PDB: 1104 resultsInfo pagesStatus searchChemie searchBIRD

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1YJ2	Cyclized, non-dehydrated post-translational product for S65A Y66S H148G GFP variant Descriptor: 1,2-ETHANEDIOL, Green Fluorescent Protein, MAGNESIUM ION Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2005-01-13 Release date: 2005-02-15 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry. Biochemistry, 44, 2005
5DTZ	Crystal structure of rsFolder in the fluorescent on-state Descriptor: DI(HYDROXYETHYL)ETHER, Green fluorescent protein Authors: El Khatib, M, Colletier, J.P, Adam, V. Deposit date: 2015-09-18 Release date: 2016-01-27 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Rational design of ultrastable and reversibly photoswitchable fluorescent proteins for super-resolution imaging of the bacterial periplasm. Sci Rep, 6, 2016
6GP0	Structure of mEos4b in the red fluorescent state Descriptor: Green to red photoconvertible GFP-like protein EosFP Authors: De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D. Deposit date: 2018-06-04 Release date: 2019-05-22 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM. Nat.Methods, 16, 2019
1S6Z	Enhanced Green Fluorescent Protein Containing the Y66L Substitution Descriptor: CHLORIDE ION, green fluorescent protein Authors: Rosenow, M.A, Huffman, H.A, Phail, M.E, Wachter, R.M. Deposit date: 2004-01-28 Release date: 2004-05-04 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: The Crystal Structure of the Y66L Variant of Green Fluorescent Protein Supports a Cyclization-Oxidation-Dehydration Mechanism for Chromophore Maturation(,). Biochemistry, 43, 2004
6G7P	Trichodesmium Tery_3377 (IdiA) (FutA) with iron and water ligands. Descriptor: CHLORIDE ION, Extracellular solute-binding protein, family 1, ... Authors: Machelett, M.M, Tews, I. Deposit date: 2018-04-06 Release date: 2018-09-12 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural and functional characterization of IdiA/FutA (Tery_3377), an iron-binding protein from the ocean diazotrophTrichodesmium erythraeum. J. Biol. Chem., 293, 2018
1KYR	Crystal Structure of a Cu-bound Green Fluorescent Protein Zn Biosensor Descriptor: COPPER (II) ION, Green Fluorescent Protein, MAGNESIUM ION Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2002-02-05 Release date: 2002-04-10 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural chemistry of a green fluorescent protein Zn biosensor. J.Am.Chem.Soc., 124, 2002
5LU3	The Structure of Spirochaeta thermophila CBM64 Descriptor: 3,6,9,12,15-pentaoxaoctadecan-17-amine, 4-oxobutanoic acid, CALCIUM ION, ... Authors: Correia, M.A.S, Romao, M.J, Carvalho, A.L. Deposit date: 2016-09-07 Release date: 2017-02-15 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Stability and Ligand Promiscuity of Type A Carbohydrate-binding Modules Are Illustrated by the Structure of Spirochaeta thermophila StCBM64C. J. Biol. Chem., 292, 2017
4P1Q	GREEN FLUORESCENT PROTEIN E222H VARIANT Descriptor: Green fluorescent protein, SODIUM ION Authors: Klein, M, Carius, Y, Auerbach, D, Franz, S, Jung, G, Lancaster, C.R.D. Deposit date: 2014-02-27 Release date: 2014-07-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Replacement of Highly Conserved E222 by the Photostable Non-photoconvertible Histidine in GFP. Chembiochem, 15, 2014
6QUH	GHK tagged GFP variant crystal form II at 1.34A wavelength Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, COPPER (II) ION, ... Authors: Huyton, T, Gorlich, D. Deposit date: 2019-02-27 Release date: 2020-05-27 Last modified: 2022-12-07 Method: X-RAY DIFFRACTION (1.5 Å) Cite: The copper(II)-binding tripeptide GHK, a valuable crystallization and phasing tag for macromolecular crystallography. Acta Crystallogr D Struct Biol, 76, 2020
1JBZ	CRYSTAL STRUCTURE ANALYSIS OF A DUAL-WAVELENGTH EMISSION GREEN FLUORESCENT PROTEIN VARIANT AT HIGH PH Descriptor: 1,2-ETHANEDIOL, GREEN FLUORESCENT PROTEIN, MAGNESIUM ION Authors: Hanson, G.T, McAnaney, T.B, Park, E.S, Rendell, M.E.P, Yarbrough, D.K, Chu, S, Xi, L, Boxer, S.G, Montrose, M.H, Remington, S.J. Deposit date: 2001-06-07 Release date: 2003-01-07 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Green Fluorescent Protein Variants as Ratiometric Dual Emission pH Sensors. 1. Structural Characterization and Preliminary Application. Biochemistry, 41, 2002
3DQO	Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 2: Structure 2 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
3DPX	Structure of the Yellow Fluorescent Protein Citrine Frozen at 5000 Atmospheres: Structure 26 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
