Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DYO
DownloadVisualize
BU of 8dyo by Molmil
Cryo-EM structure of Importin-4 bound to RanGTP
Descriptor: GTP-binding nuclear protein GSP1/CNR1, GUANOSINE-5'-TRIPHOSPHATE, Importin-4, ...
Authors:Bernardes, N.E, Fung, H.Y.J, Li, Y, Chen, Z, Chook, Y.M.
Deposit date:2022-08-04
Release date:2022-09-21
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Structure of IMPORTIN-4 bound to the H3-H4-ASF1 histone-histone chaperone complex.
Proc.Natl.Acad.Sci.USA, 119, 2022
7F3L
DownloadVisualize
BU of 7f3l by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
Descriptor: RNA (5'-R(P*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
To Be Published
7F3J
DownloadVisualize
BU of 7f3j by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
Descriptor: RNA (5'-R(*UP*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
To Be Published
7F3K
DownloadVisualize
BU of 7f3k by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
Descriptor: RNA (5'-R(*UP*CP*AP*UP*(5MC)P*U)-3'), SULFATE ION, Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
To Be Published
3D0X
DownloadVisualize
BU of 3d0x by Molmil
Crystal Structure of the unbound lysine riboswitch
Descriptor: RNA (161-MER)
Authors:Batey, R.T, Garst, A.D, Heroux, A, Rambo, R.P.
Deposit date:2008-05-02
Release date:2008-07-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of the lysine riboswitch regulatory mRNA element.
J.Biol.Chem., 283, 2008
2KZL
DownloadVisualize
BU of 2kzl by Molmil
Specifier domain and GA motif region of B. subtilis tyrS T box leader RNA
Descriptor: RNA (55-MER)
Authors:Wang, J.
Deposit date:2010-06-18
Release date:2011-02-23
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Specifier domain and GA motif region of B. subtilis tyrS T box leader RNA
To be Published
3CRM
DownloadVisualize
BU of 3crm by Molmil
Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel
Descriptor: tRNA delta(2)-isopentenylpyrophosphate transferase
Authors:Huang, R.H, Xie, W, Zhou, C.
Deposit date:2008-04-07
Release date:2008-04-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel
J.Mol.Biol., 367, 2007
1ZU1
DownloadVisualize
BU of 1zu1 by Molmil
Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa
Descriptor: RNA binding protein ZFa, ZINC ION
Authors:Moller, H.M, Martinez-Yamout, M.A, Dyson, H.J, Wright, P.E.
Deposit date:2005-05-29
Release date:2005-09-20
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal zinc fingers of the Xenopus laevis double-stranded RNA-binding protein ZFa
J.Mol.Biol., 351, 2005
7F3I
DownloadVisualize
BU of 7f3i by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
Descriptor: RNA (5'-R(*GP*UP*(5MC)P*CP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
To Be Published
2PGG
DownloadVisualize
BU of 2pgg by Molmil
Crystal Structure of a Birnavirus (IBDV) RNA-dependent RNA Polymerase VP1
Descriptor: RNA-directed RNA polymerase
Authors:Pan, J, Vakharia, V.N, Tao, Y.J.
Deposit date:2007-04-09
Release date:2007-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of a birnavirus polymerase reveals a distinct active site topology.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3P1G
DownloadVisualize
BU of 3p1g by Molmil
Crystal Structure of the Xenotropic Murine Leukemia Virus-Related Virus (XMRV) RNase H Domain
Descriptor: MAGNESIUM ION, Xenotropic Murine Leukemia Virus-Related Virus (XMRV) RNase H Domain
Authors:Kirby, K.A, Sarafianos, S.G.
Deposit date:2010-09-30
Release date:2010-10-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Inhibition Studies of the RNase H Function of Xenotropic Murine Leukemia Virus-Related Virus Reverse Transcriptase.
Antimicrob.Agents Chemother., 56, 2012
1YUB
DownloadVisualize
BU of 1yub by Molmil
SOLUTION STRUCTURE OF AN RRNA METHYLTRANSFERASE (ERMAM) THAT CONFERS MACROLIDE-LINCOSAMIDE-STREPTOGRAMIN ANTIBIOTIC RESISTANCE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: RRNA METHYLTRANSFERASE
Authors:Yu, L, Petros, A.M, Schnuchel, A, Zhong, P, Severin, J.M, Walter, K, Holzman, T.F, Fesik, S.W.
Deposit date:1997-03-04
Release date:1998-03-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of an rRNA methyltransferase (ErmAM) that confers macrolide-lincosamide-streptogramin antibiotic resistance.
Nat.Struct.Biol., 4, 1997
2C5U
DownloadVisualize
BU of 2c5u by Molmil
T4 RNA Ligase (Rnl1) Crystal Structure
Descriptor: CALCIUM ION, CHLORIDE ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ...
Authors:El Omari, K, Ren, J, Bird, L.E, Bona, M.K, Klarmann, G, LeGrice, S.F.J, Stammers, D.K.
Deposit date:2005-11-01
Release date:2005-11-04
Last modified:2012-09-12
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Molecular Architecture and Ligand Recognition Determinants for T4 RNA Ligase
J.Biol.Chem., 281, 2006
8Q7V
DownloadVisualize
BU of 8q7v by Molmil
Structure of the recycling U5 snRNP bound to chaperones CD2BP2 and TSSC4 (State 1)
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, CD2 antigen cytoplasmic tail-binding protein 2, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Riabov Bassat, D, Plaschka, C, Vorlaender, M.K.
Deposit date:2023-08-17
Release date:2024-04-17
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis of human U5 snRNP late biogenesis and recycling.
Nat.Struct.Mol.Biol., 31, 2024
