Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VG0
DownloadVisualize
BU of 5vg0 by Molmil
Room temperature X-ray crystallographic structure of a Jonesia denitrificans lytic polysaccharide monooxygenase at 1.1 angstrom resolution.
Descriptor: COPPER (II) ION, Chitinase, PEROXIDE ION
Authors:Bacik, J.-P, Unkefer, C.J, Chen, J.C.H.
Deposit date:2017-04-10
Release date:2017-05-24
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Neutron and Atomic Resolution X-ray Structures of a Lytic Polysaccharide Monooxygenase Reveal Copper-Mediated Dioxygen Binding and Evidence for N-Terminal Deprotonation.
Biochemistry, 56, 2017
7LQ0
DownloadVisualize
BU of 7lq0 by Molmil
Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases
Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ...
Authors:Thapar, R, Andrew, A.S, Tainer, J.A.
Deposit date:2021-02-12
Release date:2022-02-16
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases
To Be Published
5IS7
DownloadVisualize
BU of 5is7 by Molmil
Crystal structure of mouse CARM1 in complex with decarboxylated SAH
Descriptor: 1,2-ETHANEDIOL, 5'-S-(3-aminopropyl)-5'-thioadenosine, DI(HYDROXYETHYL)ETHER, ...
Authors:Cura, V, Marechal, N, Mailliot, J, Troffer-Charlier, N, Hassenboehler, P, Wurtz, J.M, Bonnefond, L, Cavarelli, J.
Deposit date:2016-03-15
Release date:2017-03-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Crystal structure of mouse CARM1 in complex with decarboxylated SAH
To Be Published
5VGA
DownloadVisualize
BU of 5vga by Molmil
Alternative model for Fab 36-65
Descriptor: Fab 36-65 heavy chain, Fab 36-65 light chain, TRIETHYLENE GLYCOL
Authors:Stanfield, R.L, Rupp, B, Wlodawer, A, Dauter, Z, Porebski, P.J, Minor, W, Jaskolski, M, Pozharski, E, Weichenberger, C.X.
Deposit date:2017-04-10
Release date:2017-12-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Detect, correct, retract: How to manage incorrect structural models.
FEBS J., 285, 2018
5ISI
DownloadVisualize
BU of 5isi by Molmil
Crystal structure of mouse CARM1 in complex with inhibitor SA0920 (5'-amino-5'-deoxyadenosine)
Descriptor: 1,2-DIMETHOXYETHANE, 1,2-ETHANEDIOL, 5'-amino-5'-deoxyadenosine, ...
Authors:Cura, V, Marechal, N, Mailliot, J, Troffer-Charlier, N, Hassenboehler, P, Wurtz, J.M, Bonnefond, L, Cavarelli, J.
Deposit date:2016-03-15
Release date:2017-03-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Crystal structure of mouse CARM1 in complex with inhibitor SA0920 (5'-amino-5'-deoxyadenosine)
To Be Published
5VGE
DownloadVisualize
BU of 5vge by Molmil
Crystal structure of HLA-C*07:02 in complex with RYR peptide
Descriptor: ARG-TYR-ARG-PRO-GLY-THR-VAL-ALA-LEU, Beta-2-microglobulin, ZINC ION, ...
Authors:Mobbs, J.I, Vivian, J.P, Gras, S, Rossjohn, J.
Deposit date:2017-04-11
Release date:2017-06-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and regulatory diversity shape HLA-C protein expression levels.
Nat Commun, 8, 2017
5IQ2
DownloadVisualize
BU of 5iq2 by Molmil
Crystal structure of Esterase mutant - L255W
Descriptor: Esterase
Authors:Seok, S.-H, Seo, M.-D, Kim, J, Ryu, Y.
Deposit date:2016-03-10
Release date:2017-03-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of Esterase mutant - F72G
To Be Published
7LK5
DownloadVisualize
BU of 7lk5 by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 3
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-01
Release date:2022-02-23
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LND
DownloadVisualize
BU of 7lnd by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 4 (merged)
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-06
Release date:2022-02-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
5IQI
DownloadVisualize
BU of 5iqi by Molmil
Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) Y237F mutant in complex with GMPPNP and Magnesium
Descriptor: Bifunctional AAC/APH, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Caldwell, S.J, Berghuis, A.M.
