PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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4X0P	Ternary complex of human DNA polymerase theta C-terminal domain binding ddATP opposite a tetrahydrofuran AP site analog Descriptor: 2',3'-dideoxyadenosine triphosphate, CALCIUM ION, DNA (5'-D(*CP*GP*TP*TP*GP*AP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), ... Authors: Zahn, K.E, Doublie, S. Deposit date: 2014-11-21 Release date: 2015-03-18 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.911 Å) Cite: Human DNA polymerase theta grasps the primer terminus to mediate DNA repair. Nat.Struct.Mol.Biol., 22, 2015
6MB9	Ternary (neomycin/CoA) structure of AAC-IIIb Descriptor: Aac(3)-IIIb protein, COENZYME A, NEOMYCIN, ... Authors: Cuneo, M.J, Kumar, P. Deposit date: 2018-08-29 Release date: 2018-11-07 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Encoding of Promiscuity in an Aminoglycoside Acetyltransferase. J. Med. Chem., 61, 2018
7U8F	Ternary complex structure of Cereblon-DDB1 bound to IKZF2(ZF2) and the molecular glue DKY709 Descriptor: (3S)-3-[5-(1-benzylpiperidin-4-yl)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA damage-binding protein 1, ... Authors: Ma, X, Ornelas, E, Clifton, M.C. Deposit date: 2022-03-08 Release date: 2023-03-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Discovery and characterization of a selective IKZF2 glue degrader for cancer immunotherapy. Cell Chem Biol, 30, 2023
7UTI	ALTERNATIVE MODELING OF TROPOMYOSIN IN HUMAN CARDIAC THIN FILAMENT IN THE CALCIUM BOUND STATE Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Rynkiewicz, M.J, Pavadai, E, Lehman, W. Deposit date: 2022-04-27 Release date: 2022-09-21 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Protein-Protein Docking Reveals Dynamic Interactions of Tropomyosin on Actin Filaments. Biophys J, 119, 2020
7UTL	ALTERNATIVE MODELING OF TROPOMYOSIN IN HUMAN CARDIAC THIN FILAMENT IN THE CALCIUM FREE STATE Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Rynkiewicz, M.J, Pavadai, E, Lehman, W. Deposit date: 2022-04-27 Release date: 2022-09-21 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: Protein-Protein Docking Reveals Dynamic Interactions of Tropomyosin on Actin Filaments. Biophys J, 119, 2020
8HR2	Ternary Crystal Complex Structure of RBD with NB1B5 and NB1C6 Descriptor: NB1B5, NB1C6, Spike protein S1 Authors: Sun, Z. Deposit date: 2022-12-14 Release date: 2023-08-16 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Structure basis of two nanobodies neutralizing SARS-CoV-2 Omicron variant by targeting ultra-conservative epitopes. J.Struct.Biol., 215, 2023
1OTM	Calcium-binding mutant of the internalin B LRR domain Descriptor: internalin B Authors: Marino, M, Copp, J, Dramsi, S, Chapman, T, van der Geer, P, Cossart, P, Ghosh, P. Deposit date: 2003-03-21 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Characterization of the calcium-binding sites of Listeria monocytogenes InlB Biochem.Biophys.Res.Commun., 316, 2004
6E90	Ternary complex of human glycerol 3-phosphate dehydrogenase Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,3-DIHYDROXYACETONEPHOSPHATE, CALCIUM ION, ... Authors: Mydy, L.S, Gulick, A.M. Deposit date: 2018-07-31 Release date: 2019-01-30 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Human Glycerol 3-Phosphate Dehydrogenase: X-ray Crystal Structures That Guide the Interpretation of Mutagenesis Studies. Biochemistry, 58, 2019
4QW8	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND D-DCTP Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QWA	TERNARY CRYSTAL STRUCTURES OF A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS in COMPLEX WITH DNA AND (-)3TC-DP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QW9	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND (-)FTC-PPNP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QWC	Ternary Crystal Structures of a Y-family DNA polymerase DPO4 from Sulfobus Solfataricus in Comples with DNA and L-DCDP Descriptor: 4-amino-1-{2-deoxy-5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one, ACETATE ION, CALCIUM ION, ... Authors: Vyas, R, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QWE	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND (-)FTC-DP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
