PDB: 1671 resultsInfo pagesStatus searchChemie searchBIRD

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7KZT	Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in intermediate state Descriptor: DNA (22-MER), E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2021-03-24 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZQ	Structure of the human Fanconi anaemia Core-ID complex Descriptor: E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, Fanconi anemia core complex-associated protein 20, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
7KZS	Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in open state Descriptor: DNA (25-MER), E3 ubiquitin-protein ligase FANCL, Fanconi anemia core complex-associated protein 100, ... Authors: Wang, S.L, Pavletich, N.P. Deposit date: 2020-12-10 Release date: 2021-03-10 Last modified: 2021-03-24 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structure of the FA core ubiquitin ligase closing the ID clamp on DNA. Nat.Struct.Mol.Biol., 28, 2021
5AKB	MutS in complex with the N-terminal domain of MutL - crystal form 1 Descriptor: DNA MISMATCH REPAIR PROTEIN MUTL, DNA MISMATCH REPAIR PROTEIN MUTS, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Authors: Groothuizen, F.S, Winkler, I, Cristovao, M, Fish, A, Winterwerp, H.H.K, Reumer, A, Marx, A.D, Hermans, N, Nicholls, R.A, Murshudov, G.N, Lebbink, J.H.G, Friedhoff, P, Sixma, T.K. Deposit date: 2015-03-03 Release date: 2015-07-22 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (4.71 Å) Cite: MutS/MutL crystal structure reveals that the MutS sliding clamp loads MutL onto DNA. Elife, 4, 2015
5AKD	MutS in complex with the N-terminal domain of MutL - crystal form 3 Descriptor: DNA MISMATCH REPAIR PROTEIN MUTL, DNA MISMATCH REPAIR PROTEIN MUTS, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Authors: Groothuizen, F.S, Winkler, I, Cristovao, M, Fish, A, Winterwerp, H.H.K, Reumer, A, Marx, A.D, Hermans, N, Nicholls, R.A, Murshudov, G.N, Lebbink, J.H.G, Friedhoff, P, Sixma, T.K. Deposit date: 2015-03-03 Release date: 2015-07-22 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (7.6 Å) Cite: MutS/MutL crystal structure reveals that the MutS sliding clamp loads MutL onto DNA. Elife, 4, 2015
5AKC	MutS in complex with the N-terminal domain of MutL - crystal form 2 Descriptor: DNA MISMATCH REPAIR PROTEIN MUTL, DNA MISMATCH REPAIR PROTEIN MUTS, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Authors: Groothuizen, F.S, Winkler, I, Cristovao, M, Fish, A, Winterwerp, H.H.K, Reumer, A, Marx, A.D, Hermans, N, Nicholls, R.A, Murshudov, G.N, Lebbink, J.H.G, Friedhoff, P, Sixma, T.K. Deposit date: 2015-03-03 Release date: 2015-07-22 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (6.6 Å) Cite: MutS/MutL crystal structure reveals that the MutS sliding clamp loads MutL onto DNA. Elife, 4, 2015
5D1L	Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (Y165A) Descriptor: DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase RNF25, OXALATE ION, ... Authors: Liang, Y.-H, Li, S, Weissman, A.M, Ji, X. Deposit date: 2015-08-04 Release date: 2015-10-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.618 Å) Cite: Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B. J.Biol.Chem., 290, 2015
5D1M	Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (P199A) Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase RNF25, ... Authors: Liang, Y.-H, Li, S, Weissman, A.M, Ji, X. Deposit date: 2015-08-04 Release date: 2015-10-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.581 Å) Cite: Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B. J.Biol.Chem., 290, 2015
5D1K	Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase RNF25, ... Authors: Liang, Y.-H, Li, S, Weissman, A.M, Ji, X. Deposit date: 2015-08-04 Release date: 2015-10-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B. J.Biol.Chem., 290, 2015
8IMQ	Adaptive mutation is mediated by MsyB via its interaction with nucleoid-associated proteins HU and beta-clamp Descriptor: Acidic protein MsyB Authors: Liu, B, Chen, H. Deposit date: 2023-03-07 Release date: 2024-03-13 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Adaptive mutation is mediated by MsyB via its interaction with nucleoid-associated proteins HU and beta-clamp To Be Published
3G65	Crystal Structure of the Human Rad9-Rad1-Hus1 DNA Damage Checkpoint Complex Descriptor: Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1, Checkpoint protein HUS1 Authors: Dore, A.S, Kilkenny, M.L, Rzechorzek, N.J, Pearl, L.H. Deposit date: 2009-02-06 Release date: 2009-05-26 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of the rad9-rad1-hus1 DNA damage checkpoint complex--implications for clamp loading and regulation. Mol.Cell, 34, 2009
