Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 137 results

6OFR
DownloadVisualize
BU of 6ofr by Molmil
The crystal structure of the outer membrane transporter YddB from Escherichia coli
Descriptor: GLYCEROL, MAGNESIUM ION, TonB-dependent outer membrane receptor, ...
Authors:Grinter, R.
Deposit date:2019-04-01
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Protease-associated import systems are widespread in Gram-negative bacteria.
Plos Genet., 15, 2019
4ZGV
DownloadVisualize
BU of 4zgv by Molmil
The Crystal Structure of the Ferredoxin Receptor FusA from Pectobacterium atrosepticum SCRI1043
Descriptor: Ferredoxin receptor, LAURYL DIMETHYLAMINE-N-OXIDE, octyl beta-D-glucopyranoside
Authors:Grinter, R, Josts, I, Roszak, A.W, Cogdell, R.J, Walker, D.
Deposit date:2015-04-24
Release date:2016-08-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of the bacterial plant-ferredoxin receptor FusA.
Nat Commun, 7, 2016
8P98
DownloadVisualize
BU of 8p98 by Molmil
BtuB3G3 bound to cyanocobalamin with ordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, Vitamin B12 transporter BtuB
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8P97
DownloadVisualize
BU of 8p97 by Molmil
BtuB3G3 bound to cyanocobalamin with disordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, TonB-dependent receptor
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8AA4
DownloadVisualize
BU of 8aa4 by Molmil
SusC components of the dextran utilisation system (utilisome)
Descriptor: SusC homolog
Authors:White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
Deposit date:2022-06-29
Release date:2023-06-07
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
5FQ8
DownloadVisualize
BU of 5fq8 by Molmil
Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 3-decanoyloxypropyl decanoate, BT_2262 (UNCHARACTERISED LIPOPROTEIN), ...
Authors:Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B.
Deposit date:2015-12-07
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
Nature, 541, 2017
5FQ6
DownloadVisualize
BU of 5fq6 by Molmil
Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron
Descriptor: 3-decanoyloxypropyl decanoate, BT_2261, CALCIUM ION, ...
Authors:Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B.
Deposit date:2015-12-07
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
Nature, 541, 2017
5FQ7
DownloadVisualize
BU of 5fq7 by Molmil
Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron
Descriptor: BT_2261, BT_2262, BT_2263, ...
Authors:Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B.
Deposit date:2015-12-07
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
Nature, 541, 2017
9C4O
DownloadVisualize
BU of 9c4o by Molmil
Cryo-EM structure of PqqU with ligand PQQ
Descriptor: CALCIUM ION, PYRROLOQUINOLINE QUINONE, Pyrroloquinoline quinone transporter
Authors:Munder, F, Venugopal, H, Grinter, R.
Deposit date:2024-06-04
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (1.99 Å)
Cite:High-affinity PQQ import is widespread in Gram-negative bacteria.
To Be Published
4EPA
DownloadVisualize
BU of 4epa by Molmil
The crystal structure of the ferric yersiniabactin uptake receptor FyuA from Yersinia pestis
Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, Pesticin receptor
Authors:Lukacik, P, Barnard, T.J, Buchanan, S.K.
Deposit date:2012-04-17
Release date:2012-06-20
Last modified:2012-07-04
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural engineering of a phage lysin that targets Gram-negative pathogens.
Proc.Natl.Acad.Sci.USA, 109, 2012
3FHH
DownloadVisualize
BU of 3fhh by Molmil
Crystal structure of the heme/hemoglobin outer membrane transporter ShuA from Shigella dysenteriae
Descriptor: LEAD (II) ION, Outer membrane heme receptor ShuA, octyl beta-D-glucopyranoside
Authors:Brillet, K, Cobessi, D.
Deposit date:2008-12-09
Release date:2009-07-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the heme/hemoglobin outer membrane receptor ShuA from Shigella dysenteriae: heme binding by an induced fit mechanism.
