bragg data Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Ayyer, K, Yefanov, O, Oberthuer, D, Roy-Chowdhury, S, Galli, L, Mariani, V, Basu, S, Coe, J, Conrad, C.E, Fromme, R, Schaffner, A, Doerner, K, James, D, Kupitz, C, Metz, M, Nelson, G, Xavier, P.L, Beyerlein, K.R, Schmidt, M, Sarrou, I, Spence, J.C.H, Weierstall, U, White, T.A, Yang, J.-H, Zhao, Y, Liang, M, Aquila, A, Hunter, M.S, Robinson, J.S, Koglin, J.E, Boutet, S, Fromme, P, Barty, A, Chapman, H.N. Deposit date: 2015-10-12 Release date: 2016-02-10 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (4.5 Å) Cite: Macromolecular diffractive imaging using imperfect crystals. Nature, 530, 2016
8G3G	CryoEM structure of yeast recombination mediator Rad52 Descriptor: DNA repair and recombination protein RAD52 Authors: Deveryshetty, J, Basore, K, Rau, M, Fitzpatrick, J.A.J, Antony, E. Deposit date: 2023-02-07 Release date: 2023-11-15 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Yeast Rad52 is a homodecamer and possesses BRCA2-like bipartite Rad51 binding modes. Nat Commun, 14, 2023
8GKC	Atomic model of the core modifying region of human fatty acid synthase in complex with TVB-2640 - C2 refinement Descriptor: Fatty acid synthase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, denifanstat Authors: Hasan, S.M.N, Keszei, A, Mazhab-Jafari, M.T. Deposit date: 2023-03-17 Release date: 2023-05-24 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.45 Å) Cite: Atomic model for core modifying region of human fatty acid synthase in complex with Denifanstat. Nat Commun, 14, 2023
8GBI	Porous framework formed by assembly of a bipyridyl-conjugated helical peptide Descriptor: 5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide, ACETONITRILE, LEU-(AIB)-ALA-CYS-LEU-CYS-CYS-(AIB)-LEU, ... Authors: Hess, S.S, Nguyen, A.I. Deposit date: 2023-02-26 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (0.95 Å) Cite: Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks. J.Am.Chem.Soc., 145, 2023
8GL0	Porous framework formed by assembly of a bipyridyl-conjugated helical peptide Descriptor: 5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide, ACETONITRILE, LEU-AIB-ALA-CYS-LEU-CYS-GLN-AIB-LEU, ... Authors: Hess, S.S, Nguyen, A.I. Deposit date: 2023-03-20 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (1.02 Å) Cite: Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks. J.Am.Chem.Soc., 145, 2023
8GK1	Porous framework formed by assembly of a bipyridyl-conjugated helical peptide Descriptor: 5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide, ACETONITRILE, LEU-AIB-ALA-AIB-LEU-AIB-GLN-AIB-LEU, ... Authors: Hess, S.S, Nguyen, A.I. Deposit date: 2023-03-16 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (0.83 Å) Cite: Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks. J.Am.Chem.Soc., 145, 2023
8GKX	Porous framework formed by assembly of a bipyridyl-conjugated helical peptide Descriptor: 5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide, LEU-AIB-ALA-AIB-LEU-HIS-GLN-AIB-LEU, ethyl 5'-formyl[2,2'-bipyridine]-5-carboxylate Authors: Hess, S.S, Nguyen, A.I. Deposit date: 2023-03-20 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (0.81 Å) Cite: Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks. J.Am.Chem.Soc., 145, 2023
8GJ7	Porous framework formed by assembly of a bipyridyl-conjugated helical peptide Descriptor: 5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide, LEU-AIB-ALA-CYS-LEU-AIB-CYS-AIB-LEU, NICOTINIC ACID Authors: Hess, S.S, Nguyen, A.I. Deposit date: 2023-03-15 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (1.19 Å) Cite: Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks. J.Am.Chem.Soc., 145, 2023
8GBA	Porous framework formed by assembly of a bipyridyl-conjugated helical peptide Descriptor: 5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide, LEU-(AIB)-ALA-SER-LEU-ALA-CYS-(AIB)-LEU, NICOTINIC ACID Authors: Hess, S.S, Nguyen, A.I. Deposit date: 2023-02-24 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (0.89 Å) Cite: Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks. J.Am.Chem.Soc., 145, 2023
8GKB	Porous framework formed by assembly of a bipyridyl-conjugated helical peptide Descriptor: 5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide, CADMIUM ION, LEU-AIB-ALA-SER-LEU-ALA-CYS-AIB-LEU, ... Authors: Hess, S.S, Nguyen, A.I. Deposit date: 2023-03-17 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (0.95 Å) Cite: Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks. J.Am.Chem.Soc., 145, 2023
8GBM	Porous framework formed by assembly of a bipyridyl-conjugated helical peptide Descriptor: 5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide, ACETATE ION, LEAD (II) ION, ... Authors: Hess, S.S, Nguyen, A.I. Deposit date: 2023-02-26 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (1.04 Å) Cite: Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks. J.Am.Chem.Soc., 145, 2023
8GL4	Porous framework formed by assembly of a bipyridyl-conjugated helical peptide Descriptor: 5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide, ACETONITRILE, LEU-AIB-ALA-CYS-LEU-CYS-GLN-AIB-LEU, ... Authors: Hess, S.S, Nguyen, A.I. Deposit date: 2023-03-20 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (0.76 Å) Cite: Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks. J.Am.Chem.Soc., 145, 2023

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