5MA8	GFP-binding DARPin 3G124nc Descriptor: GA-binding protein subunit beta-1, Green fluorescent protein Authors: Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A. Deposit date: 2016-11-03 Release date: 2017-12-06 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity. Sci Rep, 7, 2017
5MA6	GFP-binding DARPin 3G124nc Descriptor: 1,2-ETHANEDIOL, 3G124nc, Green fluorescent protein, ... Authors: Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A. Deposit date: 2016-11-03 Release date: 2017-12-06 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity. Sci Rep, 7, 2017
5MAK	GFP-binding DARPin fusion gc_R7 Descriptor: CITRIC ACID, Green fluorescent protein, R7 Authors: Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A. Deposit date: 2016-11-03 Release date: 2017-11-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity. Sci Rep, 7, 2017
5MA3	GFP-binding DARPin fusion gc_R11 Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, R11 Authors: Hansen, S, Stueber, J, Ernst, P, Bojar, D, Batyuk, A, Plueckthun, A. Deposit date: 2016-11-03 Release date: 2017-11-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity. Sci Rep, 7, 2017
5MA4	GFP-binding DARPin fusion gc_K7 Descriptor: Green fluorescent protein, K7 Authors: Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A. Deposit date: 2016-11-03 Release date: 2017-11-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity. Sci Rep, 7, 2017
5MA5	GFP-binding DARPin fusion gc_K11 Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Green fluorescent protein, ... Authors: Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A. Deposit date: 2016-11-03 Release date: 2017-11-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity. Sci Rep, 7, 2017
1KGK	Direct Observation of a Cytosine Analog that Forms Five Hydrogen Bonds to Guanosine; Guanyl G-Clamp Descriptor: 5'-D(*GP*(GCK)P*GP*TP*AP*TP*AP*CP*GP*C)-3', METHOXY-ETHOXYL, SPERMINE (FULLY PROTONATED FORM) Authors: Wilds, C.J, Maier, M.A, Tereshko, V, Manoharan, M, Egli, M. Deposit date: 2001-11-27 Release date: 2001-12-21 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1 Å) Cite: Direct Observation of a Cytosine Analogue that Forms Five Hydrogen Bonds to Guanosine: Guanidino G-Clamp Angew.Chem.Int.Ed.Engl., 41, 2002
1T6L	Crystal Structure of the Human Cytomegalovirus DNA Polymerase Subunit, UL44 Descriptor: DNA polymerase processivity factor Authors: Appleton, B.A, Loregian, A, Filman, D.J, Coen, D.M, Hogle, J.M. Deposit date: 2004-05-06 Release date: 2004-08-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.85 Å) Cite: The Cytomegalovirus DNA Polymerase Subunit UL44 Forms a C Clamp-Shaped Dimer. Mol.Cell, 15, 2004
8DQW	Open state of Rad24-RFC:9-1-1 bound to a 5' ss/dsDNA junction Descriptor: DDC1 isoform 1, DNA (5'-D(P*CP*GP*TP*CP*CP*CP*TP*TP*CP*C)-3'), DNA (50-MER), ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-17 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
5OHQ	Crystal structure of the KOW6-KOW7 domain of human DSIF Descriptor: CHLORIDE ION, SODIUM ION, Transcription elongation factor SPT5 Authors: Bernecky, C, Plitzko, J.M, Cramer, P. Deposit date: 2017-07-17 Release date: 2017-09-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.098 Å) Cite: Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
5OIK	Structure of an RNA polymerase II-DSIF transcription elongation complex Descriptor: DNA (43-MER), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Bernecky, C, Plitzko, J.M, Cramer, P. Deposit date: 2017-07-18 Release date: 2017-09-13 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
5OHO	Crystal structure of the KOWx-KOW4 domain of human DSIF Descriptor: CHLORIDE ION, GLYCEROL, Transcription elongation factor SPT5 Authors: Bernecky, C, Plitzko, J.M, Cramer, P. Deposit date: 2017-07-17 Release date: 2017-09-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.601 Å) Cite: Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
8A2Q	Structure of the DNA-bound FANCD2-FANCI complex containing phosphomimetic FANCI Descriptor: DNA (29-MER), FANCD2, Fanconi anemia complementation group I Authors: Passmore, L.A, Sijacki, T, Alcon, P. Deposit date: 2022-06-06 Release date: 2022-09-07 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (3.53 Å) Cite: The DNA-damage kinase ATR activates the FANCD2-FANCI clamp by priming it for ubiquitination. Nat.Struct.Mol.Biol., 29, 2022
3CH8	The crystal structure of PDZ-Fibronectin fusion protein Descriptor: C-terminal octapeptide from protein ARVCF, MAGNESIUM ION, fusion protein PDZ-Fibronectin,Fibronectin Authors: Makabe, K, Huang, J, Koide, A, Koide, S. Deposit date: 2008-03-08 Release date: 2009-03-31 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for exquisite specificity of affinity clamps, synthetic binding proteins generated through directed domain-interface evolution. J.Mol.Biol., 392, 2009

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