Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5JPR
DownloadVisualize
BU of 5jpr by Molmil
Neutron Structure of Compound II of Ascorbate Peroxidase
Descriptor: Ascorbate peroxidase, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Kwon, H, Blakeley, M.P, Raven, E.L, Moody, P.C.E.
Deposit date:2016-05-04
Release date:2016-12-21
Last modified:2024-05-01
Method:NEUTRON DIFFRACTION (1.806 Å), X-RAY DIFFRACTION
Cite:Direct visualization of a Fe(IV)-OH intermediate in a heme enzyme.
Nat Commun, 7, 2016
8GYF
DownloadVisualize
BU of 8gyf by Molmil
Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (K192Y) in jellyfish Cytaeis uchidae from Biortus
Descriptor: 1,2-ETHANEDIOL, staygold(K192Y)
Authors:Wu, J, Wang, F, Gui, W, Cheng, W, Yang, Y.
Deposit date:2022-09-22
Release date:2023-10-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a bright green fluorescent protein (StayGold) with single mutation (K192Y) in jellyfish Cytaeis uchidae from Biortus
To Be Published
5JQS
DownloadVisualize
BU of 5jqs by Molmil
Crystal structure of deubiquitinase MINDY-1 in complex with Ubiquitin
Descriptor: 1,4-DIETHYLENE DIOXIDE, CHLORIDE ION, Protein FAM63A, ...
Authors:Abdul Rehman, S.A, Kulathu, Y.
Deposit date:2016-05-05
Release date:2016-06-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:MINDY-1 Is a Member of an Evolutionarily Conserved and Structurally Distinct New Family of Deubiquitinating Enzymes.
Mol.Cell, 63, 2016
7XJ5
DownloadVisualize
BU of 7xj5 by Molmil
Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester
Descriptor: MANGANESE (II) ION, Reverse Transcriptase RNase H domain, ZINC ION, ...
Authors:Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T.
Deposit date:2022-04-15
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity.
J.Chem.Inf.Model., 62, 2022
8GLG
DownloadVisualize
BU of 8glg by Molmil
Crystal Structure of Human CD1b in Complex with Phosphatidylethanolamine C34:1
Descriptor: (1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, 1,2-ETHANEDIOL, Beta-2-microglobulin, ...
Authors:Shahine, A.
Deposit date:2023-03-22
Release date:2023-09-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:CD1 lipidomes reveal lipid-binding motifs and size-based antigen-display mechanisms.
Cell, 186, 2023
5JRD
DownloadVisualize
BU of 5jrd by Molmil
E. coli Hydrogenase-1 variant P508A
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ...
Authors:Carr, S.B, Phillips, S.E.V, Armstrong, F.A, Evans, R.M, Brooke, E.J, Islam, S.T.A.
Deposit date:2016-05-06
Release date:2017-03-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Importance of the Active Site "Canopy" Residues in an O2-Tolerant [NiFe]-Hydrogenase.
Biochemistry, 56, 2017
7XIS
DownloadVisualize
BU of 7xis by Molmil
Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester
Descriptor: (2-methoxy-4-methoxycarbonyl-phenyl) 5-nitrofuran-2-carboxylate, MANGANESE (II) ION, Reverse Transcriptase RNase H domain, ...
Authors:Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T.
Deposit date:2022-04-14
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity.
J.Chem.Inf.Model., 62, 2022
7XIU
DownloadVisualize
BU of 7xiu by Molmil
Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester
Descriptor: MANGANESE (II) ION, Reverse Transcriptase RNase H domain, ZINC ION, ...
Authors:Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T.
Deposit date:2022-04-14
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity.
J.Chem.Inf.Model., 62, 2022
5JPZ
DownloadVisualize
BU of 5jpz by Molmil
Crystal structure of HAT domain of human Squamous Cell Carcinoma Antigen Recognized By T Cells 3, SART3 (TIP110)
Descriptor: Squamous cell carcinoma antigen recognized by T-cells 3
Authors:Grazette, A, Harper, S, Emsley, J, Layfield, R, Dreveny, I.
