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PDB: 31 results

7SNS
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BU of 7sns by Molmil
1.55A Resolution Structure of NanoLuc Luciferase
Descriptor: ACETATE ION, Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:1.55A Resolution Structure of NanoLuc Luciferase
To be published
8AQ6
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NanoLuc luciferase with bound furimamide in surface allosteric site
Descriptor: CHLORIDE ION, GLYCEROL, N-(3-Benzyl-5-phenylpyrazin-2-yl)-2-(furan-2-yl)acetamide, ...
Authors:Nemergut, M, Marek, M.
Deposit date:2022-08-11
Release date:2023-08-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Illuminating the mechanism and allosteric behavior of NanoLuc luciferase.
Nat Commun, 14, 2023
7VSX
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BU of 7vsx by Molmil
Crystal structure of QL-nanoKAZ (Reverse mutant of nanoKAZ with L18Q and V27L)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, QLnK
Authors:Tomabechi, Y, Sekine, S, Shirouzu, M, Takamitsu, H, Satoshi, I.
Deposit date:2021-10-27
Release date:2022-08-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Reverse mutants of the catalytic 19 kDa mutant protein (nanoKAZ/nanoLuc) from Oplophorus luciferase with coelenterazine as preferred substrate.
Plos One, 17, 2022
7SNX
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BU of 7snx by Molmil
1.70A Resolution Structure of NanoBiT Complementation Reporter Complex of LgBit and SmBiT Subunits
Descriptor: GLYCEROL, Oplophorus-luciferin 2-monooxygenase catalytic subunit, Oplophorus-luciferin 2-monooxygenase catalytic subunit: C-terminal Peptide (11-mer)
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:1.70A Resolution Structure of NanoBiT Complementation Reporter Complex of LgBit and SmBiT Subunits
To be published
5B0U
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BU of 5b0u by Molmil
Crystal structure of the mutated 19 kDa protein of Oplophorus luciferase (nanoKAZ)
Descriptor: Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Tomabechi, Y, Ehara, H, Sekine, S.I, Shirouzu, M.
Deposit date:2015-11-04
Release date:2016-01-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of nanoKAZ: The mutated 19 kDa component of Oplophorus luciferase catalyzing the bioluminescent reaction with coelenterazine
Biochem.Biophys.Res.Commun., 470, 2016
7SNW
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BU of 7snw by Molmil
1.80A Resolution Structure of NanoLuc Luciferase with Bound Inhibitor PC 16026576
Descriptor: 2-(methoxycarbonyl)thiophene-3-sulfonic acid, CHLORIDE ION, GLYCEROL, ...
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1.80A Resolution Structure of NanoLuc Luciferase with Bound Inhibitor PC 16026576
To be published
5IBO
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BU of 5ibo by Molmil
1.95A resolution structure of NanoLuc luciferase
Descriptor: DECANOIC ACID, Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2016-02-22
Release date:2016-04-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:To be determined
To be published
8AQI
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BU of 8aqi by Molmil
NanoLuc luciferase with bound coelenteramide in surface allosteric site
Descriptor: CHLORIDE ION, N-[3-BENZYL-5-(4-HYDROXYPHENYL)PYRAZIN-2-YL]-2-(4-HYDROXYPHENYL)ACETAMIDE, NanoLuc luciferase, ...
Authors:Nemergut, M, Marek, M.
Deposit date:2022-08-12
Release date:2023-08-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Illuminating the mechanism and allosteric behavior of NanoLuc luciferase.
Nat Commun, 14, 2023
7SNR
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BU of 7snr by Molmil
2.00A Resolution Structure of NanoLuc Luciferase
Descriptor: ACETATE ION, CITRATE ANION, Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:2.00A Resolution Structure of NanoLuc Luciferase
To be published
6IGK
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BU of 6igk by Molmil
Crystal Structure of human ETB receptor in complex with Endothelin-3
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CITRIC ACID, Endothelin receptor type B,Endolysin,Endothelin receptor type B, ...
Authors:Shihoya, W, Izume, T, Inoue, A, Yamashita, K, Kadji, F.M.N, Hirata, K, Aoki, J, Nishizawa, T, Nureki, O.
Deposit date:2018-09-25
Release date:2018-11-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of human ETBreceptor provide mechanistic insight into receptor activation and partial activation.
Nat Commun, 9, 2018
7SNY
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BU of 7sny by Molmil
2.10A Resolution Structure of NanoBiT Complementation Reporter Large Subunit LgBiT
Descriptor: Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:2.10A Resolution Structure of NanoBiT Complementation Reporter Large Subunit LgBiT
To be published
7SNT
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BU of 7snt by Molmil
2.20A Resolution Structure of NanoLuc Luciferase with Bound Substrate Analog 3-methoxy-furimazine
Descriptor: (4S)-8-benzyl-2-[(furan-2-yl)methyl]-3-methoxy-6-phenylimidazo[1,2-a]pyrazine, Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Unch, J, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:2.20A Resolution Structure of NanoLuc Luciferase with Bound Substrate Analog 3-methoxy-furimazine
To be published
5X93
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BU of 5x93 by Molmil
Human endothelin receptor type-B in complex with antagonist K-8794
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 3-[6-[(4-tert-butylphenyl)sulfonylamino]-5-(2-methoxyphenoxy)-2-pyrimidin-2-yl-pyrimidin-4-yl]oxy-N-(2,6-dimethylphenyl)propanamide, CHOLESTEROL, ...
Authors:Shihoya, W, Nishizawa, T, Yamashita, K, Hirata, K, Okuta, A, Tani, K, Fujiyoshi, Y, Doi, T, Nureki, O.
Deposit date:2017-03-05
Release date:2017-08-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structures of endothelin ETB receptor bound to clinical antagonist bosentan and its analog
Nat. Struct. Mol. Biol., 24, 2017
5GLI
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BU of 5gli by Molmil
Human endothelin receptor type-B in the ligand-free form
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Endothelin Receptor Subtype-B, OLEIC ACID, ...
Authors:Shihoya, W, Nishizawa, T, Okuta, A, Tani, K, Fujiyoshi, Y, Dohmae, N, Nureki, O, Doi, T.
Deposit date:2016-07-11
Release date:2016-09-07
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Activation mechanism of endothelin ETB receptor by endothelin-1.
Nature, 537, 2016
6IGL
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BU of 6igl by Molmil
Crystal Structure of human ETB receptor in complex with IRL1620
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CITRIC ACID, Endothelin receptor type B,Endolysin,Endothelin receptor type B, ...
Authors:Shihoya, W, Izume, T, Inoue, A, Yamashita, K, kadji, F.M.N, Hirata, K, Aoki, J, Nishizawa, T, Nureki, O.
Deposit date:2018-09-25
Release date:2018-11-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of human ETBreceptor provide mechanistic insight into receptor activation and partial activation.
Nat Commun, 9, 2018
6K1Q
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BU of 6k1q by Molmil
Human endothelin receptor type-B in complex with inverse agonist IRL2500
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2~{S})-2-[[(2~{R})-2-[(3,5-dimethylphenyl)carbonyl-methyl-amino]-3-(4-phenylphenyl)propanoyl]amino]-3-(1~{H}-indol-3-yl)propanoic acid, Endothelin B receptor,Endolysin,Endothelin B receptor, ...
Authors:Nagiri, C, Shihoya, W, Nureki, O.
Deposit date:2019-05-11
Release date:2019-07-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of human endothelin ETBreceptor in complex with peptide inverse agonist IRL2500.
Commun Biol, 2, 2019
8AQH
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BU of 8aqh by Molmil
NanoLuc-Y94A luciferase mutant
Descriptor: NanoLuc luciferase
Authors:Nemergut, M, Marek, M.
Deposit date:2022-08-12
Release date:2023-08-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:Illuminating the mechanism and allosteric behavior of NanoLuc luciferase.
Nat Commun, 14, 2023
8IY5
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BU of 8iy5 by Molmil
ETB-Gi complex bound to endothelin-1
Descriptor: Endothelin type B receptor, Endothelin-1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Sano, F.K, Akasaka, H, Shihoya, W, Nureki, O.
Deposit date:2023-04-04
Release date:2023-08-16
Last modified:2023-12-06
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of the endothelin-1-ET B -G i complex.
Elife, 12, 2023
5GLH
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BU of 5glh by Molmil
Human endothelin receptor type-B in complex with ET-1
Descriptor: Endothelin Receptor Subtype-B, Peptide from Endothelin-1
Authors:Shihoya, W, Nishizawa, T, Okuta, A, Tani, K, Fujiyoshi, Y, Dohmae, N, Nureki, O, Doi, T.
Deposit date:2016-07-11
Release date:2016-09-07
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Activation mechanism of endothelin ETB receptor by endothelin-1.
Nature, 537, 2016
8JPN
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BU of 8jpn by Molmil
Cryo-EM structure of succinate receptor bound to cis-epoxysuccinic acid coupling to Gi
Descriptor: (2R,3S)-oxirane-2,3-dicarboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Wang, T.X, Tang, W.Q, Li, F.H, Wang, J.Y.
Deposit date:2023-06-12
Release date:2024-05-22
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Molecular activation and G protein coupling selectivity of human succinate receptor SUCR1.
Cell Res., 2024
8HNM
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BU of 8hnm by Molmil
CXCR3-DNGi complex activated by VUF11222
Descriptor: CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Jiao, H.Z, Hu, H.L.
Deposit date:2022-12-08
Release date:2023-11-29
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Structural insights into the activation and inhibition of CXC chemokine receptor 3.
Nat.Struct.Mol.Biol., 31, 2024
8HNL
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CXCR3-DNGi complex activated by PS372424
Descriptor: (3S)-N-[(2S)-5-carbamimidamido-1-(cyclohexylmethylamino)-1-oxidanylidene-pentan-2-yl]-2-(4-oxidanylidene-4-phenyl-butanoyl)-3,4-dihydro-1H-isoquinoline-3-carboxamide, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Jiao, H.Z, Hu, H.L.
Deposit date:2022-12-08
Release date:2023-11-29
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Structural insights into the activation and inhibition of CXC chemokine receptor 3.
Nat.Struct.Mol.Biol., 31, 2024
8HBD
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BU of 8hbd by Molmil
Cryo-EM structure of IRL1620-bound ETBR-Gi complex
Descriptor: Endothelin receptor type B,Endothelin receptor type B,Oplophorus-luciferin 2-monooxygenase catalytic subunit chimera, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Yuan, Q, Ji, Y, Jiang, Y, Duan, J, Xu, H.E.
Deposit date:2022-10-28
Release date:2023-03-22
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Structural basis of peptide recognition and activation of endothelin receptors.
Nat Commun, 14, 2023
6LRY
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BU of 6lry by Molmil
Crystal structure of human endothelin ETB receptor in complex with sarafotoxin S6b
Descriptor: Endothelin receptor type B,Endolysin,Endothelin receptor type B, Sarafotoxin-B
Authors:Izume, T, Miyauchi, H, Shihoya, W, Nureki, O.
Deposit date:2020-01-16
Release date:2020-02-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of human endothelin ETBreceptor in complex with sarafotoxin S6b.
Biochem.Biophys.Res.Commun., 528, 2020
8HCQ
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BU of 8hcq by Molmil
Cryo-EM structure of endothelin1-bound ETAR-Gq complex
Descriptor: Endothelin-1, Endothelin-1 receptor,Oplophorus-luciferin 2-monooxygenase catalytic subunit chimera, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Yuan, Q, Jiang, Y, Xu, H.E, Ji, Y, Duan, J.
Deposit date:2022-11-02
Release date:2023-03-22
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structural basis of peptide recognition and activation of endothelin receptors.
Nat Commun, 14, 2023

 

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