PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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7TO9	BRD3-BD1 in complex with RaPID linear peptide 2xAcK.4xE (diAcK.4xE) Descriptor: 2xAcK.4xE (diAcK.4xE), Bromodomain-containing protein 3, GLYCEROL Authors: Mackay, J.P, Low, J.K.K, Patel, K. Deposit date: 2022-01-23 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.6 Å) Cite: mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome. J.Biol.Chem., 299, 2023
7TO8	BRD3-BD1 in complex with RaPID linear peptide 2xAcK.1 (diAcK.1) Descriptor: 2xAcK.1 (diAcK.1), Bromodomain-containing protein 3, GLYCEROL Authors: Patel, K, Low, J.K.K, Mackay, J.P. Deposit date: 2022-01-23 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.5 Å) Cite: mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome. J.Biol.Chem., 299, 2023
7TOA	BRD3-BD1 in complex with RaPID linear peptide 3xAcK.1 (triAcK.1) Descriptor: 3xAcK.1 (triAcK.1), Bromodomain-containing protein 3, GLYCEROL Authors: Patel, K, Low, J.K.K, Mackay, J.P. Deposit date: 2022-01-23 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.41 Å) Cite: mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome. J.Biol.Chem., 299, 2023
7TO7	BRD3-BD1 in complex with RaPID linear peptide 1xAcK.4XE (monoAcK.4xE) Descriptor: 1xAcK.4xE (monoAcK.4xE), Bromodomain-containing protein 3, GLYCEROL Authors: Mackay, J.P, Low, J.K.K, Patel, K. Deposit date: 2022-01-23 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.93 Å) Cite: mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome. J.Biol.Chem., 299, 2023
3SI6	RB69 DNA Polymerase Triple Mutant (L561A/S565G/Y567A) Ternary Complex with dUpNpp and a Deoxy-terminated Primer in the presence of Mg2+ Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3', 5'-D(*TP*CP*AP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', ... Authors: Wang, M, Wang, J, Konigsberg, W.H. Deposit date: 2011-06-17 Release date: 2011-10-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural Insights into Complete Metal Ion Coordination from Ternary Complexes of B Family RB69 DNA Polymerase. Biochemistry, 50, 2011
3RWU	RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Difluorotoluene Nucleoside Descriptor: 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3', 5'-D(*TP*CP*GP*(DFT)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Xia, S, Konigsberg, W.H, Wang, J. Deposit date: 2011-05-09 Release date: 2011-06-29 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.33 Å) Cite: Hydrogen-Bonding Capability of a Templating Difluorotoluene Nucleotide Residue in an RB69 DNA Polymerase Ternary Complex. J.Am.Chem.Soc., 133, 2011
3S9H	RB69 DNA Polymerase Triple Mutant(L561A/S565G/Y567A) ternary complex with dUpNpp and a dideoxy-terminated primer in the presence of Ca2+ Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3', 5'-D(*TP*CP*AP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', ... Authors: Wang, M, Wang, J, Konigsberg, W.H. Deposit date: 2011-06-01 Release date: 2011-10-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural Insights into Complete Metal Ion Coordination from Ternary Complexes of B Family RB69 DNA Polymerase. Biochemistry, 50, 2011
3SNN	RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dCTP Opposite dG in the presence of Mg2+ Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3', 5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', ... Authors: Wang, M, Wang, J, Konigsberg, W.H. Deposit date: 2011-06-29 Release date: 2011-10-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural Insights into Complete Metal Ion Coordination from Ternary Complexes of B Family RB69 DNA Polymerase. Biochemistry, 50, 2011
3P2K	Structure of an antibiotic related Methyltransferase Descriptor: 16S rRNA methylase, S-ADENOSYLMETHIONINE Authors: Sivaraman, J, Husain, N. Deposit date: 2010-10-02 Release date: 2010-11-17 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural basis for the methylation of A1408 in 16S rRNA by a panaminoglycoside resistance methyltransferase NpmA from a clinical isolate and analysis of the NpmA interactions with the 30S ribosomal subunit. Nucleic Acids Res., 39, 2011
