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7QR6	Stilbene dioxygenase (NOV1) from Novosphingobium aromaticivorans: Ser283Phe mutant Descriptor: Dioxygenase, FE (III) ION, OXYGEN MOLECULE Authors: Alvigini, L, Mattevi, A. Deposit date: 2022-01-10 Release date: 2022-08-10 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Rationally Guided Improvement of NOV1 Dioxygenase for the Conversion of Lignin-Derived Isoeugenol to Vanillin. Biochemistry, 62, 2023
5UUO	Crystal structure of SARO_2595 from Novosphingobium aromaticivorans Descriptor: 1,2-ETHANEDIOL, GLUTATHIONE, Glutathione S-transferase-like protein, ... Authors: Bingman, C.A, Kontur, W.S, Olmsted, C.N, Fox, B.G, Donohue, T.J. Deposit date: 2017-02-17 Release date: 2018-02-28 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Novosphingobium aromaticivoransuses a Nu-class glutathioneS-transferase as a glutathione lyase in breaking the beta-aryl ether bond of lignin. J. Biol. Chem., 293, 2018
6XY1	Crystal structure of a de novo designed parallel four-helix coiled coil, 4-KE-4. Descriptor: 4-KE-4 Authors: Edgell, C.L, Savery, N.J, Woolfson, D.N. Deposit date: 2020-01-29 Release date: 2020-03-18 Last modified: 2023-03-08 Method: X-RAY DIFFRACTION (1.5 Å) Cite: RobustDe Novo-Designed Homotetrameric Coiled Coils. Biochemistry, 59, 2020
6XY0	Crystal structure of a de novo designed parallel four-helix coiled coil, 3-EK-4 Descriptor: 3-EK-4 Authors: Edgell, C.L, Savery, N.J, Woolfson, D.N. Deposit date: 2020-01-29 Release date: 2020-03-18 Last modified: 2020-03-25 Method: X-RAY DIFFRACTION (1.11 Å) Cite: RobustDe Novo-Designed Homotetrameric Coiled Coils. Biochemistry, 59, 2020
7DNS	Crystal structure of domain-swapped dimer of H5_Fold-0 Elsa; de novo designed protein with an asymmetric all-alpha topology Descriptor: GLYCEROL, de novo designed protein Authors: Suzuki, K, Kobayashi, N, Murata, T, Sakuma, K, Kosugi, T, Koga, R, Koga, N. Deposit date: 2020-12-10 Release date: 2021-07-28 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.327 Å) Cite: Design of complicated all-alpha protein structures Nat.Struct.Mol.Biol., 2024
7S5B	Unbound State of a De novo designed Protein Binder to the Human Interleukin-7 Receptor Descriptor: Miniprotein Binder Authors: Walsh, S.T.R, Cao, L, Baker, D. Deposit date: 2021-09-10 Release date: 2022-05-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Design of protein-binding proteins from the target structure alone. Nature, 605, 2022
6EGO	Crystal Structure of a de Novo Three-stranded Coiled Coil Peptide Containing an Ala Residue in the Second Coordination Sphere of the Hg(II)S3 Binding Site Descriptor: Hg(II)(GRAND CoilSerL12AL16C)3-, MERCURY (II) ION, ZINC ION Authors: Ruckthong, L, Stuckey, J.A, Pecoraro, V.L. Deposit date: 2018-08-20 Release date: 2019-04-03 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.93 Å) Cite: How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation. Chemistry, 25, 2019
6EGM	Crystal Structure of a de novo Three-stranded Coiled Coil Peptide Containing D-Leu in a d-site Position of a Tris-thiolate Binding Site Descriptor: Apo-(GRAND CoilSerL16CL19(DLE))3, ZINC ION Authors: Ruckthong, L, Stuckey, J.A, Pecoraro, V.L. Deposit date: 2018-08-20 Release date: 2019-04-03 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (1.84 Å) Cite: How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation. Chemistry, 25, 2019
7DCL	Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96I/A38S AB5 Descriptor: CHLORIDE ION, HEME C, ZINC ION, ... Authors: Song, W.J, Yu, J. Deposit date: 2020-10-26 Release date: 2021-03-03 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes. Chem Sci, 12, 2021
1KYC	CRYSTAL STRUCTURE OF A DE NOVO DESIGNED TRIMERIC COILED-COIL PEPTIDE STABLIZED BY IONIC INTERACTIONS Descriptor: SIN-GLU-GLU-LEU-ARG-ARG-ARG-ILE-GLU-GLU-LEU-GLU-ARG-ARG-ILE-ARG-NH2, SUCCINIC ACID, SULFATE ION Authors: Burkhard, P, Ivaninskii, S, Lustig, A. Deposit date: 2002-02-04 Release date: 2002-08-07 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Improving coiled-coil stability by optimizing ionic interactions. J.Mol.Biol., 318, 2002
6LDF	Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96K AB5 Descriptor: CHLORIDE ION, HEME C, ZINC ION, ... Authors: Song, W.J, Yu, J. Deposit date: 2019-11-21 Release date: 2021-03-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes. Chem Sci, 12, 2021
6LDE	Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96V AB5 Descriptor: CHLORIDE ION, HEME C, ZINC ION, ... Authors: Song, W.J, Yu, J. Deposit date: 2019-11-21 Release date: 2021-03-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes. Chem Sci, 12, 2021
6LDG	Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96I AB5 Descriptor: CHLORIDE ION, HEME C, MAGNESIUM ION, ... Authors: Song, W.J, Yu, J. Deposit date: 2019-11-21 Release date: 2021-03-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes. Chem Sci, 12, 2021