Deposit date:2016-05-04
Release date:2016-05-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.045 Å)
Cite:unpublished
To Be Published
7XIT
DownloadVisualize
BU of 7xit by Molmil
Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester
Descriptor: MANGANESE (II) ION, Reverse Transcriptase RNase H domain, ZINC ION, ...
Authors:Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T.
Deposit date:2022-04-14
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity.
J.Chem.Inf.Model., 62, 2022
7XJ7
DownloadVisualize
BU of 7xj7 by Molmil
Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester
Descriptor: MANGANESE (II) ION, Reverse Transcriptase RNase H domain, ZINC ION, ...
Authors:Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T.
Deposit date:2022-04-15
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity.
J.Chem.Inf.Model., 62, 2022
5JQK
DownloadVisualize
BU of 5jqk by Molmil
The Xray Crystal Structure of P. falciparum Aminopeptidase P
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Peptidase, ...
Authors:Drinkwater, N, McGowan, S.
Deposit date:2016-05-05
Release date:2016-08-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure and substrate fingerprint of aminopeptidase P from Plasmodium falciparum.
Biochem.J., 473, 2016
7XJ4
DownloadVisualize
BU of 7xj4 by Molmil
Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester
Descriptor: MANGANESE (II) ION, Reverse Transcriptase RNase H domain, S-[5-[(E)-2-phenylethenyl]-1,3,4-oxadiazol-2-yl] 5-nitrothiophene-2-carbothioate, ...
Authors:Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T.
Deposit date:2022-04-15
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity.
J.Chem.Inf.Model., 62, 2022
8GXE
DownloadVisualize
BU of 8gxe by Molmil
PTPN21 FERM PTP complex
Descriptor: CHLORIDE ION, Tyrosine-protein phosphatase non-receptor type 21
Authors:Chen, L, Zheng, Y.Y, Zhou, C.
Deposit date:2022-09-19
Release date:2023-09-27
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural analysis of PTPN21 reveals a dominant-negative effect of the FERM domain on its phosphatase activity.
Sci Adv, 10, 2024
5JR6
DownloadVisualize
BU of 5jr6 by Molmil
The Xray Crystal Structure of P. falciparum Aminopeptidase P in Complex With Apstatin
Descriptor: Apstatin, MANGANESE (II) ION, PHOSPHATE ION, ...
Authors:Drinkwater, N, McGowan, S.
Deposit date:2016-05-05
Release date:2016-08-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and substrate fingerprint of aminopeptidase P from Plasmodium falciparum.
Biochem.J., 473, 2016
8GXV
DownloadVisualize
BU of 8gxv by Molmil
Structure of a bacterial serpin Choloropin derived from Cholorobium limicola
Descriptor: GLYCEROL, Proteinase inhibitor I4 serpin, ZINC ION
Authors:Zhou, A, Xu, J.
Deposit date:2022-09-21
Release date:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Climpin, a Novel Bacterial a Serpin inducing a Broad Range of Proteases and Regulated by Heparin and DNA.
To Be Published
8GY8
DownloadVisualize
BU of 8gy8 by Molmil
The structure of Bax1 from Pyrococcus furiosus
Descriptor: Putative translation initiation factor (IF-2 homolog), SULFATE ION
Authors:Wang, W.W, Liu, X.P.
Deposit date:2022-09-21
Release date:2023-09-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The structure of Bax1 from Pyrococcus furiosus
To Be Published
7X68
DownloadVisualize
BU of 7x68 by Molmil
CYS179 and CYS504 of CRMP2 were covalently binded by a Sesquiterpene lactone
Descriptor: (3aR,5S,8R,8aR,9aR)-5,8a-dimethyl-3-methylidene-8-oxidanyl-5,6,7,8,9,9a-hexahydro-3aH-benzo[f][1]benzofuran-2-one, Dihydropyrimidinase-related protein 2, SODIUM ION
Authors:Zhang, S.D, Ma, Y.F, Zhang, J.
