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PDB: 20 results

7VFD
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BU of 7vfd by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.25 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
3SAM
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BU of 3sam by Molmil
Structure of D13, the scaffolding protein of vaccinia virus (mutant D513G)
Descriptor: FORMIC ACID, Rifampicin resistance protein
Authors:Coulibaly, F.
Deposit date:2011-06-03
Release date:2011-06-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Membrane remodeling by the double-barrel scaffolding protein of poxvirus.
Plos Pathog., 7, 2011
6BEB
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BU of 6beb by Molmil
Crystal structure of VACV D13 in complex with Rifamycin SV
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Scaffold protein D13, ...
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7VFE
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BU of 7vfe by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal polyhistidine tag
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.63 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
6BED
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BU of 6bed by Molmil
Crystal structure of VACV D13 in complex with Rifampicin
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, RIFAMPICIN, ...
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2YGB
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BU of 2ygb by Molmil
Structure of vaccinia virus D13 scaffolding protein
Descriptor: RIFAMPICIN RESISTANCE PROTEIN
Authors:Bahar, M.W, Graham, S.C, Stuart, D.I, Grimes, J.M.
Deposit date:2011-04-13
Release date:2011-07-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Insights Into the Evolution of a Complex Virus from the Crystal Structure of Vaccinia Virus D13.
Structure, 19, 2011
6BEI
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BU of 6bei by Molmil
Crystal structure of VACV D13 in its apo (unbound) form
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Scaffold protein D13
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8F65
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BU of 8f65 by Molmil
Crystal structure of VACV D13 in complex with BBL030900
Descriptor: 8-methoxyquinolin-4-amine, FORMIC ACID, Scaffold protein D13
Authors:Subedi, B.P, Garriga, D, Coulibaly, F.
Deposit date:2022-11-16
Release date:2023-12-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of scaffolidng protein D13 of Vaccinia Virus in complex with fragments inhibiting A17 binding.
To Be Published
6BEC
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BU of 6bec by Molmil
Crystal structure of VACV D13 in complex with Rifabutin
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, RIFABUTIN, ...
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BEH
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BU of 6beh by Molmil
Crystal structure of VACV D13 in complex with Rifapentine
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, RIFAPENTINE, ...
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2YGC
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BU of 2ygc by Molmil
Structure of vaccinia virus D13 scaffolding protein
Descriptor: RIFAMPICIN RESISTANCE PROTEIN
Authors:Bahar, M.W, Graham, S.C, Stuart, D.I, Grimes, J.M.
Deposit date:2011-04-13
Release date:2011-07-20
Last modified:2011-09-21
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Insights Into the Evolution of a Complex Virus from the Crystal Structure of Vaccinia Virus D13.
Structure, 19, 2011
8F47
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BU of 8f47 by Molmil
Crystal structure of VACV D13 in complex with STK69439
Descriptor: 6,8-dimethoxy-2-methylquinolin-4-amine, FORMIC ACID, Scaffold protein D13
Authors:Subedi, B.P, Garriga, D, Coulibaly, F.
Deposit date:2022-11-10
Release date:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of scaffolidng protein D13 of Vaccinia Virus in complex with fragments inhibiting A17 binding.
To Be Published
6BEG
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BU of 6beg by Molmil
Crystal structure of VACV D13 F486A mutant
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Scaffold protein D13
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BEE
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BU of 6bee by Molmil
Crystal structure of VACV D13 in complex with Rifaximin
Descriptor: (2S,16Z,18E,20S,21S,22R,23R,24R,25S,26R,27S,28E)-5,6,21,23-tetrahydroxy-27-methoxy-2,4,11,16,20,22,24,26-octamethyl-1,1 5-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)furo[2'',3'':7',8']naphtho[1',2':4,5]imidazo[1,2-a]pyridin-2 5-yl acetate, 1,2-ETHANEDIOL, FORMIC ACID, ...
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BEF
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BU of 6bef by Molmil
Crystal structure of VACV D13 in complex with 3-formyl rifamycin SV
Descriptor: (2S,12Z,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-8-formyl-5,6,9,17,19-pentahydroxy-23-methoxy-2,4,12,16,18,20,22-heptam ethyl-1,11-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-21-yl acetate, 1,2-ETHANEDIOL, FORMIC ACID, ...
Authors:Garriga, D, Accurso, C, Coulibaly, F.
Deposit date:2017-10-25
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3SAQ
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BU of 3saq by Molmil
Structure of D13, the scaffolding protein of vaccinia virus
Descriptor: Rifampicin resistance protein
Authors:Coulibaly, F.
Deposit date:2011-06-03
Release date:2011-06-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Membrane remodeling by the double-barrel scaffolding protein of poxvirus.
Plos Pathog., 7, 2011
7VFG
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BU of 7vfg by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer doublet
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
7VFH
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BU of 7vfh by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
7VFF
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BU of 7vff by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal 17 residue truncation
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
8ARH
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BU of 8arh by Molmil
In situ subtomogram average of Vaccinia virus (WR) D13 lattice, on immature virions
Descriptor: Scaffold protein D13
Authors:Calcraft, T, Hernandez-Gonzalez, M, Nans, A, Rosenthal, P.B, Way, M.
Deposit date:2022-08-16
Release date:2023-02-01
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (19.200001 Å)
Cite:A succession of two viral lattices drives vaccinia virus assembly.
Plos Biol., 21, 2023

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PDB entries from 2024-09-18

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