PDB Search results for query - Protein Data Bank Japan

PDB: 381 results

Bovine multidrug resistance protein 4 (MRP4) E1202Q mutant bound to ATP in MSP lipid nanodisc
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, ATP binding cassette subfamily C member 4, MAGNESIUM ION, ...
Authors:	Pourmal, S, Stroud, R.M.
Deposit date:	2023-05-19
Release date:	2024-01-17
Last modified:	2024-05-01
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	Structural basis of prostaglandin efflux by MRP4. Nat.Struct.Mol.Biol., 31, 2024

8SXA

Inward-facing wide conformation of bovine multidrug resistance protein 4 (MRP4) in MSP lipid nanodisc
Descriptor:	Multidrug resistance-associated protein 4
Authors:	Pourmal, S, Stroud, R.M.
Deposit date:	2023-05-20
Release date:	2024-01-17
Last modified:	2024-05-01
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	Structural basis of prostaglandin efflux by MRP4. Nat.Struct.Mol.Biol., 31, 2024

8TI1

Cryo-EM structure of a SUR1/Kir6.2-Q52R ATP-sensitive potassium channel in the presence of PIP2 in the open conformation
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, ATP-sensitive inward rectifier potassium channel 11, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, ...
Authors:	Driggers, C.M, Shyng, S.-L.
Deposit date:	2023-07-18
Release date:	2024-04-03
Method:	ELECTRON MICROSCOPY (2.9 Å)
Cite:	Structure of an open K ATP channel reveals tandem PIP 2 binding sites mediating the Kir6.2 and SUR1 regulatory interface. Nat Commun, 15, 2024

8TI2

Cryo-EM structure of a SUR1/Kir6.2-Q52R ATP-sensitive potassium channel in the presence of PIP2 in the open conformation
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, ATP-sensitive inward rectifier potassium channel 11, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, ...
Authors:	Driggers, C.M, Shyng, S.-L.
Deposit date:	2023-07-18
Release date:	2024-04-03
Method:	ELECTRON MICROSCOPY (3.28 Å)
Cite:	Structure of an open K ATP channel reveals tandem PIP 2 binding sites mediating the Kir6.2 and SUR1 regulatory interface. Nat Commun, 15, 2024

8SQL

Cleaved Ycf1p Monomer in the Beta Conformation
Descriptor:	Metal resistance protein YCF1, PHOSPHATIDYLETHANOLAMINE, Unknown peptide from Ycf1p R region
Authors:	Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:	2023-05-04
Release date:	2024-05-08
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	Cleaved Ycf1p Monomer in the Beta Conformation To Be Published

8SQM

Cleaved Ycf1p Monomer in the IFwide-alpha conformation
Descriptor:	(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate, Metal resistance protein YCF1, Unknown peptide from Ycf1p R region
Authors:	Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:	2023-05-04
Release date:	2024-05-08
Method:	ELECTRON MICROSCOPY (3.4 Å)
Cite:	Structure of a dimeric ABC transporter To Be Published

8SQ0

Cleaved Ycf1p Dimer in the IFwide-beta conformation
Descriptor:	(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate, 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE, Metal resistance protein YCF1, ...
Authors:	Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:	2023-05-04
Release date:	2024-05-08
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	Structure of a dimeric ABC transporter To Be Published

8T4H

Transporter associated with antigen processing (TAP) bound to the 8-mer peptide RRYQSTEL
Descriptor:	Antigen peptide transporter 1, Antigen peptide transporter 2, Synthetic 8-mer peptide
Authors:	Lee, J, Chen, J.
Deposit date:	2023-06-09
Release date:	2024-06-19
Method:	ELECTRON MICROSCOPY (3.8 Å)
Cite:	Transporter associated with antigen processing (TAP) bound to the 8-mer peptide RRYQSTEL To Be Published

8T46

Transporter associated with antigen processing (TAP) in the apo state
Descriptor:	Antigen peptide transporter 1, Antigen peptide transporter 2
Authors:	Lee, J, Oldham, M.L, Chen, J.
Deposit date:	2023-06-08
Release date:	2024-06-12
Method:	ELECTRON MICROSCOPY (3.6 Å)
Cite:	Principles of peptide selection by the transporter associated with antigen processing. Proc.Natl.Acad.Sci.USA, 121, 2024

