PDB: 98078 resultsInfo pagesStatus searchChemie searchBIRD

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4RM3	Crystal structure of a benzoate coenzyme A ligase with 2-Furoic acid Descriptor: 2-FUROIC ACID, Benzoate-coenzyme A ligase Authors: Strom, S, Nosrati, M, Thornburg, C, Walker, K.D, Geiger, J.H. Deposit date: 2014-10-18 Release date: 2015-09-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Kinetically and Crystallographically Guided Mutations of a Benzoate CoA Ligase (BadA) Elucidate Mechanism and Expand Substrate Permissivity. Biochemistry, 54, 2015
5D8D	Crystal structure of D-alanine-D-alanine ligase from Acinetobacter baumannii Descriptor: D-alanine--D-alanine ligase Authors: Huynh, K.H, Hong, M.K, Kang, L.W. Deposit date: 2015-08-17 Release date: 2016-08-17 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.19 Å) Cite: The crystal structure of the D-alanine-D-alanine ligase from Acinetobacter baumannii suggests a flexible conformational change in the central domain before nucleotide binding J. Microbiol., 53, 2015
4EAT	Crystal structure of a benzoate coenzyme A ligase Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, Benzoate-coenzyme A ligase, ... Authors: Geiger, J, Strom, S. Deposit date: 2012-03-22 Release date: 2013-03-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.798 Å) Cite: Kinetically and Crystallographically Guided Mutations of a Benzoate CoA Ligase (BadA) Elucidate Mechanism and Expand Substrate Permissivity. Biochemistry, 54, 2015
5DMX	Crystal structure of D-alanine-D-alanine ligase from Acinetobacter baumannii, space group p212121 Descriptor: D-alanine--D-alanine ligase Authors: Huynh, K.H, Hong, M.K, Kang, L.W. Deposit date: 2015-09-09 Release date: 2016-08-17 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.81 Å) Cite: The crystal structure of the D-alanine-D-alanine ligase from Acinetobacter baumannii suggests a flexible conformational change in the central domain before nucleotide binding J. Microbiol., 53, 2015
4RMN	Crystal structure of a benzoate coenzyme A ligase with 2-Thiophene Carboxylic acid Descriptor: Benzoate-coenzyme A ligase, GLYCEROL, THIOPHENE-2-CARBOXYLIC ACID Authors: Strom, S, Nosrati, M, Thornburg, C, Walker, K.D, Geiger, J.H. Deposit date: 2014-10-21 Release date: 2015-09-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.72 Å) Cite: Kinetically and Crystallographically Guided Mutations of a Benzoate CoA Ligase (BadA) Elucidate Mechanism and Expand Substrate Permissivity. Biochemistry, 54, 2015
3RQW	Crystal structure of acetylcholine bound to a prokaryotic pentameric ligand-gated ion channel, ELIC Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETYLCHOLINE, ELIC Pentameric Ligand Gated Ion Channel from Erwinia Chrysanthemi, ... Authors: Pan, J.J, Chen, Q, Yoshida, K, Cohen, A, Kong, X.P, Xu, Y, Tang, P. Deposit date: 2011-04-28 Release date: 2012-03-07 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.913 Å) Cite: Structure of the pentameric ligand-gated ion channel ELIC cocrystallized with its competitive antagonist acetylcholine. Nat Commun, 3, 2012
4CAV	Crystal structure of Aspergillus fumigatus N-myristoyl transferase in complex with myristoyl CoA and a benzofuran ligand R0-09-4879 Descriptor: 3-[[3-methyl-2-[[2,3,4-tris(fluoranyl)phenoxy]methyl]-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine, CHLORIDE ION, GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE, ... Authors: Robinson, D.A, Fang, W, Raimi, O.G, Blair, D.E, Harrison, J, Ruda, G.F, Lockhart, D.E.A, Torrie, L.S, Wyatt, P.G, Gilbert, I.H, Van Aalten, D.M.F. Deposit date: 2013-10-09 Release date: 2014-09-17 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.89 Å) Cite: N-Myristoyltransferase is a Cell Wall Target in Aspergillus Fumigatus. Acs Chem.Biol., 10, 2015
4RM2	Crystal structure of a benzoate coenzyme A ligase with 2-Fluoro benzoic acid Descriptor: 2-fluorobenzoic acid, Benzoate-coenzyme A ligase Authors: Strom, S, Nosrati, M, Thornburg, C, Walker, K.D, Geiger, J.H. Deposit date: 2014-10-18 Release date: 2015-09-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Kinetically and Crystallographically Guided Mutations of a Benzoate CoA Ligase (BadA) Elucidate Mechanism and Expand Substrate Permissivity. Biochemistry, 54, 2015