3DQ5	Structure of the Yellow Fluorescent Protein Citrine Frozen at 1960 Atmospheres: Structure 19 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
6UN7	Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-OMeY); ih circular permutant (50-51) Descriptor: Green fluorescent protein Authors: Lin, C.-Y, Boxer, S.G. Deposit date: 2019-10-10 Release date: 2020-10-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems. J.Phys.Chem.B, 124, 2020
1Z1Q	Y66L Variant of Enhanced Green Fluorescent Protein with 374-nm Absorbing Chromophore Descriptor: Green Fluorescent Protein, SODIUM ION Authors: Rosenow, M.A, Patel, H.N, Wachter, R.M. Deposit date: 2005-03-04 Release date: 2005-06-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Oxidative Chemistry in the GFP Active Site Leads to Covalent Cross-Linking of a Modified Leucine Side Chain with a Histidine Imidazole: Implications for the Mechanism of Chromophore Formation. Biochemistry, 44, 2005
5J2O	Crystal structure of the cyan fluorescence protein Cerulean S175G mutant Descriptor: Green fluorescent protein Authors: Park, S.-W, Kang, S, Yoon, T.-S. Deposit date: 2016-03-29 Release date: 2016-04-13 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal structure of the cyan fluorescent protein Cerulean-S175G Acta Crystallogr.,Sect.F, 72, 2016
3KCS	Crystal structure of PAmCherry1 in the dark state Descriptor: PAmCherry1 protein Authors: Malashkevich, V.N, Subach, F.V, Zencheck, W.D, Xiao, H, Filonov, G.S, Almo, S.C, Verkhusha, V.V. Deposit date: 2009-10-21 Release date: 2009-11-17 Last modified: 2018-01-24 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Photoactivation mechanism of PAmCherry based on crystal structures of the protein in the dark and fluorescent states. Proc.Natl.Acad.Sci.USA, 106, 2009
1QYF	Crystal structure of matured green fluorescent protein R96A variant Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, green-fluorescent protein Authors: Barondeau, D.P, Putnam, C.D, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2003-09-10 Release date: 2003-09-30 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures. Proc.Natl.Acad.Sci.Usa, 100, 2003
1YHH	Uncyclized precursor structure of S65A Y66S G67A GFP variant Descriptor: green fluorescent protein Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2005-01-07 Release date: 2005-02-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry. Biochemistry, 44, 2005
2QRF	Green Fluorescent Protein: Cyclized-only Intermediate of Chromophore Maturation in the Q183E variant Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, MAGNESIUM ION Authors: Wood, T.I, Barondeau, D.P, Hitomi, C, Tainer, J.A, Getzoff, E.D. Deposit date: 2007-07-28 Release date: 2009-04-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Green Fluorescent Protein Chromophore - Cyclized Intermediate To be Published
3CD9	Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments Descriptor: Green fluorescent protein Authors: Lohman, J.R. Deposit date: 2008-02-26 Release date: 2008-08-19 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (1.502 Å) Cite: Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments Biochemistry, 47, 2008
6GP1	Structure of mEos4b in the red long-lived dark state Descriptor: Green to red photoconvertible GFP-like protein EosFP Authors: De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D. Deposit date: 2018-06-04 Release date: 2019-05-22 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.504 Å) Cite: Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM. Nat.Methods, 16, 2019
6HOJ	Structure of Beclin1 LIR motif bound to GABARAP Descriptor: 1,2-ETHANEDIOL, Beclin-1,Gamma-aminobutyric acid receptor-associated protein, SULFATE ION Authors: Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T. Deposit date: 2018-09-17 Release date: 2019-02-27 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy, 15, 2019
7Z7O	Structure of the fluorescent protein NeonCyan0.95 at pH 7.5 Descriptor: NeonCyan0.95 Authors: Clavel, D, Dupuy, J, Royant, A. Deposit date: 2022-03-16 Release date: 2022-05-04 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Cyan fluorescent proteins derived from mNeonGreen. Protein Eng.Des.Sel., 35, 2022
5OQ9	XFEL structure of the off state of a reversibly photoswitching fluorescent protein determined using the droplet on demand injection method Descriptor: Green to red photoconvertible GFP-like protein EosFP Authors: Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J. Deposit date: 2017-08-11 Release date: 2017-12-06 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.51 Å) Cite: X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature. Int J Mol Sci, 18, 2017

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