6VFL	BG505-SOSIP model reconstructed by subparticle extraction and refinement from a tetrahedral nanoparticle T33_dn10 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505-SOSIPv5.2(7S) - gp120, ... Authors: Antanasijevic, A, Ward, A.B. Deposit date: 2020-01-05 Release date: 2020-07-22 Last modified: 2020-08-26 Method: ELECTRON MICROSCOPY (4.14 Å) Cite: Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens. Plos Pathog., 16, 2020
1HQJ	CRYSTAL STRUCTURE OF A DE NOVO DESIGNED TRIMERIC COILED-COIL PEPTIDE Descriptor: LEAD (II) ION, SULFATE ION, ZJU-GLU-LEU-GLU-ALA-ARG-ILE-ARG-GLU-LEU-GLU-ALA-ARG-ILE-LYS-NH2 Authors: Burkhard, P, Meier, M, Lustig, A. Deposit date: 2000-12-18 Release date: 2001-03-14 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Design of a minimal protein oligomerization domain by a structural approach. Protein Sci., 9, 2000
6XXZ	Crystal structure of a de novo designed parallel four-helix coiled coil, 2-EK-4 Descriptor: 2-EK-4, PROPANOIC ACID Authors: Edgell, C.L, Savery, N.J, Woolfson, D.N. Deposit date: 2020-01-29 Release date: 2020-03-18 Last modified: 2020-03-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: RobustDe Novo-Designed Homotetrameric Coiled Coils. Biochemistry, 59, 2020
7TYD	Crystal structure of FGFR4 domain 3 in complex with a de novo-designed mini-binder in P21 space group Descriptor: Binder, Fibroblast growth factor receptor 4 Authors: Park, J.S, Lee, S. Deposit date: 2022-02-12 Release date: 2022-11-09 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.86 Å) Cite: Isoform-specific inhibition of FGFR signaling achieved by a de-novo-designed mini-protein. Cell Rep, 41, 2022
1OVV	CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II) Descriptor: COBALT (II) ION, FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II) Authors: Di Costanzo, L, Geremia, S. Deposit date: 2003-03-27 Release date: 2004-04-06 Last modified: 2019-11-20 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Response of a designed metalloprotein to changes in metal ion coordination, exogenous ligands, and active site volume determined by X-ray crystallography. J.Am.Chem.Soc., 127, 2005
1OVU	CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form I) Descriptor: COBALT (II) ION, four-helix bundle model di-Co(II)-DF1-L13A (form I) Authors: Di Costanzo, L, Geremia, S. Deposit date: 2003-03-27 Release date: 2004-04-06 Last modified: 2019-11-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Response of a designed metalloprotein to changes in metal ion coordination, exogenous ligands, and active site volume determined by X-ray crystallography. J.Am.Chem.Soc., 127, 2005
1OVR	CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Mn(II)-DF1-L13 Descriptor: MANGANESE (II) ION, four-helix bundle model di-Mn(II)-DF1-L13 Authors: Di Costanzo, L, Geremia, S. Deposit date: 2003-03-27 Release date: 2004-05-18 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Response of a designed metalloprotein to changes in metal ion coordination, exogenous ligands, and active site volume determined by X-ray crystallography. J.Am.Chem.Soc., 127, 2005
6MCD	Crystal Structure of tris-thiolate Pb(II) complex with adjacent water in a de novo Three Stranded Coiled Coil Peptide Descriptor: LEAD (II) ION, Pb(II)(GRAND Coil Ser L12CL16A)-, ZINC ION Authors: Tolbert, A.E, Ruckthong, L, Stuckey, J.A, Pecoraro, V.L. Deposit date: 2018-08-31 Release date: 2020-03-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Heteromeric three-stranded coiled coils designed using a Pb(II)(Cys)3template mediated strategy. Nat.Chem., 12, 2020
7N1K	Crystal structure of a de novo-designed mini-protein targeting FGFR Descriptor: Binder Authors: Park, J.S, Lee, S. Deposit date: 2021-05-27 Release date: 2022-04-06 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.01 Å) Cite: Design of protein-binding proteins from the target structure alone. Nature, 605, 2022
7LDF	High resolution NMR solution structure of a de novo designed minimal thioredoxin fold protein Descriptor: Minimal thioredoxin fold protein, ems_thioM_802 Authors: Urbauer, J.L, Strauch, E.M. Deposit date: 2021-01-13 Release date: 2022-07-13 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Sampling of structure and sequence space of small protein folds. Nat Commun, 13, 2022
7DMF	A de novo protein that rigidly extends the structure of tVHS-like domain in tepsin with a new designed domain Descriptor: Designed protein EXTD-3 Authors: Xu, Y. Deposit date: 2020-12-03 Release date: 2021-12-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.201 Å) Cite: A backbone-centred energy function of neural networks for protein design. Nature, 602, 2022
8C5U	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 8-mer RNA, pppGpGpUpApApApUpG (IC8) Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2023-01-10 Release date: 2023-08-30 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.62 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023

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