7JT8	Apo structure of a pseudomurein peptide ligase type E from Methanothermus fervidus Descriptor: MAGNESIUM ION, Mur ligase middle domain protein, SULFATE ION Authors: Carbone, V, Schofield, L.R, Sutherland-Smith, A.J, Ronimus, R.S, Subedi, B.P. Deposit date: 2020-08-17 Release date: 2021-09-01 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Structural characterisation of methanogen pseudomurein cell wall peptide ligases homologous to bacterial MurE/F murein peptide ligases. Microbiology (Reading, Engl.), 168, 2022
4CAX	Crystal structure of Aspergillus fumigatus N-myristoyl transferase in complex with myristoyl CoA and a pyrazole sulphonamide ligand (DDD85646) Descriptor: 2,6-dichloro-4-(2-piperazin-1-ylpyridin-4-yl)-N-(1,3,5-trimethyl-1H-pyrazol-4-yl)benzenesulfonamide, GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE, TETRADECANOYL-COA Authors: Raimi, O.G, Robinson, D.A, Fang, W, Blair, D.E, Harrison, J, Ruda, G.F, Lockhart, D.E.A, Torrie, L.S, Wyatt, P.G, Gilbert, I.H, Van Aalten, D.M.F. Deposit date: 2013-10-09 Release date: 2014-09-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.85 Å) Cite: N-Myristoyltransferase is a Cell Wall Target in Aspergillus Fumigatus. Acs Chem.Biol., 10, 2015
4TVY	Apo resorufin ligase Descriptor: 5-(3,7-dihydroxy-10H-phenoxazin-2-yl)pentanamide, Lipoate-protein ligase A Authors: Goldman, P.J, Drennan, C.L. Deposit date: 2014-06-28 Release date: 2014-10-22 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.151 Å) Cite: Computational design of a red fluorophore ligase for site-specific protein labeling in living cells. Proc.Natl.Acad.Sci.USA, 111, 2014
5TTE	Crystal Structure of an RBR E3 ubiquitin ligase in complex with an E2-Ub thioester intermediate mimic Descriptor: E3 ubiquitin-protein ligase ARIH1, Ubiquitin-conjugating enzyme E2 L3, ZINC ION, ... Authors: Yuan, L, Lv, Z, Olsen, S.K. Deposit date: 2016-11-03 Release date: 2017-08-23 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (3.501 Å) Cite: Structural insights into the mechanism and E2 specificity of the RBR E3 ubiquitin ligase HHARI. Nat Commun, 8, 2017
4TVW	Resorufin ligase with bound resorufin-AMP analog Descriptor: 5'-O-{[5-(7-hydroxy-3-oxo-3H-phenoxazin-2-yl)pentanoyl]sulfamoyl}adenosine, Lipoate-protein ligase A Authors: Goldman, P.J, Drennan, C.L. Deposit date: 2014-06-28 Release date: 2014-10-22 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.505 Å) Cite: Computational design of a red fluorophore ligase for site-specific protein labeling in living cells. Proc.Natl.Acad.Sci.USA, 111, 2014
3RQU	Crystal structure of a prokaryotic pentameric ligand-gated ion channel, ELIC Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ELIC Pentameric Ligand Gated Ion Channel from Erwinia Chrysanthemi, GLYCEROL Authors: Pan, J.J, Chen, Q, Yoshida, K, Cohen, A, Kong, X.P, Xu, Y, Tang, P. Deposit date: 2011-04-28 Release date: 2012-03-07 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.089 Å) Cite: Structure of the pentameric ligand-gated ion channel ELIC cocrystallized with its competitive antagonist acetylcholine. Nat Commun, 3, 2012
4LCD	Structure of an Rsp5xUbxSna3 complex: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3 Descriptor: E3 ubiquitin-protein ligase RSP5, Protein SNA3, Ubiquitin Authors: Kamadurai, H.B, Miller, D, Schulman, B.A. Deposit date: 2013-06-21 Release date: 2013-08-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3. Elife, 2, 2013
5ID8	Crystal structure of CGL1 from Crassostrea gigas, ligand free form (CGL1/FREE) Descriptor: Natterin-3 Authors: Unno, H. Deposit date: 2016-02-24 Release date: 2016-06-29 Last modified: 2025-04-09 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Mannose-Specific Lectin CGL1 from the Pacific Oyster Crassostrea gigas. Sci Rep, 6, 2016
