PDB: 97814 resultsInfo pagesStatus searchChemie searchBIRD

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5T62	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex Descriptor: 25S Ribosomal RNA, 5.8S Ribosomal RNA, 5S Ribosomal RNA, ... Authors: Malyutin, A.G, Musalgaonkar, S, Patchett, S, Frank, J, Johnson, A.W. Deposit date: 2016-09-01 Release date: 2017-02-08 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis. EMBO J., 36, 2017
5RC0	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library E06a Descriptor: (3-endo)-8-benzyl-8-azabicyclo[3.2.1]octan-3-ol, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2020-06-17 Method: X-RAY DIFFRACTION (1.03 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
5RCD	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library H03a Descriptor: ACETATE ION, DIMETHYL SULFOXIDE, Endothiapepsin, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2020-06-17 Method: X-RAY DIFFRACTION (1.02 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
8IP8	Wheat 80S ribosome stalled on AUG-Stop boron dependently Descriptor: 18S ribosomal RNA, 40S ribosomal protein eL8, 40S ribosomal protein eS1, ... Authors: Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T. Deposit date: 2023-03-14 Release date: 2024-02-21 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1. Nat.Chem.Biol., 20, 2024
8C7I	Crystal structure of the PS2 assembly factor Psb32 from the cyanobactium Thermosyncechococcus vestitus (formerly elongatus) Descriptor: Green fluorescent protein,Tll0404 protein Authors: Liauw, P, Gasper, R, Nowaczyk, M.M, Hofmann, E. Deposit date: 2023-01-16 Release date: 2024-01-31 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Cryo-EM analysis of a novel photosystem II assembly intermediate that binds Psb32 To Be Published
6MHQ	Structure of connexin-46 intercellular gap junction channel at 3.4 angstrom resolution by cryoEM Descriptor: Gap junction alpha-3 protein, connexin-46 Authors: Myers, J.B, Reichow, S.L. Deposit date: 2018-09-18 Release date: 2018-12-12 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure of native lens connexin 46/50 intercellular channels by cryo-EM. Nature, 564, 2018
6N8K	Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit Descriptor: 5.8S rRNA, 5S rRNA, 60S ribosomal export protein NMD3, ... Authors: Zhou, Y, Musalgaonkar, S, Johnson, A.W, Taylor, D.W. Deposit date: 2018-11-29 Release date: 2019-03-13 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome. Nat Commun, 10, 2019
6MHY	Structure of connexin-50 intercellular gap junction channel at 3.4 angstrom resolution by cryoEM Descriptor: Gap junction alpha-8 protein, connexin-50 Authors: Myers, J.B, Reichow, S.L. Deposit date: 2018-09-18 Release date: 2018-12-12 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure of native lens connexin 46/50 intercellular channels by cryo-EM. Nature, 564, 2018
5ABX	Complex of C. elegans eIF4E-3 with the 4E-binding protein Mextli and cap analog Descriptor: 4E-BINDING PROTEIN MEXTLI, 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ... Authors: Peter, D, Weichenrieder, O. Deposit date: 2015-08-09 Release date: 2015-09-02 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Mextli Proteins Use Both Canonical Bipartite and Novel Tripartite Binding Modes to Form Eif4E Complexes that Display Differential Sensitivity to 4E-BP Regulation Genes Dev., 29, 2015
5RBO	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library A07a Descriptor: (2-aminopyridin-3-yl)methanol, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (1.08 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
5RC2	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library E11b Descriptor: DIMETHYL SULFOXIDE, Endothiapepsin, GLYCEROL, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2020-06-17 Method: X-RAY DIFFRACTION (0.97 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
5RBU	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library D01a Descriptor: 2-[(4-methyl-1,3-thiazol-2-yl)methyl]pyridine, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (1.01 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
5RC9	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library G03b Descriptor: 3-ethoxybenzene-1-carboximidamide, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2020-06-17 Method: X-RAY DIFFRACTION (1.08 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
6N8O	Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit Descriptor: 5.8S rRNA, 5S rRNA, 60S ribosomal export protein NMD3, ... Authors: Zhou, Y, Musalgaonkar, S, Johnson, A.W, Taylor, D.W. Deposit date: 2018-11-29 Release date: 2019-03-13 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome. Nat Commun, 10, 2019
5RBP	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library B03a Descriptor: 2-[(1~{S})-1-azanylpropyl]phenol, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (1.05 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
5RC4	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library F04a Descriptor: ACETATE ION, DIMETHYL SULFOXIDE, Endothiapepsin, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2020-06-17 Method: X-RAY DIFFRACTION (1 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
6N8J	Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit Descriptor: 5.8S rRNA, 5S rRNA, 60S ribosomal protein L11-A, ... Authors: Zhou, Y, Musalgaonkar, S, Johnson, A.W, Taylor, D.W. Deposit date: 2018-11-29 Release date: 2019-03-13 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome. Nat Commun, 10, 2019
4V1A	Structure of the large subunit of the mammalian mitoribosome, part 2 of 2 Descriptor: MITORIBOSOMAL PROTEIN ML37, MRPL37, MITORIBOSOMAL PROTEIN ML38, ... Authors: Greber, B.J, Boehringer, D, Leibundgut, M, Bieri, P, Leitner, A, Schmitz, N, Aebersold, R, Ban, N. Deposit date: 2014-09-25 Release date: 2014-10-08 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: The Complete Structure of the Large Subunit of the Mammalian Mitochondrial Ribosome Nature, 515, 2014
5RBY	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library D11b Descriptor: 3-(1,3-thiazol-2-yl)propanoic acid, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2020-06-17 Method: X-RAY DIFFRACTION (1.1 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
5RCE	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library H05a Descriptor: 6-methyl-N~4~-[(pyridin-3-yl)methyl]pyrimidine-2,4-diamine, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2020-06-17 Method: X-RAY DIFFRACTION (1.05 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
5RBS	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library C08a Descriptor: (3S)-3-hydroxy-2-methyl-2,3-dihydro-1H-isoindol-1-one, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (1 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
5RC8	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library G02a Descriptor: ACETATE ION, DIMETHYL SULFOXIDE, Endothiapepsin, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2020-06-17 Method: X-RAY DIFFRACTION (1.04 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
5RC3	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library F03a Descriptor: ACETATE ION, DIMETHYL SULFOXIDE, Endothiapepsin, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2020-06-17 Method: X-RAY DIFFRACTION (0.98 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020
6N8L	Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit Descriptor: 5.8S rRNA, 5S rRNA, 60S ribosomal export protein NMD3, ... Authors: Zhou, Y, Musalgaonkar, S, Johnson, A.W, Taylor, D.W. Deposit date: 2018-11-29 Release date: 2019-03-13 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome. Nat Commun, 10, 2019
5RBW	PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library D06b Descriptor: (3-methoxyphenyl)(pyrrolidin-1-yl)methanone, DIMETHYL SULFOXIDE, Endothiapepsin, ... Authors: Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G. Deposit date: 2020-03-24 Release date: 2020-06-03 Last modified: 2020-06-17 Method: X-RAY DIFFRACTION (0.95 Å) Cite: F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening. Structure, 28, 2020

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