PDB: 45853 resultsInfo pagesStatus searchChemie searchBIRD

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3DM5	Structures of SRP54 and SRP19, the two proteins assembling the ribonucleic core of the Signal Recognition Particle from the archaeon Pyrococcus furiosus. Descriptor: ACETATE ION, GUANOSINE-5'-DIPHOSPHATE, SULFATE ION, ... Authors: Egea, P.F, Napetschnig, J, Walter, P, Stroud, R.M. Deposit date: 2008-06-30 Release date: 2008-11-04 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Structures of SRP54 and SRP19, the two proteins that organize the ribonucleic core of the signal recognition particle from Pyrococcus furiosus. Plos One, 3, 2008
3DN4	Iodobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant Descriptor: 2-HYDROXYETHYL DISULFIDE, Lysozyme, PHOSPHATE ION, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2008-07-01 Release date: 2008-11-11 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding. J.Mol.Biol., 385, 2009
3DQ9	Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 1: Structure 15 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
3DQM	Structure of the Yellow Fluorescent Protein Citrine Frozen at 750 Atmospheres: Structure 4 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.44 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
3IFF	2'-SeMe-A modified DNA decamer Descriptor: DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*(XUA)P*C)-3'), MAGNESIUM ION Authors: Sheng, J, Gan, J, Salon, J, Huang, Z. Deposit date: 2009-07-24 Release date: 2009-08-11 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Selenium modification at 2'-position of adenosine for nucleic acid structure studies To be Published
2V3Y	His361Ala Escherichia coli aminopeptidase P in complex with product Descriptor: CHLORIDE ION, MANGANESE (II) ION, TRIPEPTIDE (VALINE-PROLINE-LEUCINE), ... Authors: Graham, S.C, Guss, J.M. Deposit date: 2007-06-25 Release date: 2007-11-20 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Complexes of Mutants of Escherichia Coli Aminopeptidase P and the Tripeptide Substrate Valproleu. Arch.Biochem.Biophys., 469, 2008
3DRH	Crystal structure of Lactococcal OppA co-crystallized with Leu-enkephalin in an open conformation Descriptor: Oligopeptide-binding protein oppA, peptide AAAAAA Authors: Berntsson, R.P.-A, Doeven, M.K, Duurkens, R.H, Sengupta, D, Marrink, S.-J, Thunnissen, A.-M, Poolman, B, Slotboom, D.-J. Deposit date: 2008-07-11 Release date: 2009-03-31 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The structural basis for peptide selection by the transport receptor OppA Embo J., 28, 2009
2VGL	AP2 CLATHRIN ADAPTOR CORE Descriptor: ADAPTOR PROTEIN COMPLEX AP-2, ALPHA 2 SUBUNIT, AP-2 COMPLEX SUBUNIT BETA-1, ... Authors: Owen, D.J, Collins, B.M, McCoy, A.J, Evans, P.R. Deposit date: 2007-11-14 Release date: 2007-12-25 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Molecular Architecture and Functional Model of the Endocytic Ap2 Complex Cell(Cambridge,Mass.), 109, 2002
3IHC	Crystal structure of mouse Bcl-xl (wt) at pH 5.0 Descriptor: Bcl-2-like protein 1 Authors: Priyadarshi, A, Hwang, K.Y. Deposit date: 2009-07-30 Release date: 2010-04-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural insights into mouse anti-apoptotic Bcl-xl reveal affinity for Beclin 1 and gossypol. Biochem.Biophys.Res.Commun., 394, 2010
3DMO	1.6 A crystal structure of cytidine deaminase from Burkholderia pseudomallei Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, Cytidine deaminase, PHOSPHATE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2008-07-01 Release date: 2008-07-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.6 Å) Cite: 1.6 A crystal structure of cytidine deaminase from Burkholderia pseudomallei To be Published
2VJE	Crystal Structure of the MDM2-MDMX RING Domain Heterodimer Descriptor: CITRATE ANION, E3 UBIQUITIN-PROTEIN LIGASE MDM2, MDM4 PROTEIN, ... Authors: Mace, P.D, Linke, K, Smith, C.A, Day, C.L. Deposit date: 2007-12-10 Release date: 2008-05-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of the MDM2/MDMX RING domain heterodimer reveals dimerization is required for their ubiquitylation in trans. Cell Death Differ., 15, 2008
2VH7	Crystal structure of human common-type acylphosphatase Descriptor: ACYLPHOSPHATASE-1 Authors: Yeung, R.C.Y, Lam, Y, Wong, K.B. Deposit date: 2007-11-19 Release date: 2009-03-17 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.45 Å) Cite: A Rigidifying Salt-Bridge Favors the Activity of Thermophilic Enzyme at High Temperatures at the Expense of Low-Temperature Activity. Plos Biol., 9, 2011
3DQ2	Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 1: Structure 23 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