Deposit date:2016-03-10
Release date:2016-05-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Antibiotic Binding Drives Catalytic Activation of Aminoglycoside Kinase APH(2)-Ia.
Structure, 24, 2016
5VGO
DownloadVisualize
BU of 5vgo by Molmil
Bruton's tyrosine kinase (BTK) with compound G-744
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 2-[2-(hydroxymethyl)-3-{1-methyl-6-oxo-5-[(pyrimidin-4-yl)amino]-1,6-dihydropyridin-3-yl}phenyl]-6,6-dimethyl-3,4,6,7-tetrahydro-2H-cyclopenta[4,5]thieno[2,3-c]pyridin-1(5H)-one, GLYCEROL, ...
Authors:Yu, C, Eigenbrot, C.
Deposit date:2017-04-11
Release date:2017-07-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.621 Å)
Cite:Discovery of Potent and Selective Tricyclic Inhibitors of Bruton's Tyrosine Kinase with Improved Druglike Properties.
ACS Med Chem Lett, 8, 2017
7LPU
DownloadVisualize
BU of 7lpu by Molmil
X-ray radiation damage series on Proteinase K at 277K, multi-conformer model, dataset 1
Descriptor: CALCIUM ION, Proteinase K, SULFATE ION
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-12
Release date:2022-02-23
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
5VGU
DownloadVisualize
BU of 5vgu by Molmil
Structure of Halothece sp. PCC 7418 CcmK4
Descriptor: Microcompartments protein
Authors:Sutter, M, Sommer, M, Kerfeld, C.A.
Deposit date:2017-04-11
Release date:2018-04-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.80719328 Å)
Cite:Heterohexamers Formed by CcmK3 and CcmK4 Increase the Complexity of Beta Carboxysome Shells.
Plant Physiol., 179, 2019
7LR5
DownloadVisualize
BU of 7lr5 by Molmil
Ni-bound crystal structure of the engineered cyt cb562 variant, DiCyt2, crystallized in the presence of Ni(II) (M1) and Cu(II) (M2)
Descriptor: HEME C, NICKEL (II) ION, Soluble cytochrome b562
Authors:Choi, T.S, Tezcan, F.A.
Deposit date:2021-02-15
Release date:2022-02-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Overcoming universal restrictions on metal selectivity by protein design.
Nature, 603, 2022
7LP7
DownloadVisualize
BU of 7lp7 by Molmil
The crystal structure of the wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with SJ000983476
Descriptor: (phenylmethyl) (2~{S})-2-[5-oxidanyl-6-oxidanylidene-4-(2-pyridin-4-ylethylcarbamoyl)-1~{H}-pyrimidin-2-yl]pyrrolidine-1-carboxylate, Hexa Vinylpyrrolidone K15, MANGANESE (II) ION, ...
Authors:Cuypers, M.G, Slavish, P.J, Rankovic, Z, White, S.W.
Deposit date:2021-02-11
Release date:2022-02-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of the wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with SJ000983476
To Be Published
5I0C
DownloadVisualize
BU of 5i0c by Molmil
Crystal structure of predicted acyltransferase YjdJ with acyl-CoA N-acyltransferase domain from Escherichia coli str. K-12
Descriptor: CADMIUM ION, NICKEL (II) ION, PHOSPHATE ION, ...
Authors:Filippova, E.V, Minasov, G, Wawrzak, Z, Shuvalova, L, Dubrovska, I, Winsor, J, Grimshaw, S, Wolfe, A.J, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-02-03
Release date:2016-02-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal structure of predicted acyltransferase YjdJ with acyl-CoA N-acyltransferase domain from Escherichia coli str. K-12
To Be Published
5VHN
DownloadVisualize
BU of 5vhn by Molmil
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle
Descriptor: 26S proteasome non-ATPase regulatory subunit 10, 26S proteasome non-ATPase regulatory subunit 2, 26S proteasome regulatory subunit 10B, ...
Authors:Lu, Y, Wu, J, Dong, Y, Chen, S, Sun, S, Ma, Y.B, Ouyang, Q, Finley, D, Kirschner, M.W, Mao, Y.