Proteins, 78, 2010
4RVW
DownloadVisualize
BU of 4rvw by Molmil
Structure of the bacterial Zn-transporter ZnuD from Neisseria meningitidis (soaked with 20 micromolar Zinc)
Descriptor: SULFATE ION, ZINC ION, ZnuD
Authors:Calmettes, C, Moraes, T.F.
Deposit date:2014-11-28
Release date:2015-08-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4.477 Å)
Cite:The molecular mechanism of Zinc acquisition by the neisserial outer-membrane transporter ZnuD.
Nat Commun, 6, 2015
2IAH
DownloadVisualize
BU of 2iah by Molmil
Crystal structure of the ferripyoverdine receptor of the outer membrane of Pseudomonas aeruginosa bound to ferripyoverdine.
Descriptor: (1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM, FE (III) ION, Ferripyoverdine receptor, ...
Authors:Wirth, C, Pattus, F, Cobessi, D.
Deposit date:2006-09-08
Release date:2007-09-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:From the periplasmic signaling domain to the extracellular face of an outer membrane signal transducer of Pseudomonas aeruginosa: crystal structure of the ferric pyoverdine outer membrane receptor.
J.Mol.Biol., 368, 2007
4RDT
DownloadVisualize
BU of 4rdt by Molmil
Structure of the bacterial Zn-transporter ZnuD from Neisseria meningitidis (flexible conformation bound to a zinc ion)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, GLYCEROL, SULFATE ION, ...
Authors:Calmettes, C, El Bakkouri, M, Moraes, T.F.
Deposit date:2014-09-19
Release date:2015-08-19
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The molecular mechanism of Zinc acquisition by the neisserial outer-membrane transporter ZnuD.
Nat Commun, 6, 2015
2O5P
DownloadVisualize
BU of 2o5p by Molmil
Crystal structure of the full length ferric pyoverdine outer membrane receptor FpvA of Pseudomonas aeruginosa in its apo form
Descriptor: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL, Ferripyoverdine receptor, PHOSPHATE ION
Authors:Cobessi, D.
Deposit date:2006-12-06
Release date:2007-10-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:A beta strand lock exchange for signal transduction in TonB-dependent transducers on the basis of a common structural motif.
Structure, 15, 2007
6Y47
DownloadVisualize
BU of 6y47 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with BCV-L5
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Ferric enterobactin receptor, ...
Authors:Naismith, J.H, Moynie, L.M.
Deposit date:2020-02-19
Release date:2021-01-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
8THE
DownloadVisualize
BU of 8the by Molmil
Cryo-EM structure of Pseudomonas aeruginosa TonB-dependent transporter PhuR in complex with synthetic antibody and heme
Descriptor: (2~{R},4~{R},5~{S},6~{S})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[[(2~{R},3~{S},4~{S},5~{R},6~{S})-5-[[(3~{R})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{R},4~{R},5~{S},6~{S})-3-oxidanyl-5-[[(3~{R})-3-oxidanyltetradecanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{S})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]-4,5-bis(oxidanyl)oxane-2-carboxylic acid, Heme/hemoglobin uptake outer membrane receptor PhuR, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Knejski, P, Erramilli, S.K, Kossiakoff, A.A.
Deposit date:2023-07-15
Release date:2024-01-31
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Chaperone-assisted cryo-EM structure of P. aeruginosa PhuR reveals molecular basis for heme binding.
Structure, 32, 2024
6E4V
DownloadVisualize
BU of 6e4v by Molmil
The Crystal Structure of FhuE from E. coli in complex with its substrate Coprogen
Descriptor: COPROGEN, FhuE receptor, octyl beta-D-glucopyranoside
Authors:Grinter, R, Lithgow, T.
Deposit date:2018-07-18
Release date:2019-04-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Determination of the molecular basis for coprogen import by Gram-negative bacteria.
