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2I5V
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BU of 2i5v by Molmil
Crystal structure of OspA mutant
Descriptor: Outer surface protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K, Terechko, V, Koide, S.
Deposit date:2006-08-25
Release date:2007-12-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-Resolution Structure of a Self-Assembly-Competent Form of a Hydrophobic Peptide Captured in a Soluble β-Sheet Scaffold.
J.Mol.Biol., 378, 2008
5OD9
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BU of 5od9 by Molmil
Structure of the engineered metalloesterase MID1sc9
Descriptor: (2~{S})-2-phenylpropanoic acid, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Studer, S, Mittl, P.R.E, Hilvert, D.
Deposit date:2017-07-05
Release date:2018-12-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Evolution of a highly active and enantiospecific metalloenzyme from short peptides.
Science, 362, 2018
2FKJ
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BU of 2fkj by Molmil
The crystal structure of engineered OspA
Descriptor: Outer Surface Protein A
Authors:Makabe, K, Terechko, V, Gawlak, G, Yan, S, Koide, S.
Deposit date:2006-01-04
Release date:2006-11-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2FKG
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BU of 2fkg by Molmil
The Crystal Structure of Engineered OspA
Descriptor: Outer Surface Protein A
Authors:Makabe, K, Terechko, V, Gawlak, G, Yan, S, Koide, S.
Deposit date:2006-01-04
Release date:2006-11-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2H3T
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BU of 2h3t by Molmil
trans-(4-aminomethyl)phenylazobenzoic acid-aPP bound to DPC micelles
Descriptor: (3-{(E)-[3-(AMINOMETHYL)PHENYL]DIAZENYL}PHENYL)ACETIC ACID, Pancreatic hormone
Authors:Jurt, S, Aemissegger, A, Guentert, P, Zerbe, O, Hilvert, D.
Deposit date:2006-05-23
Release date:2006-09-12
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:A Photoswitchable Miniprotein Based on the Sequence of Avian Pancreatic Polypeptide
Angew.Chem.Int.Ed.Engl., 45, 2006
2I9O
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BU of 2i9o by Molmil
Design of bivalent miniprotein consisting of two independent elements, a b-hairpin peptide and a-helix peptide, tethered by eight glycines
Descriptor: MHB8A peptide
Authors:Pantoja-Uceda, D, Pineda-Lucena, A.
Deposit date:2006-09-06
Release date:2007-09-18
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Design of minimal independt protein motifs able to fold autonomously
To be Published
2I5Z
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BU of 2i5z by Molmil
The crystal structure of OspA mutant
Descriptor: Outer surface protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K, Terechko, V, Koide, S.
Deposit date:2006-08-26
Release date:2007-07-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Hydrophobic surface burial is the major stability determinant of a flat, single-layer beta-sheet.
J.Mol.Biol., 368, 2007
2I7U
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BU of 2i7u by Molmil
Structural and Dynamical Analysis of a Four-Alpha-Helix Bundle with Designed Anesthetic Binding Pockets
Descriptor: Four-alpha-helix bundle
Authors:Ma, D, Brandon, N.R, Cui, T, Bondarenko, V, Canlas, C, Johansson, J.S, Tang, P, Xu, Y.
Deposit date:2006-08-31
Release date:2007-09-11
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Four-alpha-helix bundle with designed anesthetic binding pockets. Part I: structural and dynamical analyses.
Biophys.J., 94, 2008
2I9M
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BU of 2i9m by Molmil
Design of a-helix based on conformationally restricted libraries
Descriptor: MHA6
Authors:Pantoja-Uceda, D, Pineda-Lucena, A.
Deposit date:2006-09-06
Release date:2007-09-18
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Design of minimal independent protein motifs able to fold autonomously
To be Published
2IGR
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BU of 2igr by Molmil
Solution structure of CB1a, a novel anticancer peptide derived from natural antimicrobial peptide cecropin B
Descriptor: Anticancer peptide CB1a
Authors:Wu, J.-M.
Deposit date:2006-09-24
Release date:2006-11-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure and function of a custom anticancer peptide, CB1a
Peptides, 30, 2009
8F6Q
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BU of 8f6q by Molmil
CryoEM structure of designed modular protein oligomer C8-71
Descriptor: C8-71
Authors:Redler, R.L, Edman, N.I, Baker, D, Ekiert, D, Bhabha, G.
Deposit date:2022-11-17
Release date:2023-11-29
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies.
Biorxiv, 2023
8FWD
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BU of 8fwd by Molmil
Fast and versatile sequence- independent protein docking for nanomaterials design using RPXDock
Descriptor: O43-rpxdoc-EK1_A, O43-rpxdoc-EK1_B
Authors:Skotheim, R, Borst, A.J, Baker, D.
Deposit date:2023-01-20
Release date:2023-05-10
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Fast and versatile sequence-independent protein docking for nanomaterials design using RPXDock.
Plos Comput.Biol., 19, 2023
8FIH
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BU of 8fih by Molmil
Multi-state design of two-state switchable hinge proteins
Descriptor: 3hb05, PHOSPHATE ION
Authors:Bera, A.K, Broerman, A, Baker, D.
Deposit date:2022-12-16
Release date:2023-08-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Design of stimulus-responsive two-state hinge proteins.
Science, 381, 2023
8FIT
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BU of 8fit by Molmil
Multi-state design of two-state switchable hinge proteins
Descriptor: cs074A
Authors:Bera, A.K, Praetorius, F, Baker, D.
Deposit date:2022-12-16
Release date:2023-08-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Design of stimulus-responsive two-state hinge proteins.
Science, 381, 2023
8FIN
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BU of 8fin by Molmil
Multi-state design of two-state switchable hinge proteins
Descriptor: cs207A
Authors:Bera, A.K, Leung, P.J.Y, Baker, D.
Deposit date:2022-12-16
Release date:2023-08-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Design of stimulus-responsive two-state hinge proteins.
Science, 381, 2023
8FJF
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BU of 8fjf by Molmil
The three-repeat design H10
Descriptor: H10
Authors:Bera, A.K, An, L, Baker, D.
Deposit date:2022-12-19
Release date:2023-09-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Hallucination of closed repeat proteins containing central pockets.
Nat.Struct.Mol.Biol., 30, 2023
8FJE
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BU of 8fje by Molmil
The five-repeat design E8
Descriptor: E8
Authors:Bera, A.K, An, L, Baker, D.
Deposit date:2022-12-19
Release date:2023-09-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Hallucination of closed repeat proteins containing central pockets.
Nat.Struct.Mol.Biol., 30, 2023
8FJG
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BU of 8fjg by Molmil
The two-repeat design H12
Descriptor: H12
Authors:Bera, A.K, An, L, Baker, D.
Deposit date:2022-12-19
Release date:2023-09-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Hallucination of closed repeat proteins containing central pockets.
Nat.Struct.Mol.Biol., 30, 2023
1UO0
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BU of 1uo0 by Molmil
Structure Based Engineering of Internal Molecular Surfaces Of Four Helix Bundles
Descriptor: GENERAL CONTROL PROTEIN GCN4
Authors:Yadav, M.K, Redman, J.E, Alvarez-Gutierrez, J.M, Zhang, Y, Stout, C.D, Ghadiri, M.R.
Deposit date:2003-09-15
Release date:2004-10-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides
Biochemistry, 44, 2005
1UO5
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BU of 1uo5 by Molmil
Structure Based Engineering of Internal Molecular Surfaces Of Four Helix Bundles
Descriptor: CHLORIDE ION, GENERAL CONTROL PROTEIN GCN4, iodobenzene
Authors:Yadav, M.K, Redman, J.E, Alvarez-Gutierrez, J.M, Zhang, Y.
Deposit date:2003-09-15
Release date:2004-10-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides
Biochemistry, 44, 2005
8FAR
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BU of 8far by Molmil
Accurate computational design of genetically encoded 3D protein crystals
Descriptor: I432-1-CC
Authors:Bera, A.K, Li, Z, Baker, D.
Deposit date:2022-11-28
Release date:2023-11-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.66 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8GQP
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BU of 8gqp by Molmil
Complex of D-protein binder D-19437 and L-target L-Pep-1
Descriptor: D-binder, L-pep1
Authors:Liang, M.F, Li, S.C, Wang, T.Y, Liu, L, Lu, P.L.
Deposit date:2022-08-30
Release date:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of D-protein binder D-19437 and L-target L-Pep-1
To Be Published
8GEL
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BU of 8gel by Molmil
Cryo-EM structure of synthetic tetrameric building block sC4
Descriptor: sC4
Authors:Redler, R.L, Huddy, T.F, Hsia, Y, Baker, D, Ekiert, D, Bhabha, G.
Deposit date:2023-03-07
Release date:2024-03-13
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Blueprinting extendable nanomaterials with standardized protein blocks.
Nature, 627, 2024
8GA7
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BU of 8ga7 by Molmil
Geometrically programmable nanomaterial construction using regularized protein building blocks
Descriptor: THR5
Authors:Huddy, T, Bera, A.K, Baker, D, Kang, A.
Deposit date:2023-02-22
Release date:2024-03-13
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:Blueprinting extendable nanomaterials with standardized protein blocks.
Nature, 627, 2024
8G9J
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BU of 8g9j by Molmil
Geometrically programmable nanomaterial construction using regularized protein building blocks
Descriptor: THR1
Authors:Huddy, T, Bera, A.K, Baker, D.
Deposit date:2023-02-21
Release date:2024-03-13
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Blueprinting extendable nanomaterials with standardized protein blocks.
Nature, 627, 2024

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