Deposit date:2022-03-06
Release date:2022-05-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:CYS179 and CYS504 of CRMP2 were covalently binded by a Sesquiterpene lactone
To Be Published
5JOW
DownloadVisualize
BU of 5jow by Molmil
Bacteroides ovatus Xyloglucan PUL GH43A
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Non-reducing end alpha-L-arabinofuranosidase BoGH43A
Authors:Thompson, A.J, Hemsworth, G.R, Stepper, J, Sobala, L.F, Coyle, T, Larsbrink, J, Spadiut, O, Stubbs, K.A, Brumer, H, Davies, G.J.
Deposit date:2016-05-03
Release date:2016-08-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
Open Biology, 6, 2016
8G95
DownloadVisualize
BU of 8g95 by Molmil
Adenylation domain structure from NRPS-like Delta-Poly-L-Ornithine synthetase
Descriptor: 1,2-ETHANEDIOL, CACODYLATE ION, Dimodular nonribosomal peptide synthase
Authors:Patel, K.D, Gulick, A.M.
Deposit date:2023-02-21
Release date:2023-10-04
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and functional insights into delta-poly-L-ornithine polymer biosynthesis from Acinetobacter baumannii.
Commun Biol, 6, 2023
8G98
DownloadVisualize
BU of 8g98 by Molmil
Adenylation domain structure from NRPS-like Delta-Poly-L-Ornithine synthetase (L-Lysine bound)
Descriptor: Dimodular nonribosomal peptide synthase, GLYCEROL, LYSINE
Authors:Patel, K.D, Gulick, A.M.
Deposit date:2023-02-21
Release date:2023-10-04
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural and functional insights into delta-poly-L-ornithine polymer biosynthesis from Acinetobacter baumannii.
Commun Biol, 6, 2023
7XAY
DownloadVisualize
BU of 7xay by Molmil
Crystal structure of Hat1-Hat2-Asf1-H3-H4
Descriptor: COENZYME A, Histone H3, Histone H4, ...
Authors:Yue, Y, Yang, W.S, Xu, R.M.
Deposit date:2022-03-19
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Topography of histone H3-H4 interaction with the Hat1-Hat2 acetyltransferase complex.
Genes Dev., 36, 2022
8GEY
DownloadVisualize
BU of 8gey by Molmil
Crystal structure of human cellular retinol binding protein 1 in complex with 4-(hydroxymethyl)-1-[(4-methoxy-5,6,7,8-tetrahydronaphthalen-1-yl)sulfonyl]piperidin-4-ol
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(hydroxymethyl)-1-(4-methoxy-5,6,7,8-tetrahydronaphthalene-1-sulfonyl)piperidin-4-ol, Retinol-binding protein 1
Authors:Plau, J, Golczak, M.
Deposit date:2023-03-07
Release date:2023-10-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Discovery of Nonretinoid Inhibitors of CRBP1: Structural and Dynamic Insights for Ligand-Binding Mechanisms.
Acs Chem.Biol., 18, 2023
8GZB
DownloadVisualize
BU of 8gzb by Molmil
SARS-CoV-2 3CLpro
Descriptor: 1,2-ETHANEDIOL, 2-(4-chlorophenyl)-1,3,4-oxadiazole, 3C-like proteinase nsp5
Authors:Wang, F, Cen, Y.X, Tian, P.
Deposit date:2022-09-26
Release date:2023-09-27
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Nature-inspired catalytic asymmetric rearrangement of cyclopropylcarbinyl cation.
Sci Adv, 9, 2023
8GZI
DownloadVisualize
BU of 8gzi by Molmil
Crystal Structure of ApiI in complex with SAH
Descriptor: 1,2-ETHANEDIOL, ApiI, GLYCEROL, ...
Authors:Zhou, J.H, Lu, J.Y.
Deposit date:2022-09-27
Release date:2023-09-27
Method:X-RAY DIFFRACTION (2.12209678 Å)
Cite:Crystal Structure of ApiI in complex with SAH
To Be Published

222624

數據於2024-07-17公開中

PDB statisticsPDBj update infoContact PDBjnumon