8TKB
DownloadVisualize
BU of 8tkb by Molmil
tRNA 2-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with 5'-AMP
Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, POTASSIUM ION, ...
Authors:Jacewicz, A, Dantuluri, S, Shuman, S.
Deposit date:2023-07-25
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:tRNA 2-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with 5'-AMP
To Be Published
2RS6
DownloadVisualize
BU of 2rs6 by Molmil
Solution structure of the N-terminal dsRBD from RNA helicase A
Descriptor: ATP-dependent RNA helicase A
Authors:Nagata, T, Muto, Y, Tsuda, K, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-11-29
Release date:2012-03-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structures of the double-stranded RNA-binding domains from RNA helicase A
Proteins, 80, 2012
2KVN
DownloadVisualize
BU of 2kvn by Molmil
Phi29 E-loop hairpin
Descriptor: RNA (5'-R(*GP*GP*UP*GP*AP*UP*UP*GP*AP*GP*UP*UP*CP*AP*CP*CP*A)-3')
Authors:Harris, S.M, Schroeder, S.J.
Deposit date:2010-03-19
Release date:2010-07-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance structure of the prohead RNA E-loop hairpin.
Biochemistry, 49, 2010
4KMC
DownloadVisualize
BU of 4kmc by Molmil
Structure analysis of M. Tuberculosis rRNA transcriptional regulator CarD and its interaction with T. Aquaticus RNA polymerase-BETA1 domain
Descriptor: RNA polymerase-binding transcription factor CarD
Authors:Gangwar, S.P, Meena, S.R, Saxena, A.K.
Deposit date:2013-05-08
Release date:2014-02-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of the carboxy-terminal domain of Mycobacterium tuberculosis CarD protein: an essential rRNA transcriptional regulator.
Acta Crystallogr.,Sect.F, 70, 2014
2RS7
DownloadVisualize
BU of 2rs7 by Molmil
Solution structure of the second dsRBD from RNA helicase A
Descriptor: ATP-dependent RNA helicase A
Authors:Nagata, T, Muto, Y, Tsuda, K, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-11-29
Release date:2012-03-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structures of the double-stranded RNA-binding domains from RNA helicase A
Proteins, 80, 2012
8Q7Q
DownloadVisualize
BU of 8q7q by Molmil
Structure of the recycling U5 snRNP bound to chaperones CD2BP2 and TSSC4 (State 2)
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, CD2 antigen cytoplasmic tail-binding protein 2, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Riabov Bassat, D, Plaschka, C, Vorlaender, M.K.
Deposit date:2023-08-16
Release date:2024-04-17
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis of human U5 snRNP late biogenesis and recycling.
Nat.Struct.Mol.Biol., 31, 2024
2G3S
DownloadVisualize
BU of 2g3s by Molmil
RNA structure containing GU base pairs
Descriptor: 5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3', MAGNESIUM ION
Authors:Jang, S.B, Hung, L.W, Jeong, M.S, Holbrook, E.L, Chen, X, Turner, D.H, Holbrook, S.R.
Deposit date:2006-02-20
Release date:2007-01-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:The crystal structure at 1.5 angstroms resolution of an RNA octamer duplex containing tandem G.U basepairs
Biophys.J., 90, 2006
3N97
DownloadVisualize
BU of 3n97 by Molmil
RNA polymerase alpha C-terminal domain (E. coli) and sigma region 4 (T. aq. mutant) bound to (UP,-35 element) DNA
Descriptor: ACETATE ION, DNA (5'-D(*CP*CP*AP*TP*GP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP*TP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*AP*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*CP*AP*TP*GP*G)-3'), ...
Authors:Lara-Gonzalez, S, Birktoft, J.J, Lawson, C.L.
Deposit date:2010-05-28
Release date:2011-06-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.252 Å)
Cite:The RNA Polymerase alpha Subunit Recognizes the DNA Shape of the Upstream Promoter Element.
Biochemistry, 59, 2020
1S4F
DownloadVisualize
BU of 1s4f by Molmil
Crystal Structure of RNA-dependent RNA polymerase construct 2 from bovine viral diarrhea virus (BVDV)
Descriptor: RNA-dependent RNA polymerase
Authors:Choi, K.H, Groarke, J.M, Young, D.C, Kuhn, R.J, Smith, J.L, Pevear, D.C, Rossmann, M.G.
Deposit date:2004-01-16
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of the RNA-dependent RNA polymerase from bovine viral diarrhea virus establishes the role of GTP in de novo initiation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
5T76
DownloadVisualize
BU of 5t76 by Molmil
A fragment of a human tRNA synthetase
Descriptor: Alanine--tRNA ligase, cytoplasmic
Authors:Sun, L, Schimmel, P.
Deposit date:2016-09-02
Release date:2016-11-30
Last modified:2017-01-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Two crystal structures reveal design for repurposing the C-Ala domain of human AlaRS.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
2MS5
DownloadVisualize
BU of 2ms5 by Molmil
Structural dynamics of double-helical RNA having CAG motif
Descriptor: RNA_(5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')
Authors:Kumar, A, Tawani, A.
Deposit date:2014-07-23
Release date:2015-01-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Insights Reveal the Dynamics of the Repeating r(CAG) Transcript Found in Huntington's Disease (HD) and Spinocerebellar Ataxias (SCAs)
Plos One, 10, 2015

222415

數據於2024-07-10公開中

PDB statisticsPDBj update infoContact PDBjnumon