8T4G

Transporter associated with antigen processing (TAP) bound to the 9-mer peptide QYDDAVYKL
Descriptor:	Antigen peptide transporter 1, Antigen peptide transporter 2, HLA-C4 specific peptide
Authors:	Lee, J, Oldham, M.L, Chen, J.
Deposit date:	2023-06-09
Release date:	2024-06-19
Method:	ELECTRON MICROSCOPY (3.5 Å)
Cite:	Transporter associated with antigen processing (TAP) bound to the 9-mer peptide QYDDAVYKL To Be Published

8T4F

Transporter associated with antigen processing (TAP) bound to the 9-mer peptide RRYQKSTEL
Descriptor:	Antigen peptide transporter 1, Antigen peptide transporter 2, Histone H3.3C peptide
Authors:	Lee, J, Oldham, M.L, Chen, J.
Deposit date:	2023-06-09
Release date:	2024-06-19
Method:	ELECTRON MICROSCOPY (3.5 Å)
Cite:	Transporter associated with antigen processing (TAP) bound to the 9-mer peptide RRYQKSTEL To Be Published

8T4I

Transporter associated with antigen processing (TAP) bound to the 7-mer peptide RRYSTEL
Descriptor:	Antigen peptide transporter 1, Antigen peptide transporter 2, Synthetic 7-mer peptide
Authors:	Lee, J, Oldham, M.L, Chen, J.
Deposit date:	2023-06-09
Release date:	2024-06-19
Method:	ELECTRON MICROSCOPY (5.1 Å)
Cite:	Transporter associated with antigen processing (TAP) bound to the 7-mer peptide RRYSTEL To Be Published

8T4J

Transporter associated with antigen processing (TAP) bound to the 14-mer peptide LPAVVGLSPGEQEY
Descriptor:	Antigen peptide transporter 1, Antigen peptide transporter 2, HLA-B35 specific peptide
Authors:	Lee, J, Oldham, M.L, Chen, J.
Deposit date:	2023-06-09
Release date:	2024-06-19
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	Transporter associated with antigen processing (TAP) bound to the 14-mer peptide LPAVVGLSPGEQEY To Be Published

8T4E

Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV
Descriptor:	Antigen peptide transporter 1, Antigen peptide transporter 2, Transframe peptide
Authors:	Lee, J, Oldham, M.L, Chen, J.
Deposit date:	2023-06-09
Release date:	2024-06-19
Method:	ELECTRON MICROSCOPY (3.5 Å)
Cite:	Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV To Be Published

7ZDR

IF(apo/as isolated) conformation of CydDC mutant (H85A.C) in AMP-PNP(CydD) bound state (Dataset-16)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.05 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDB

IF(heme/bound) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.35 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDG

IF(heme/confined) conformation of CydDC (Dataset-5)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, HEME B/C
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (2.77 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDS

IF(apo/as isolated) conformation of CydDC mutant (E500Q.C) (Dataset-18)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.26 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDV

IF(apo/as isolated) conformation of CydDC mutant (E500Q.C) in AMP-PNP(CydD) bound state (Dataset-20)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.05 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDF

IF(heme/confined) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (2.94 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDT

Occ(apo/return) conformation of CydDC mutant (E500Q.C) in ATP(CydC) bound state (Dataset-18)
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (2.71 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDE

IF(apo/as isolated) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, MAGNESIUM ION, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.17 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZEC

IF(heme/confined) conformation of CydDC in ATP(CydD) bound state (Dataset-15)
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-30
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.05 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDW

IF(heme/confined) conformation of CydDC mutant (E500Q.C) in AMP-PNP(CydD) bound state (Dataset-22)
Descriptor:	ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, HEME B/C, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.35 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

7ZDA

IF(apo/asym) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ...
Authors:	Wu, D, Safarian, S.
Deposit date:	2022-03-29
Release date:	2023-04-19
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.17 Å)
Cite:	Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nat.Chem.Biol., 19, 2023

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Total results:	381
Displayed results:	25
Sorted by:	Hit score (from highest)
Other DB:	PFam PF00664