2VIO	Fragment-Based Discovery of Mexiletine Derivatives as Orally Bioavailable Inhibitors of Urokinase-Type Plasminogen Activator Descriptor: 4-(2-aminoethoxy)-3,5-dichlorobenzoic acid, ACETATE ION, UROKINASE-TYPE PLASMINOGEN ACTIVATOR CHAIN B Authors: Frederickson, M, Callaghan, O, Chessari, G, Congreve, M, Cowan, S.R, Matthews, J.E, McMenamin, R, Smith, D, Vinkovic, M, Wallis, N.G. Deposit date: 2007-12-05 Release date: 2008-01-22 Last modified: 2017-07-05 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Fragment-Based Discovery of Mexiletine Derivatives as Orally Bioavailable Inhibitors of Urokinase-Type Plasminogen Activator J.Med.Chem., 51, 2008
3DQC	Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 3: Structure 13 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
3DRF	Lactococcal OppA complexed with an endogenous peptide in the closed conformation Descriptor: Oligopeptide-binding protein oppA, endogenous peptide Authors: Berntsson, R.P.-A, Doeven, M.K, Duurkens, R.H, Sengupta, D, Marrink, S.-J, Thunnissen, A.-M, Poolman, B, Slotboom, D.-J. Deposit date: 2008-07-11 Release date: 2009-03-31 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.3 Å) Cite: The structural basis for peptide selection by the transport receptor OppA Embo J., 28, 2009
3DVN	Crystal structure of K63-specific fab Apu2.16 bound to K63-linked di-ubiquitin Descriptor: Human IgG1 fab fragment heavy chain, Human IgG1 fab fragment light chain, Ubiquitin, ... Authors: Hymowitz, S.G. Deposit date: 2008-07-18 Release date: 2008-09-30 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Ubiquitin chain editing revealed by polyubiquitin linkage-specific antibodies. Cell(Cambridge,Mass.), 134, 2008
3DUF	Snapshots of catalysis in the E1 subunit of the pyruvate dehydrogenase multi-enzyme complex Descriptor: 2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-[(1R)-1-HYDROXYETHYL]-3-METHYL-2-THIENYL}ETHYL TRIHYDROGEN DIPHOSPHATE, Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, MAGNESIUM ION, ... Authors: Pei, X.Y, Titman, C.M, Frank, R.A.W, Leeper, F.J, Luisi, B.F. Deposit date: 2008-07-17 Release date: 2009-01-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Snapshots of catalysis in the e1 subunit of the pyruvate dehydrogenase multienzyme complex Structure, 16, 2008
3DZN	Thaumatin by LB nanotemplate method before high X-Ray dose on ESRF ID29 beamline Descriptor: L(+)-TARTARIC ACID, Thaumatin-1 Authors: Tripathi, S, Pechkova, E, Nicolini, C. Deposit date: 2008-07-30 Release date: 2009-07-07 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Radiation damage in protein structural characterization by Synchrotron Radiation: State of the art and Nanotechnology-based perspective To be Published
3DKR	Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism Descriptor: ACETATE ION, Esterase D Authors: Bennett, M.D, Delabre, M.-L, Holland, R, Norris, G.E. Deposit date: 2008-06-25 Release date: 2009-06-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of esterase D from lactobacillus rhamnosus To be Published
3I8Z	Crystal structure of human chromobox homolog 4 (CBX4) Descriptor: E3 SUMO-protein ligase CBX4 Authors: Amaya, M.F, Zhihong, L, Loppnau, P, Kozieradzki, I, Edwards, A.M, Arrowsmith, C.H, Weigelt, J, Bountra, C, Bochkarev, A, Min, J, Ouyang, H, Structural Genomics Consortium (SGC) Deposit date: 2009-07-10 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Crystal structure of human chromobox homolog 4 (CBX4) To be Published
3DMD	Structures and Conformations in Solution of the Signal Recognition Particle Receptor from the archaeon Pyrococcus furiosus Descriptor: GLYCEROL, SULFATE ION, Signal recognition particle receptor Authors: Egea, P.F, Tsuruta, H, Napetschnig, J, Walter, P, Stroud, R.M. Deposit date: 2008-06-30 Release date: 2008-11-11 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Structures of the Signal Recognition Particle Receptor from the Archaeon Pyrococcus furiosus: Implications for the Targeting Step at the Membrane. Plos One, 3, 2008
3DN0	Pentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant Descriptor: 1,2,3,4,5-pentafluorobenzene, 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2008-07-01 Release date: 2008-11-11 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding. J.Mol.Biol., 385, 2009
3E0A	Thaumatin by Classical hanging drop method after high X-Ray dose on ESRF ID29 beamline Descriptor: L(+)-TARTARIC ACID, Thaumatin-1 Authors: Tripathi, S, Pechkova, E, Nicolini, C. Deposit date: 2008-07-31 Release date: 2009-07-07 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Radiation damage in protein structural characterization by Synchrotron Radiation: State of the art and Nanotechnology-based perspective To be Published
3E0I	Cu2+ substituted Aquifex aeolicus KDO8PS in complex with PEP Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, COPPER (II) ION, PHOSPHATE ION, ... Authors: Gatti, D.L. Deposit date: 2008-07-31 Release date: 2009-05-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.703 Å) Cite: Electronic structure of the metal center in the Cd(2+), Zn(2+), and Cu(2+) substituted forms of KDO8P synthase: implications for catalysis. Biochemistry, 48, 2009

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