4IG6	Crystal structure of a tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum bound to S-adenosylhomocysteine Descriptor: CHLORIDE ION, S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine-N(1)-)-methyltransferase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2012-12-16 Release date: 2012-12-26 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of a tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum bound to S-adenosylhomocysteine TO BE PUBLISHED
1UU0	Histidinol-phosphate aminotransferase (HisC) from Thermotoga maritima (Apo-form) Descriptor: HISTIDINOL-PHOSPHATE AMINOTRANSFERASE, PHOSPHATE ION Authors: Vega, M.C, Fernandez, F.J, Lehmann, F, Wilmanns, M. Deposit date: 2003-12-12 Release date: 2004-05-13 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural Studies of the Catalytic Reaction Pathway of a Hyperthermophilic Histidinol-Phosphate Aminotransferase J.Biol.Chem., 279, 2004
1UU2	Histidinol-phosphate aminotransferase (HisC) from Thermotoga maritima (apo-form) Descriptor: 1,2-ETHANEDIOL, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, HISTIDINOL-PHOSPHATE AMINOTRANSFERASE Authors: Vega, M.C, Fernandez, F.J, Lehmann, F, Wilmanns, M. Deposit date: 2003-12-13 Release date: 2004-03-18 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural Studies of the Catalytic Reaction Pathway of a Hyperthermophilic Histidinol-Phosphate Aminotransferase J.Biol.Chem., 279, 2004
2CSC	Structure of ternary complexes of CITRATE SYNTHASE WITH D-AND L-MALATE: mechanistic implications Descriptor: CARBOXYMETHYL COENZYME *A, CITRATE SYNTHASE, D-MALATE Authors: Karpusas, M, Holland, D, Remington, S.J. Deposit date: 1990-05-07 Release date: 1991-04-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: 1.9-A structures of ternary complexes of citrate synthase with D- and L-malate: mechanistic implications. Biochemistry, 30, 1991
1UU1	Complex of Histidinol-phosphate aminotransferase (HisC) from Thermotoga maritima (Apo-form) Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, HISTIDINOL-PHOSPHATE AMINOTRANSFERASE, PHOSPHORIC ACID MONO-[2-AMINO-3-(3H-IMIDAZOL-4-YL)-PROPYL]ESTER Authors: Vega, M.C, Fernandez, F.J, Lehman, F, Wilmanns, M. Deposit date: 2003-12-12 Release date: 2004-03-18 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Structural Studies of the Catalytic Reaction Pathway of a Hyperthermophilic Histidinol-Phosphate Aminotransferase J.Biol.Chem., 279, 2004
2JMI	NMR solution structure of PHD finger fragment of Yeast Yng1 protein in free state Descriptor: Protein YNG1, ZINC ION Authors: Ilin, S, Taverna, S.D, Rogers, R.S, Tanny, J.C, Lavender, H, Li, H, Baker, L, Boyle, J, Blair, L.P, Chait, B.T, Patel, D.J, Aitchison, J.D, Tackett, A.J, Allis, C.D. Deposit date: 2006-11-15 Release date: 2007-07-03 Last modified: 2023-12-20 Method: SOLUTION NMR Cite: Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs Mol.Cell, 24, 2006
3SJJ	RB69 DNA Polymerase Triple Mutant (L561A/S565G/Y567A) Ternary Complex with dUpNpp and a Deoxy-terminated Primer in the presence of Mn2+ Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3', 5'-D(*TP*CP*AP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', ... Authors: Wang, M, Wang, J, Konigsberg, W.H. Deposit date: 2011-06-21 Release date: 2011-10-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Structural Insights into Complete Metal Ion Coordination from Ternary Complexes of B Family RB69 DNA Polymerase. Biochemistry, 50, 2011
3UIQ	RB69 DNA Polymerase Ternary Complex containing dUpNpp Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3', 5'-D(*TP*CP*GP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', ... Authors: Xia, S, Konigsberg, W.H, Wang, J. Deposit date: 2011-11-05 Release date: 2012-04-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.879 Å) Cite: Bidentate and tridentate metal-ion coordination states within ternary complexes of RB69 DNA polymerase. Protein Sci., 21, 2012