Deposit date:2017-04-13
Release date:2017-08-23
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (7.3 Å)
Cite:Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle.
Mol. Cell, 67, 2017
5I0H
DownloadVisualize
BU of 5i0h by Molmil
Crystal structure of myosin X motor domain in pre-powerstroke state
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Isabet, T, Blanc, F, Sweeney, H.L, Houdusse, A.
Deposit date:2016-02-04
Release date:2016-09-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The myosin X motor is optimized for movement on actin bundles.
Nat Commun, 7, 2016
5IRA
DownloadVisualize
BU of 5ira by Molmil
Expanding Nature's Catalytic Repertoire -Directed Evolution of an Artificial Metalloenzyme for In Vivo Metathesis
Descriptor: Artificial Metathesase, [1-[4-[[5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]methyl]-2,6-dimethyl-phenyl]-3-(2,4,6-trimethylphenyl)-4,5-dihydroimidazol-1-ium-2-yl]-bis(chloranyl)ruthenium
Authors:Heinisch, T, Jeschek, M, Reuter, R, Trindler, C, Panke, S, Ward, T.R.
Deposit date:2016-03-12
Release date:2016-08-31
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Directed evolution of artificial metalloenzymes for in vivo metathesis.
Nature, 537, 2016
1SF4
DownloadVisualize
BU of 1sf4 by Molmil
BINDING OF N,N'-DIACETYLCHITOBIOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LYSOZYME
Authors:Von Dreele, R.B.
Deposit date:2004-02-19
Release date:2004-03-02
Last modified:2024-10-16
Method:POWDER DIFFRACTION
Cite:Binding of N-acetylglucosamine oligosaccharides to hen egg-white lysozyme: a powder diffraction study.
Acta Crystallogr.,Sect.D, 61, 2005
5VHU
DownloadVisualize
BU of 5vhu by Molmil
E. coli CFT073 c3406
Descriptor: Isomerase, SULFATE ION
Authors:Cech, D.L, Pratt, A.C, Woodard, R.W.
Deposit date:2017-04-13
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Insights into the mechanism of arabinose-5-phosphate isomerases.
To Be Published
5I1L
DownloadVisualize
BU of 5i1l by Molmil
CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY IGHV5-51/IGKV4-1
Descriptor: FAB HEAVY CHAIN, FAB LIGHT CHAIN, GLYCEROL
Authors:Teplyakov, A, Obmolova, G, Malia, T, Luo, J, Gilliland, G.
Deposit date:2016-02-05
Release date:2016-06-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural diversity in a human antibody germline library.
Mabs, 8, 2016
5I2C
DownloadVisualize
BU of 5i2c by Molmil
Arginine-bound CASTOR1 from Homo sapiens
Descriptor: ACETATE ION, ARGININE, GATS-like protein 3
Authors:Saxton, R.A, Knockenhauer, K.E, Schwartz, T.U.
Deposit date:2016-02-08
Release date:2016-08-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Mechanism of arginine sensing by CASTOR1 upstream of mTORC1.
Nature, 536, 2016
1SL5
DownloadVisualize
BU of 1sl5 by Molmil
Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with LNFP III (Dextra L504).
Descriptor: CALCIUM ION, MAGNESIUM ION, alpha-L-fucopyranose-(1-3)-[beta-D-galactopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose, ...
Authors:Guo, Y, Feinberg, H, Conroy, E, Mitchell, D.A, Alvarez, R, Blixt, O, Taylor, M.E, Weis, W.I, Drickamer, K.
Deposit date:2004-03-05
Release date:2004-06-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR
Nat.Struct.Mol.Biol., 11, 2004
7LSJ
DownloadVisualize
BU of 7lsj by Molmil
Cu-bound crystal structure of the engineered cyt cb562 variant, DiCyt2 - H63A, crystallized in the presence of Cu(II)
Descriptor: CALCIUM ION, COPPER (II) ION, HEME C, ...
Authors:Choi, T.S, Tezcan, F.A.
Deposit date:2021-02-18
Release date:2022-02-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structure-guided metal selectivity in malleable protein interface mediated by single disulfide bond
To Be Published

243531

數據於2025-10-22公開中

PDB statisticsPDBj update infoContact PDBjnumon