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PDB: 98 results

4WE0
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JC Polyomavirus VP1 five-fold pore mutant P223M
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Major capsid protein VP1
Authors:Stroh, L.J, Stehle, T.
Deposit date:2014-09-09
Release date:2015-02-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Modulation of a Pore in the Capsid of JC Polyomavirus Reduces Infectivity and Prevents Exposure of the Minor Capsid Proteins.
J.Virol., 89, 2015
8U5L
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BU of 8u5l by Molmil
MAU868, a novel human-derived monoclonal neutralizing antibody targeting BK virus VP1
Descriptor: Capsid protein VP1, scFv fragment of the monoclonal antibody MAU868
Authors:Knapp, M.S, Ornelas, E.
Deposit date:2023-09-12
Release date:2024-08-14
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Nonclinical and clinical characterization of MAU868, a novel human-derived monoclonal neutralizing antibody targeting BK polyomavirus VP1.
Am J Transplant, 24, 2024
3IYS
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Homology model of avian polyomavirus asymmetric unit
Descriptor: Major capsid protein VP1
Authors:Shen, P.S, Enderlein, D, Nelson, C.D.S, Carter, W.S, Kawano, M, Xing, L, Swenson, R.D, Olson, N.H, Baker, T.S, Cheng, R.H, Atwood, W.J, Johne, R, Belnap, D.M.
Deposit date:2010-04-19
Release date:2011-01-26
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (11.3 Å)
Cite:The structure of avian polyomavirus reveals variably sized capsids, non-conserved inter-capsomere interactions, and a possible location of the minor capsid protein VP4.
Virology, 411, 2011
1CN3
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INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY
Descriptor: COAT PROTEIN VP1, FRAGMENT OF COAT PROTEIN VP2
Authors:Chen, X, Stehle, T, Harrison, S.C.
Deposit date:1999-05-24
Release date:1999-06-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Interaction of polyomavirus internal protein VP2 with the major capsid protein VP1 and implications for participation of VP2 in viral entry.
EMBO J., 17, 1998
4MJ0
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BK Polyomavirus VP1 pentamer in complex with GD3 oligosaccharide
Descriptor: CHLORIDE ION, GLYCEROL, N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid, ...
Authors:Neu, U, Stroh, L.J, Stehle, T.
Deposit date:2013-09-03
Release date:2013-11-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Structure-Guided Mutation in the Major Capsid Protein Retargets BK Polyomavirus.
Plos Pathog., 9, 2013
4MJ1
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unliganded BK Polyomavirus VP1 pentamer
Descriptor: CHLORIDE ION, GLYCEROL, VP1 capsid protein
Authors:Neu, U, Stroh, L.J, Stehle, T.
Deposit date:2013-09-03
Release date:2013-11-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Structure-Guided Mutation in the Major Capsid Protein Retargets BK Polyomavirus.
Plos Pathog., 9, 2013
1VPN
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BU of 1vpn by Molmil
UNASSEMBLED POLYOMAVIRUS VP1 PENTAMER
Descriptor: POLYOMAVIRUS VP1 PENTAMER
Authors:Stehle, T, Harrison, S.C.
Deposit date:1997-03-07
Release date:1997-05-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:High-resolution structure of a polyomavirus VP1-oligosaccharide complex: implications for assembly and receptor binding.
Embo J., 16, 1997
1VPS
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POLYOMAVIRUS VP1 PENTAMER COMPLEXED WITH A DISIALYLATED HEXASACCHARIDE
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, POLYOMAVIRUS VP1 PENTAMER
Authors:Stehle, T, Harrison, S.C.
Deposit date:1997-03-07
Release date:1997-05-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-resolution structure of a polyomavirus VP1-oligosaccharide complex: implications for assembly and receptor binding.
Embo J., 16, 1997
3BWQ
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Structure of free SV40 VP1 pentamer
Descriptor: Capsid protein VP1
Authors:Neu, U, Stehle, T.
Deposit date:2008-01-10
Release date:2008-03-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of GM1 ganglioside recognition by simian virus 40.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3NXG
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BU of 3nxg by Molmil
JC polyomavirus VP1
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Major capsid protein VP1
Authors:Neu, U, Stroeh, L.J, Stehle, T.
Deposit date:2010-07-13
Release date:2010-11-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure-function analysis of the human JC polyomavirus establishes the LSTc pentasaccharide as a functional receptor motif.
Cell Host Microbe, 8, 2010
3NXD
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JC polyomavirus VP1 in complex with LSTc
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Major capsid protein VP1, ...
Authors:Neu, U, Stroeh, L.J, Stehle, T.
Deposit date:2010-07-13
Release date:2010-11-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-function analysis of the human JC polyomavirus establishes the LSTc pentasaccharide as a functional receptor motif.
Cell Host Microbe, 8, 2010
3S7X
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Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant
Descriptor: CHLORIDE ION, GLYCEROL, Major capsid protein VP1, ...
Authors:Neu, U, Wang, J, Stehle, T.
Deposit date:2011-05-27
Release date:2011-06-29
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of the major capsid proteins of the human KI and WU polyomaviruses.
J.Virol., 85, 2011
3S7V
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BU of 3s7v by Molmil