Iucrj, 6, 2019
4RDR
DownloadVisualize
BU of 4rdr by Molmil
Structure of the bacterial Zn-transporter ZnuD from Neisseria meningitidis (locked conformation bound to zinc and cadmium ions)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,2-ETHANEDIOL, CADMIUM ION, ...
Authors:Calmettes, C, Moraes, T.F.
Deposit date:2014-09-19
Release date:2015-08-19
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (2.472 Å)
Cite:The molecular mechanism of Zinc acquisition by the neisserial outer-membrane transporter ZnuD.
Nat Commun, 6, 2015
7OBW
DownloadVisualize
BU of 7obw by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) from Pseudomonas aeruginosa in complex with TCV-L6
Descriptor: FE (III) ION, Ferric enterobactin receptor, [4-[[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-[2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]ethanoylamino]propanoyl]amino]propanoyl]amino]methyl]-1,2,3-triazol-1-yl]methyl 4-[4-[(5~{S})-5-(acetamidomethyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]-2-fluoranyl-phenyl]piperazine-1-carboxylate
Authors:Moynie, L, Naismith, J.H.
Deposit date:2021-04-23
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa .
Acs Infect Dis., 8, 2022
7NSU
DownloadVisualize
BU of 7nsu by Molmil
ColicinE9 intact translocation complex
Descriptor: Colicin-E9, Outer membrane protein F, Tol-Pal system protein TolB, ...
Authors:Webby, M.N, Kleanthous, C, Lukoyanova, N, Housden, N.G.
Deposit date:2021-03-08
Release date:2021-08-11
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Porin threading drives receptor disengagement and establishes active colicin transport through Escherichia coli OmpF.
Embo J., 40, 2021
2W75
DownloadVisualize
BU of 2w75 by Molmil
Structures of P. aeruginosa FpvA bound to heterologous pyoverdines: Apo-FpvA
Descriptor: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL, FERRIPYOVERDINE RECEPTOR, PHOSPHATE ION
Authors:Greenwald, J, Nader, M, Celia, H, Gruffaz, C, Meyer, J.-M, Schalk, I.J, Pattus, F.
Deposit date:2008-12-20
Release date:2009-05-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Fpva Bound to Non-Cognate Pyoverdines: Molecular Basis of Siderophore Recognition by an Iron Transporter.
Mol.Microbiol., 72, 2009
2W76
DownloadVisualize
BU of 2w76 by Molmil
Structures of P. aeruginosa FpvA bound to heterologous pyoverdines: FpvA-Pvd(Pa6)-Fe complex
Descriptor: (1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM, 3,6,9,12,15-PENTAOXATRICOSAN-1-OL, FE (III) ION, ...
Authors:Greenwald, J, Nader, M, Celia, H, Gruffaz, C, Meyer, J.-M, Schalk, I.J, Pattus, F.
Deposit date:2008-12-20
Release date:2009-05-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Fpva Bound to Non-Cognate Pyoverdines: Molecular Basis of Siderophore Recognition by an Iron Transporter.
Mol.Microbiol., 72, 2009
1BY3
DownloadVisualize
BU of 1by3 by Molmil
FHUA FROM E. COLI
Descriptor: N-OCTYL-2-HYDROXYETHYL SULFOXIDE, PROTEIN (FERRICHROME-IRON RECEPTOR PRECURSOR (FHUA))
Authors:Locher, K.P, Rees, B, Koebnik, R, Mitschler, A, Moulinier, L, Rosenbusch, J.P, Moras, D.
Deposit date:1998-10-22
Release date:1999-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Transmembrane signaling across the ligand-gated FhuA receptor: crystal structures of free and ferrichrome-bound states reveal allosteric changes.
Cell(Cambridge,Mass.), 95, 1998
5T4Y
DownloadVisualize
BU of 5t4y by Molmil
Crystal structure of BT1762-1763
Descriptor: MAGNESIUM ION, SusC homolog, SusD homolog
Authors:van den Berg, B.
Deposit date:2016-08-30
Release date:2016-12-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
Nature, 541, 2017

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon