PDB: 35712 resultsInfo pagesStatus searchChemie searchBIRD

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1GTH	DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, TERNARY COMPLEX WITH NADPH AND 5-IODOURACIL Descriptor: (5S)-5-IODODIHYDRO-2,4(1H,3H)-PYRIMIDINEDIONE, 5-IODOURACIL, DIHYDROPYRIMIDINE DEHYDROGENASE, ... Authors: Dobritzsch, D, Ricagno, S, Schneider, G, Schnackerz, K.D, Lindqvist, Y. Deposit date: 2002-01-15 Release date: 2002-04-11 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Crystal structure of the productive ternary complex of dihydropyrimidine dehydrogenase with NADPH and 5-iodouracil. Implications for mechanism of inhibition and electron transfer. J. Biol. Chem., 277, 2002
3N1A	Crystal stricture of E145G/Y227F chitinase in complex with cyclo-(L-His-L-Pro) from Bacillus cereus NCTU2 Descriptor: CYCLO-(L-HISTIDINE-L-PROLINE) INHIBITOR, Chitinase A Authors: Hsieh, Y.-C, Wu, Y.-J, Wu, W.-G, Li, Y.-K, Chen, C.-J. Deposit date: 2010-05-15 Release date: 2010-08-04 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structures of bacillus cereus NCTU2 chitinase complexes with chitooligomers reveal novel substrate binding for catalysis: a chitinase without chitin-binding and insertion domains J.Biol.Chem., 285, 2010
5R9K	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N14246a in complex with MAP kinase p38-alpha Descriptor: 2,3-dihydro-1-benzoxepine-5-carboxylic acid, CHLORIDE ION, DIMETHYL SULFOXIDE, ... Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-04 Release date: 2020-07-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.498 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
4YTP	CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II BOUND WITH N-[(4-tert-butylphenyl)methyl]-2-(trifluoromethyl)benzamide Descriptor: FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ... Authors: Harada, S, Shiba, T, Sato, D, Yamamoto, A, Nagahama, M, Yone, A, Inaoka, D.K, Sakamoto, K, Inoue, M, Honma, T, Kita, K. Deposit date: 2015-03-18 Release date: 2015-08-05 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria Int J Mol Sci, 16, 2015
5RA2	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N09036b in complex with MAP kinase p38-alpha Descriptor: 1-(3-methylpyridin-2-yl)-1,4-diazepane, CHLORIDE ION, DIMETHYL SULFOXIDE, ... Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-04 Release date: 2020-07-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
4MLG	Structure of RS223-Beta-xylosidase Descriptor: Beta-xylosidase, CALCIUM ION, SULFATE ION Authors: Jordan, D, Braker, J, Wagschal, K, Lee, C, Dubrovska, I, Anderson, S, Wawrzak, Z. Deposit date: 2013-09-06 Release date: 2014-09-17 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of RS223-Beta-xylosidase To be Published
4MOF	Pyranose 2-oxidase H450G mutant with 2-fluorinated glucose Descriptor: 2-deoxy-2-fluoro-alpha-D-glucopyranose, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, Pyranose 2-oxidase Authors: Tan, T.C, Spadiut, O, Gandini, R, Haltrich, D, Divne, C. Deposit date: 2013-09-12 Release date: 2014-02-05 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural Basis for Binding of Fluorinated Glucose and Galactose to Trametes multicolor Pyranose 2-Oxidase Variants with Improved Galactose Conversion. Plos One, 9, 2014
1UAC	Crystal Structure of HYHEL-10 FV MUTANT SFSF Complexed with TURKEY WHITE LYSOZYME Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Kumagai, I, Nishimiya, Y, Kondo, H, Tsumoto, K. Deposit date: 2003-03-08 Release date: 2004-03-23 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10 J.BIOL.CHEM., 278, 2003
4MOT	Structure of Streptococcus pneumonia pare in complex with AZ13072886 Descriptor: 1-[4-(3-methylbutyl)-5-oxo-6-(pyridin-3-yl)-4,5-dihydro[1,3]thiazolo[5,4-b]pyridin-2-yl]-3-prop-2-en-1-ylurea, Topoisomerase IV subunit B Authors: Ogg, D, Boriack-Sjodin, P.A. Deposit date: 2013-09-12 Release date: 2013-11-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Thiazolopyridone ureas as DNA gyrase B inhibitors: Optimization of antitubercular activity and efficacy. Bioorg.Med.Chem.Lett., 24, 2014
1GWI	The 1.92 A structure of Streptomyces coelicolor A3(2) CYP154C1: A new monooxygenase that functionalizes macrolide ring systems Descriptor: CYTOCHROME P450 154C1, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION Authors: Podust, L.M, Kim, Y, Arase, M, Neely, B.A, Beck, B.J, Bach, H, Sherman, D.H, Lamb, D.C, Kelly, S.L, Waterman, M.R. Deposit date: 2002-03-15 Release date: 2003-01-29 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.92 Å) Cite: The 1.92 A Structure of Streptomyces Coelicolor A3(2) Cyp154C1: A New Monooxygenase that Functionalizes Macrolide Ring Systems J.Biol.Chem., 278, 2003
4YW1	Crystal Structure of Streptococcus pneumoniae NanC, complex with Neu5Ac and Neu5Ac2en following soaking with 3'SL Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Owen, C.D, Lukacik, P, Potter, J.A, Walsh, M, Taylor, G.L. Deposit date: 2015-03-20 Release date: 2015-09-23 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Streptococcus pneumoniae NanC: STRUCTURAL INSIGHTS INTO THE SPECIFICITY AND MECHANISM OF A SIALIDASE THAT PRODUCES A SIALIDASE INHIBITOR. J.Biol.Chem., 290, 2015
1UA2	Crystal Structure of Human CDK7 Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division protein kinase 7 Authors: Lolli, G, Lowe, E.D, Brown, N.R, Johnson, L.N. Deposit date: 2004-08-11 Release date: 2004-12-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.02 Å) Cite: The Crystal Structure of Human CDK7 and Its Protein Recognition Properties Structure, 12, 2004
5JGN	Spin-Labeled T4 Lysozyme Construct I9V1 Descriptor: CHLORIDE ION, Endolysin, PHOSPHATE ION, ... Authors: Balo, A.R, Feyrer, H, Ernst, O.P. Deposit date: 2016-04-20 Release date: 2017-02-15 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.534 Å) Cite: Toward Precise Interpretation of DEER-Based Distance Distributions: Insights from Structural Characterization of V1 Spin-Labeled Side Chains. Biochemistry, 55, 2016
4YX7	Complex of SpaO(SPOA1,2) and OrgB(APAR)::T4lysozyme fusion protein Descriptor: Oxygen-regulated invasion protein OrgB,Endolysin, Surface presentation of antigens protein SpaO Authors: Notti, R.Q, Stebbins, C.E. Deposit date: 2015-03-22 Release date: 2015-06-03 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.0007 Å) Cite: A common assembly module in injectisome and flagellar type III secretion sorting platforms. Nat Commun, 6, 2015
3N5F	Crystal Structure of L-N-carbamoylase from Geobacillus stearothermophilus CECT43 Descriptor: CACODYLATE ION, COBALT (II) ION, ISOPROPYL ALCOHOL, ... Authors: Garcia-Pino, A, Martinez-Rodriguez, S, Gavira, J.A. Deposit date: 2010-05-25 Release date: 2011-05-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Mutational and structural analysis of L-N-carbamoylase reveals new insights into a peptidase m20/m25/m40 family member. J.Bacteriol., 194, 2012
5JGR	Spin-Labeled T4 Lysozyme Construct K43V1 Descriptor: CHLORIDE ION, Endolysin, HEXANE-1,6-DIOL, ... Authors: Balo, A.R, Feyrer, H, Ernst, O.P. Deposit date: 2016-04-20 Release date: 2017-02-15 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.46 Å) Cite: Toward Precise Interpretation of DEER-Based Distance Distributions: Insights from Structural Characterization of V1 Spin-Labeled Side Chains. Biochemistry, 55, 2016
5JGX	Spin-Labeled T4 Lysozyme Construct V131V1 Descriptor: CHLORIDE ION, Endolysin, PHOSPHATE ION, ... Authors: Balo, A.R, Feyrer, H, Ernst, O.P. Deposit date: 2016-04-20 Release date: 2017-02-15 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.533 Å) Cite: Toward Precise Interpretation of DEER-Based Distance Distributions: Insights from Structural Characterization of V1 Spin-Labeled Side Chains. Biochemistry, 55, 2016
1UBZ	Crystal structure of Glu102-mutant human lysozyme doubly labeled with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine Descriptor: GLYCEROL, Lysozyme C, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Muraki, M, Harata, K. Deposit date: 2003-04-07 Release date: 2003-04-22 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: X-ray structural analysis of the ligand-recognition mechanism in the dual-affinity labeling of c-type lysozyme with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine J.MOL.RECOG., 16, 2003
4YSZ	Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with 2-iodo-N-[3-(1-methylethoxy)phenyl]benzamide Descriptor: 2-iodo-N-[3-(1-methylethoxy)phenyl]benzamide, Cytochrome b-large subunit, FE2/S2 (INORGANIC) CLUSTER, ... Authors: Harada, S, Shiba, T, Sato, D, Yamamoto, A, Nagahama, M, Yone, A, Inaoka, D.K, Sakamoto, K, Inoue, M, Honma, T, Kita, K. Deposit date: 2015-03-17 Release date: 2015-08-05 Last modified: 2020-02-05 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria Int J Mol Sci, 16, 2015
3N8Y	Structure of Aspirin Acetylated Cyclooxygenase-1 in Complex with Diclofenac Descriptor: 2-HYDROXYBENZOIC ACID, 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID, 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Sidhu, R.S. Deposit date: 2010-05-28 Release date: 2010-07-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Comparison of Cyclooxygenase-1 Crystal Structures: Cross-Talk between Monomers Comprising Cyclooxygenase-1 Homodimers Biochemistry, 49, 2010
3N8Z	Crystal Structure of Cyclooxygenase-1 in Complex with Flurbiprofen Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FLURBIPROFEN, ... Authors: Sidhu, R.S. Deposit date: 2010-05-28 Release date: 2010-07-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Comparison of Cyclooxygenase-1 Crystal Structures: Cross-Talk between Monomers Comprising Cyclooxygenase-1 Homodimers Biochemistry, 49, 2010
1TMX	Crystal structure of hydroxyquinol 1,2-dioxygenase from Nocardioides Simplex 3E Descriptor: 1-HEPTADECANOYL-2-TRIDECANOYL-3-GLYCEROL-PHOSPHONYL CHOLINE, BENZOIC ACID, CHLORIDE ION, ... Authors: Ferraroni, M, Travkin, V.M, Seifert, J, Schlomann, M, Golovleva, L, Scozzafava, A, Briganti, F. Deposit date: 2004-06-11 Release date: 2005-03-22 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Crystal structure of the hydroxyquinol 1,2-dioxygenase from Nocardioides simplex 3E, a key enzyme involved in polychlorinated aromatics biodegradation. J.Biol.Chem., 280, 2005
4YW3	Crystal Structure of Streptococcus pneumoniae NanC, complex with Neu5Ac and Neu5Ac2en following soaking with Neu5Ac2en Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, GLYCEROL, N-acetyl-alpha-neuraminic acid, ... Authors: Owen, C.D, Lukacik, P, Potter, J.A, Walsh, M, Taylor, G.L. Deposit date: 2015-03-20 Release date: 2015-09-23 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Streptococcus pneumoniae NanC: STRUCTURAL INSIGHTS INTO THE SPECIFICITY AND MECHANISM OF A SIALIDASE THAT PRODUCES A SIALIDASE INHIBITOR. J.Biol.Chem., 290, 2015
4YWN	Crystal structure of NADH-FMN oxidoreductase from Mycobacterium avium Descriptor: CITRATE ANION, NADH-fmn oxidoreductase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2015-03-20 Release date: 2015-04-01 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of NADH-FMN oxidoreductase from Mycobacterium avium To be Published
3OA8	Diheme SoxAX Descriptor: HEME C, SULFATE ION, SoxA, ... Authors: Maher, M.J. Deposit date: 2010-08-04 Release date: 2011-05-18 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Diheme SoxAX proteins - insights into structure and function of the active site To be Published

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