PDB: 222415 resultsInfo pagesStatus searchChemie searchBIRD

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8AZC	Structure of SARS-CoV-2 NSP3 macrodomain in the apo form Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, CHLORIDE ION, Papain-like protease nsp3 Authors: Sander, S, Tidow, H, Fliegert, R, Sandmann, M. Deposit date: 2022-09-05 Release date: 2023-09-13 Method: X-RAY DIFFRACTION (0.93 Å) Cite: Structure of SARS-CoV-2 NSP3 macrodomain in the apo form To Be Published
8AMS	Complex of human TRIM2 RING domain, UBCH5C, and Ubiquitin Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, GLYCEROL, Polyubiquitin-C, ... Authors: Perez-Borrajero, C, Kotova, I, Murciano, B, Hennig, J. Deposit date: 2022-08-04 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and biophysical studies of TRIM2 and TRIM3 To Be Published
7XQ3	Crystal structure of the tetramer of thioredoxin domain containing-protein of Oncomelania hupensis(OhTRP14) Descriptor: Thioredoxin domain-containing protein 17 Authors: Wang, S.Q, Huang, S.Q. Deposit date: 2022-05-06 Release date: 2022-10-12 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Structural insights into the redox regulation of Oncomelania hupensis TRP14 and its potential role in the snail host response to parasite invasion. Fish Shellfish Immunol., 128, 2022
7XPW	Structure of OhTRP14 Descriptor: Thioredoxin domain-containing protein 17 Authors: Wang, S.Q, Huang, S.Q. Deposit date: 2022-05-05 Release date: 2022-10-12 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Structural insights into the redox regulation of Oncomelania hupensis TRP14 and its potential role in the snail host response to parasite invasion. Fish Shellfish Immunol., 128, 2022
6H86	Rebuilt and re-refined PDB entry 4R3Q: Crystal structure of SYCE3 Descriptor: Synaptonemal complex central element protein 3 Authors: Davies, O.R. Deposit date: 2018-08-02 Release date: 2019-05-08 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.901 Å) Cite: A molecular model for self-assembly of the synaptonemal complex protein SYCE3. J.Biol.Chem., 294, 2019
5UMO	STRUCTURE OF EXTRACELLULAR SIGNAL-REGULATED KINASE Descriptor: Mitogen-activated protein kinase 1, SULFATE ION Authors: CHLEBOWICZ, J, ZHANG, F, GOLDSMITH, E.J. Deposit date: 2017-01-27 Release date: 2017-03-01 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Atomic structure of the MAP kinase ERK2 at 2.3 A resolution. Nature, 367, 1994
5Z7B	Crystal structure of the VanR transcription factor in complex with vanillate Descriptor: 4-HYDROXY-3-METHOXYBENZOATE, PadR family transcriptional regulator Authors: Kwak, Y.M, Park, S.C, Yoon, S.I. Deposit date: 2018-01-28 Release date: 2018-08-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of the VanR transcription factor and the role of its unique alpha-helix in effector recognition. FEBS J., 285, 2018
1VHJ	Crystal structure of purine nucleoside phosphorylase Descriptor: purine nucleoside phosphorylase Authors: Structural GenomiX Deposit date: 2003-12-01 Release date: 2003-12-30 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Structural analysis of a set of proteins resulting from a bacterial genomics project Proteins, 60, 2005
1VHW	Crystal structure of purine nucleoside phosphorylase with adenosine Descriptor: ADENOSINE, purine nucleoside phosphorylase Authors: Structural GenomiX Deposit date: 2003-12-01 Release date: 2003-12-30 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Structural analysis of a set of proteins resulting from a bacterial genomics project Proteins, 60, 2005
5OR4	Crystal structure of Aspergillus oryzae catechol oxidase in deoxy-form Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, ... Authors: Hakulinen, N, Penttinen, L, Rutanen, C, Rouvinen, J. Deposit date: 2017-08-15 Release date: 2018-05-09 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.445 Å) Cite: A new crystal form of Aspergillus oryzae catechol oxidase and evaluation of copper site structures in coupled binuclear copper enzymes. PLoS ONE, 13, 2018
6A8M	N-terminal domain of FACT complex subunit SPT16 from Eremothecium gossypii (Ashbya gossypii) Descriptor: FACT complex subunit SPT16 Authors: Gaur, N.K, Are, V.N, Durani, V, Ghosh, B, Kumar, A, Kulkarni, K, Makde, R.D. Deposit date: 2018-07-09 Release date: 2018-08-15 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Evolutionary conservation of protein dynamics: insights from all-atom molecular dynamics simulations of 'peptidase' domain of Spt16. J.Biomol.Struct.Dyn., 2021
5ZT0	Crystal Structure of Protein Phosphate 1 Complexed with PP1 binding domain of GL Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Protein phosphatase 1 regulatory subunit 3B, ... Authors: Yu, J, Xiang, S. Deposit date: 2018-05-01 Release date: 2019-03-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.3204267 Å) Cite: Structural basis for protein phosphatase 1 recruitment by glycogen-targeting subunits FEBS J., 285, 2018
6AJD	Crystal structure of a monometallic dihydropyrimidinase from Pseudomonas aeruginosa PAO1 reveals no lysine carbamylation within the active site Descriptor: D-hydantoinase/dihydropyrimidinase, ZINC ION Authors: Huang, Y.H, Huang, C.Y. Deposit date: 2018-08-27 Release date: 2018-10-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.223 Å) Cite: Crystal structures of monometallic dihydropyrimidinase and the human dihydroorotase domain K1556A mutant reveal no lysine carbamylation within the active site Biochem. Biophys. Res. Commun., 505, 2018