2YVL	Crystal structure of tRNA (m1A58) methyltransferase TrmI from Aquifex aeolicus Descriptor: Hypothetical protein, S-ADENOSYLMETHIONINE Authors: Yanagisawa, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-13 Release date: 2008-04-01 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of tRNA m(1)A58 methyltransferase TrmI from Aquifex aeolicus in complex with S-adenosyl-L-methionine. J Struct Funct Genomics, 15, 2014
1ZPH	Crystal structure analysis of the minor groove binding quinolinium quaternary salt SN 8315 complexed with CGCGAATTCGCG Descriptor: 1,6-DIMETHYL-4-(4-(4-(1-METHYLPYRIDINIUM-4-YLAMINO)PHENYLCARBAMOYL)PHENYLAMINO)QUINOLINIUM, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION Authors: Adams, A, Leong, C, Denny, W.A, Guss, J.M. Deposit date: 2005-05-16 Release date: 2005-10-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structures of two minor-groove-binding quinolinium quaternary salts complexed with d(CGCGAATTCGCG)(2) at 1.6 and 1.8 Angstrom resolution. Acta Crystallogr.,Sect.D, 61, 2005
6DFR	CRYSTAL STRUCTURES OF ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE. THE NADP+ HOLOENZYME AND THE FOLATE(DOT)NADP+ TERNARY COMPLEX. SUBSTRATE BINDING AND A MODEL FOR THE TRANSITION STATE Descriptor: CALCIUM ION, DIHYDROFOLATE REDUCTASE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Bystroff, C, Oatley, S.J, Kraut, J. Deposit date: 1988-10-21 Release date: 1990-07-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structures of Escherichia coli dihydrofolate reductase: the NADP+ holoenzyme and the folate.NADP+ ternary complex. Substrate binding and a model for the transition state. Biochemistry, 29, 1990
6CTS	PROPOSED MECHANISM FOR THE CONDENSATION REACTION OF CITRATE SYNTHASE. 1.9-ANGSTROMS STRUCTURE OF THE TERNARY COMPLEX WITH OXALOACETATE AND CARBOXYMETHYL COENZYME A Descriptor: CITRATE SYNTHASE, CITRYL-THIOETHER-COENZYME *A Authors: Karpusas, M, Branchaud, B, Remington, S.J. Deposit date: 1989-11-16 Release date: 1990-10-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Proposed mechanism for the condensation reaction of citrate synthase: 1.9-A structure of the ternary complex with oxaloacetate and carboxymethyl coenzyme A. Biochemistry, 29, 1990
3KTQ	CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), ... Authors: Li, Y, Waksman, G. Deposit date: 1998-07-28 Release date: 1999-01-13 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. EMBO J., 17, 1998
1YYZ	R-State AMP Complex Reveals Initial Steps of the Quaternary Transition of Fructose-1,6-bisphosphatase Descriptor: 6-O-phosphono-beta-D-fructofuranose, ADENOSINE MONOPHOSPHATE, Fructose-1,6-bisphosphatase, ... Authors: Iancu, C.V, Mukund, S, Fromm, H.J, Honzatko, R.B. Deposit date: 2005-02-25 Release date: 2005-03-15 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.85 Å) Cite: R-state AMP complex reveals initial steps of the quaternary transition of fructose-1,6-bisphosphatase. J.Biol.Chem., 280, 2005
1ZPI	Crystal structure analysis of the minor groove binding quinolinium quaternary salt SN 8224 complexed with CGCGAATTCGCG Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', 8-METHOXY-1-METHYL-4-(4-(4-(1-METHYLPYRIDINIUM-4-YLAMINO)PHENYLCARBAMOYL)PHENYLAMINO)QUINOLINIUM, MAGNESIUM ION Authors: Adams, A, Leong, C, Denny, W.A, Guss, J.M. Deposit date: 2005-05-16 Release date: 2005-10-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structures of two minor-groove-binding quinolinium quaternary salts complexed with d(CGCGAATTCGCG)(2) at 1.6 and 1.8 Angstrom resolution. Acta Crystallogr.,Sect.D, 61, 2005
1YXI	R-State AMP Complex Reveals Initial Steps of the Quaternary Transition of Fructose-1,6-bisphosphatase Descriptor: 6-O-phosphono-beta-D-fructofuranose, Fructose-1,6-bisphosphatase, MAGNESIUM ION, ... Authors: Iancu, C.V, Mukund, S, Fromm, H.J, Honzatko, R.B. Deposit date: 2005-02-21 Release date: 2005-03-15 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: R-state AMP complex reveals initial steps of the quaternary transition of fructose-1,6-bisphosphatase. J.Biol.Chem., 280, 2005

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