Unassembled KI Polyomavirus VP1 Pentamer
Descriptor: Major capsid protein VP1
Authors:Neu, U, Stehle, T.
Deposit date:2011-05-27
Release date:2011-06-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structures of the major capsid proteins of the human KI and WU polyomaviruses.
J.Virol., 85, 2011
5CPU
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BU of 5cpu by Molmil
Crystal structure of murine polyomavirus PTA strain VP1
Descriptor: GLYCEROL, VP1
Authors:Liaci, A.M, Buch, M.H.C, Neu, U, Stehle, T.
Deposit date:2015-07-21
Release date:2015-10-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural and Functional Analysis of Murine Polyomavirus Capsid Proteins Establish the Determinants of Ligand Recognition and Pathogenicity.
Plos Pathog., 11, 2015
5CQ0
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Crystal structure of murine polyomavirus RA strain VP1 in complex with the GD1a glycan
Descriptor: Capsid protein VP1, GLYCEROL, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose, ...
Authors:Buch, M.H.C, Liaci, A.M, Neu, U, Stehle, T.
Deposit date:2015-07-21
Release date:2015-10-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Functional Analysis of Murine Polyomavirus Capsid Proteins Establish the Determinants of Ligand Recognition and Pathogenicity.
Plos Pathog., 11, 2015
3BWR
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BU of 3bwr by Molmil
SV40 VP1 pentamer in complex with GM1 oligosaccharide
Descriptor: 1,2-ETHANEDIOL, Capsid protein VP1, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Neu, U, Stehle, T.
Deposit date:2008-01-10
Release date:2008-03-04
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis of GM1 ganglioside recognition by simian virus 40.
Proc.Natl.Acad.Sci.Usa, 105, 2008
1SID
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BU of 1sid by Molmil
MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, POLYOMAVIRUS COAT PROTEIN VP1
Authors:Stehle, T, Harrison, S.C.
Deposit date:1995-12-12
Release date:1996-06-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments.
Structure, 4, 1996
6GG0
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BU of 6gg0 by Molmil
Cryo-EM structure of BK polyomavirus like particle in complex with single chain antibody ScFv41F17
Descriptor: Capsid protein VP1, Heavy chain, light chain
Authors:Srinivas, H.
Deposit date:2018-05-02
Release date:2019-03-06
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (4.24 Å)
Cite:Human Memory B Cells Harbor Diverse Cross-Neutralizing Antibodies against BK and JC Polyomaviruses.
Immunity, 50, 2019
1SIE
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BU of 1sie by Molmil
MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, POLYOMAVIRUS COAT PROTEIN VP1
Authors:Stehle, T, Harrison, S.C.
Deposit date:1995-12-12
Release date:1996-06-20
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments.
Structure, 4, 1996
6HKU
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BU of 6hku by Molmil
Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with sialylated precision glycooligomers
Descriptor: Capsid protein VP1, GLYCEROL, N-acetyl-alpha-neuraminic acid, ...
Authors:Rustmeier, N.H, Stehle, T.
Deposit date:2018-09-08
Release date:2019-03-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Divalent Sialylated Precision Glycooligomers Binding to Polyomaviruses and the Effect of Different Linkers.
Macromol Biosci, 19, 2019
1SVA
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BU of 1sva by Molmil
SIMIAN VIRUS 40
Descriptor: SIMIAN VIRUS 40
Authors:Stehle, T, Gamblin, S.J, Harrison, S.C.
Deposit date:1995-11-27
Release date:1996-06-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The structure of simian virus 40 refined at 3.1 A resolution.
Structure, 4, 1996
6HKV
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BU of 6hkv by Molmil
Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with sialylated precision glycooligomers
Descriptor: CHLORIDE ION, Capsid protein VP1, GLYCEROL, ...
Authors:Rustmeier, N.H, Stehle, T.
Deposit date:2018-09-08
Release date:2019-03-27
Last modified:2025-04-23
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Divalent Sialylated Precision Glycooligomers Binding to Polyomaviruses and the Effect of Different Linkers.
Macromol Biosci, 19, 2019
4FMJ
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BU of 4fmj by Molmil
Merkel cell polyomavirus VP1 in complex with GD1a oligosaccharide
Descriptor: CHLORIDE ION, GLYCEROL, N-acetyl-alpha-neuraminic acid, ...
Authors:Neu, U, Hengel, H, Stehle, T.
Deposit date:2012-06-17
Release date:2012-09-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of Merkel Cell Polyomavirus VP1 Complexes Define a Sialic Acid Binding Site Required for Infection.
Plos Pathog., 8, 2012
4FMG
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BU of 4fmg by Molmil
Merkel Cell Polyomavirus VP1 Unassembled Pentamer
Descriptor: CHLORIDE ION, GLYCEROL, VP1
Authors:Neu, U, Hengel, H, Stehle, T.
Deposit date:2012-06-17
Release date:2012-09-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of Merkel Cell Polyomavirus VP1 Complexes Define a Sialic Acid Binding Site Required for Infection.
Plos Pathog., 8, 2012
7K23
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Murine polyomavirus hexavalent capsomer with 8A7H5 Fab, subparticle reconstruction
Descriptor: 8A7H5 Fab heavy chain, 8A7H5 Fab light chain, Capsid protein VP1
Authors:Goetschius, D.J, Hafenstein, S.L.
Deposit date:2020-09-08
Release date:2020-10-07
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Antibody escape by polyomavirus capsid mutation facilitates neurovirulence.
Elife, 9, 2020

 

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