3RFJ	Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering Descriptor: Internalin B, repeat modules, Variable lymphocyte receptor, ... Authors: Kim, H.J, Cheong, H.K, Jeon, Y.H. Deposit date: 2011-04-06 Release date: 2012-03-14 Last modified: 2017-08-16 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering Proc.Natl.Acad.Sci.USA, 109, 2012
4QWD	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND (-)3TC-PPNP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4X0Q	Ternary complex of human DNA polymerase theta C-terminal domain binding ddGTP opposite dCMP Descriptor: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*TP*CP*CP*AP*AP*TP*GP*AP*CP*AP*G)-3'), DNA (5'-D(P*CP*TP*GP*TP*CP*AP*TP*TP*G)-3'), ... Authors: Zahn, K.E, Doublie, S. Deposit date: 2014-11-22 Release date: 2015-03-18 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Human DNA polymerase theta grasps the primer terminus to mediate DNA repair. Nat.Struct.Mol.Biol., 22, 2015
3RFS	Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering Descriptor: Internalin B, repeat modules, Variable lymphocyte receptor B, ... Authors: Kim, H.J, Cheong, H.K, Jeon, Y.H. Deposit date: 2011-04-06 Release date: 2012-03-14 Last modified: 2017-08-16 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering Proc.Natl.Acad.Sci.USA, 109, 2012
2WQX	InlB321_4R: S199R, D200R, G206R, A227R, C242A mutant of the Listeria monocytogenes InlB internalin domain Descriptor: INTERNALIN B Authors: Niemann, H.H, Ferraris, D.M, Heinz, D.W. Deposit date: 2009-08-27 Release date: 2009-11-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Ligand-Mediated Dimerization of the met Receptor Tyrosine Kinase by the Bacterial Invasion Protein Inlb. J.Mol.Biol., 395, 2010
3RNA	Structure of the Toluene/o-Xylene Monooxygenase Hydroxylase T201S/I100W Double Mutant Descriptor: FE (III) ION, HYDROXIDE ION, Toluene o-xylene monooxygenase component Authors: Gucinski, G, Song, W.J, Lippard, S.J, Sazinsky, M.H. Deposit date: 2011-04-22 Release date: 2011-08-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Tracking a defined route for O2 migration in a dioxygen-activating diiron enzyme. Proc.Natl.Acad.Sci.USA, 108, 2011
7JW9	Ternary cocrystal structure of alkanesulfonate monooxygenase MsuD from Pseudomonas fluorescens Descriptor: Alkanesulfonate monooxygenase, FLAVIN MONONUCLEOTIDE, SODIUM ION, ... Authors: Liew, J.J.M, Dowling, D.P. Deposit date: 2020-08-25 Release date: 2021-05-26 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Structures of the alkanesulfonate monooxygenase MsuD provide insight into C-S bond cleavage, substrate scope, and an unexpected role for the tetramer. J.Biol.Chem., 297, 2021
2WQU	Internalin domain of Listeria monocytogenes InlB: triclinic crystal form Descriptor: GLYCEROL, INTERNALIN B, SULFATE ION Authors: Niemann, H.H, Heinz, D.W. Deposit date: 2009-08-27 Release date: 2009-11-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Ligand-Mediated Dimerization of the met Receptor Tyrosine Kinase by the Bacterial Invasion Protein Inlb. J.Mol.Biol., 395, 2010
4J2E	RB69 DNA Polymerase L415M Ternary Complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*G)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics. Nucleic Acids Res., 41, 2013
4J2A	RB69 DNA Polymerase L415A Ternary Complex Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics. Nucleic Acids Res., 41, 2013
4J2B	RB69 DNA Polymerase L415G Ternary Complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*T)-3'), ... Authors: Xia, S, Wang, J, Konigsberg, W.H. Deposit date: 2013-02-04 Release date: 2014-02-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics. Nucleic Acids Res., 41, 2013
1O0E	1.9 Angstrom Crystal Structure of a plant cysteine protease Ervatamin C Descriptor: Ervatamin C, THIOSULFATE Authors: Thakurta, P.G, Chakrabarti, C, Biswas, S, Dattagupta, J.K. Deposit date: 2003-02-21 Release date: 2004-03-02 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural Basis of the Unusual Stability and Substrate Specificity of Ervatamin C, a Plant Cysteine Protease from Ervatamia coronaria Biochemistry, 43, 2004

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