7BVB	Crystal structure of UDP-N-acetylmuramic Acid L-alanine ligase (MurC) from Mycobacterium bovis in complex with UDP-N-acetylglucosamine Descriptor: UDP-N-acetylmuramate--L-alanine ligase, URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE, ZINC ION Authors: Seo, P.W, Kim, J.S. Deposit date: 2020-04-10 Release date: 2020-04-22 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.191 Å) Cite: Crystal structures of UDP-N-acetylmuramic acid L-alanine ligase (MurC) from Mycobacterium bovis with and without UDP-N-acetylglucosamine. Acta Crystallogr D Struct Biol, 77, 2021
7BVA	Crystal structure of UDP-N-acetylmuramic Acid L-alanine ligase (MurC) from Mycobacterium bovis Descriptor: UDP-N-acetylmuramate--L-alanine ligase, ZINC ION Authors: Seo, P.W, Kim, J.S. Deposit date: 2020-04-10 Release date: 2020-04-22 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.303 Å) Cite: Crystal structures of UDP-N-acetylmuramic acid L-alanine ligase (MurC) from Mycobacterium bovis with and without UDP-N-acetylglucosamine. Acta Crystallogr D Struct Biol, 77, 2021
7D9Y	DNA binding domain of human DNA Ligase IV mutant - A3V Descriptor: DNA ligase 4 Authors: Maddi, E.R, Raghavan, S.C, Natesh, R. Deposit date: 2020-10-14 Release date: 2021-02-24 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.76 Å) Cite: Hypomorphic mutations in human DNA ligase IV lead to compromised DNA binding efficiency, hydrophobicity and thermal stability. Protein Eng.Des.Sel., 34, 2021
4ISZ	RNA ligase RtcB in complex with GTP alphaS and Mn(II) Descriptor: GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ... Authors: Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T. Deposit date: 2013-01-17 Release date: 2013-04-10 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.303 Å) Cite: Structures of the Noncanonical RNA Ligase RtcB Reveal the Mechanism of Histidine Guanylylation. Biochemistry, 52, 2013
4ISJ	RNA Ligase RtcB in complex with Mn(II) Descriptor: MANGANESE (II) ION, SULFATE ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, ... Authors: Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T. Deposit date: 2013-01-16 Release date: 2013-03-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.344 Å) Cite: Structures of the Noncanonical RNA Ligase RtcB Reveal the Mechanism of Histidine Guanylylation. Biochemistry, 52, 2013
4IT0	Structure of the RNA ligase RtcB-GMP/Mn(II) complex Descriptor: GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ... Authors: Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T. Deposit date: 2013-01-17 Release date: 2013-03-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of the Noncanonical RNA Ligase RtcB Reveal the Mechanism of Histidine Guanylylation. Biochemistry, 52, 2013
7KR3	Human DNA Ligase 1(E346A/E592A) Bound to a bulged DNA substrate Descriptor: ACETATE ION, ADENOSINE MONOPHOSPHATE, DNA (5'-D(*AP*AP*TP*GP*TP*CP*TP*GP*CP*CP*CP*C)-3'), ... Authors: Tumbale, P.P, Williams, R.S. Deposit date: 2020-11-18 Release date: 2021-02-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.778 Å) Cite: High-fidelity DNA ligation enforces accurate Okazaki fragment maturation during DNA replication. Nat Commun, 12, 2021
6BK5	Inactive choanoflagellate E3 ubiquitin ligase Cbl TKB Descriptor: CALCIUM ION, Ubiquitin Ligase Cbl Authors: Amacher, J.F, Kuriyan, J. Deposit date: 2017-11-07 Release date: 2018-03-14 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.401 Å) Cite: Phosphorylation control of the ubiquitin ligase Cbl is conserved in choanoflagellates. Protein Sci., 27, 2018
2RSD	Solution structure of the plant homeodomain (PHD) of the E3 SUMO ligase Siz1 from rice Descriptor: E3 SUMO-protein ligase SIZ1, ZINC ION Authors: Shindo, H, Tsuchiya, W, Suzuki, R, Yamazaki, T. Deposit date: 2012-01-12 Release date: 2012-08-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: PHD finger of the SUMO ligase Siz/PIAS family in rice reveals specific binding for methylated histone H3 at lysine 4 and arginine 2 Febs Lett., 586, 2012

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