6BCB	A Complex between PH Domain of p114RhoGEF and Activated RhoA Bound to a GTP Analog Descriptor: 1,2-ETHANEDIOL, 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, MAGNESIUM ION, ... Authors: Sternweis, P.C, Chen, Z. Deposit date: 2017-10-20 Release date: 2017-12-13 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.401 Å) Cite: Crystal structures of the PH domains from Lbc family of RhoGEFs bound to activated RhoA GTPase. Data Brief, 17, 2018
6B0D	An E. coli DPS protein from ferritin superfamily Descriptor: DNA protection during starvation protein, FORMIC ACID, SODIUM ION Authors: Rui, W, Ruslan, S, Ronan, K, Adam, J.S. Deposit date: 2017-09-14 Release date: 2018-09-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: SIMBAD: a sequence-independent molecular-replacement pipeline. Acta Crystallogr D Struct Biol, 74, 2018
6F6Z	Mouse Thymidylate Synthase Cocrystallized with N(4)OHdCMP and Soaked in Methylenetetrahydrofolate Descriptor: (2~{S})-2-[[4-[[(6~{R})-2-azanyl-4-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-pteridin-6-yl]methyl-methyl-amino]phenyl]carbonylamino]pentanedioic acid, 2'-deoxy-N-hydroxycytidine 5'-(dihydrogen phosphate), Thymidylate synthase Authors: Wilk, P, Jarmula, A, Maj, P, Rode, W. Deposit date: 2017-12-06 Release date: 2019-01-30 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.127 Å) Cite: Molecular Mechanism of Thymidylate Synthase Inhibition by N4-Hydroxy-dCMP in View of Spectrophotometric and Crystallographic Studies Int J Mol Sci, 22, 2021
6BCA	A Complex between PH Domain of LbcRhoGEF (AKAP-Lbc) and Activated RhoA Bound to a GTP Analog Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, A-kinase anchor protein 13, MAGNESIUM ION, ... Authors: Sternweis, P.C, Chen, Z. Deposit date: 2017-10-20 Release date: 2017-12-13 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.995 Å) Cite: Crystal structures of the PH domains from Lbc family of RhoGEFs bound to activated RhoA GTPase. Data Brief, 17, 2018
5PRC	PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS VIRIDIS (ATRAZINE COMPLEX) Descriptor: 15-cis-1,2-dihydroneurosporene, 2-CHLORO-4-ISOPROPYLAMINO-6-ETHYLAMINO -1,3,5-TRIAZINE, BACTERIOCHLOROPHYLL B, ... Authors: Lancaster, C.R.D, Michel, H. Deposit date: 1997-08-01 Release date: 1999-04-06 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Refined crystal structures of reaction centres from Rhodopseudomonas viridis in complexes with the herbicide atrazine and two chiral atrazine derivatives also lead to a new model of the bound carotenoid. J.Mol.Biol., 286, 1999
6B6M	Cyanase from Serratia proteamaculans Descriptor: Cyanate hydratase Authors: Xu, Y. Deposit date: 2017-10-02 Release date: 2017-10-25 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.91 Å) Cite: SIMBAD: a sequence-independent molecular-replacement pipeline. Acta Crystallogr D Struct Biol, 74, 2018
6G2X	Crystal structure of the p97 D2 domain in a helical split-washer conformation Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, ... Authors: Stach, L, Morgan, R.M.L, Freemont, P.S. Deposit date: 2018-03-23 Release date: 2019-04-10 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.078 Å) Cite: Crystal structure of the catalytic D2 domain of the AAA+ ATPase p97 reveals a putative helical split-washer-type mechanism for substrate unfolding. Febs Lett., 594, 2020
6G30	Crystal structure of the p97 D2 domain in a helical split-washer conformation Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, ... Authors: Stach, L, Morgan, R.M.L, Freemont, P.S. Deposit date: 2018-03-23 Release date: 2019-04-10 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.418 Å) Cite: Crystal structure of the catalytic D2 domain of the AAA+ ATPase p97 reveals a putative helical split-washer-type mechanism for substrate unfolding. Febs Lett., 594, 2020
6FTD	Deinococcus radiodurans BphP PAS-GAF H290T mutant Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, ACETATE ION, ... Authors: Edlund, P, Takala, H, Westenhoff, S, Ihalainen, J.A. Deposit date: 2018-02-21 Release date: 2018-07-18 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Coordination of the biliverdin D-ring in bacteriophytochromes. Phys Chem Chem Phys, 20, 2018
6G4C	Crystal structure of the omega transaminase from Pseudomonas jessenii in the apo form, crystallized from ammonium phosphate Descriptor: Aspartate aminotransferase family protein, PHOSPHATE ION Authors: Rozeboom, H.J, Janssen, D.B. Deposit date: 2018-03-27 Release date: 2019-04-10 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism. Febs J., 286, 2019
6GDX	Structure of CutA from Synechococcus elongatus PCC7942 complexed with 3 molecules of Bis-Tris Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Periplasmic divalent cation tolerance protein Authors: Tremino, L, Rubio, V. Deposit date: 2018-04-24 Release date: 2019-05-08 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.17 Å) Cite: Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role. Febs J., 2020
5O9W	Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with 2-oxoglutarate Descriptor: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, DI(HYDROXYETHYL)ETHER, ... Authors: Kluza, A, Niedzialkowska, E, Kurpiewska, K, Porebski, P.J, Borowski, T. Deposit date: 2017-06-20 Release date: 2018-02-14 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of thebaine 6-O-demethylase from the morphine biosynthesis pathway. J. Struct. Biol., 202, 2018

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