PDB: 1042 resultsInfo pagesStatus searchChemie searchBIRD

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8WAQ	Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II positioned 7nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (6.29 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8U4S	Structure of trimeric CXCR4 in complex with REGN7663 Fab Descriptor: (2R)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9Z)-octadec-9-enoate, C-X-C chemokine receptor type 4, CHOLESTEROL, ... Authors: Saotome, K, McGoldrick, L.L, Franklin, M.C. Deposit date: 2023-09-11 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Structural insights into CXCR4 modulation and oligomerization Biorxiv, 2024
8U4R	Structure of REGN7663-Fab bound CXCR4 Descriptor: C-X-C chemokine receptor type 4, CHOLESTEROL, REGN7663 Fab heavy chain, ... Authors: Saotome, K, McGoldrick, L.L, Franklin, M.C. Deposit date: 2023-09-11 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural insights into CXCR4 modulation and oligomerization Biorxiv, 2024
8YB5	SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C6 symmetry) Descriptor: Non-structural protein 4, Papain-like protease nsp3 Authors: Huang, Y.X, Zhong, L.J, Zhang, W.X, Ni, T. Deposit date: 2024-02-11 Release date: 2024-06-19 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Molecular Architecture of Coronavirus Double Membrane Vesicle Pore Complex To Be Published
2JKT	AP2 CLATHRIN ADAPTOR CORE with CD4 Dileucine peptide RM(phosphoS) EIKRLLSE Q to E mutant Descriptor: AP-2 COMPLEX SUBUNIT ALPHA-2, AP-2 COMPLEX SUBUNIT BETA-1, AP-2 COMPLEX SUBUNIT MU-1, ... Authors: Owen, D.J, McCoy, A.J, Kelly, B.T, Evans, P.R. Deposit date: 2008-08-29 Release date: 2008-10-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.4 Å) Cite: A Structural Explanation for the Binding of Endocytic Dileucine Motifs by the Ap2 Complex. Nature, 456, 2008
2JKR	AP2 CLATHRIN ADAPTOR CORE with Dileucine peptide RM(phosphoS)QIKRLLSE Descriptor: AP-2 COMPLEX SUBUNIT ALPHA-2, AP-2 COMPLEX SUBUNIT BETA-1, AP-2 COMPLEX SUBUNIT MU-1, ... Authors: Owen, D.J, McCoy, A.J, Kelly, B.T, Evans, P.R. Deposit date: 2008-08-29 Release date: 2008-10-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.98 Å) Cite: A Structural Explanation for the Binding of Endocytic Dileucine Motifs by the Ap2 Complex. Nature, 456, 2008
2KA4	NMR structure of the CBP-TAZ1/STAT2-TAD complex Descriptor: Crebbp protein, Signal transducer and activator of transcription 2, ZINC ION Authors: Wojciak, J.M, Martinez-Yamout, M.A, Dyson, H.J, Wright, P.E. Deposit date: 2008-10-30 Release date: 2009-04-21 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: Structural basis for recruitment of CBP/p300 coactivators by STAT1 and STAT2 transactivation domains Embo J., 28, 2009
2K05	Structure of SDF1 in complex with the CXCR4 N-terminus containing sulfotyrosines at postitions 7, 12 and 21 Descriptor: C-X-C chemokine receptor type 4, Stromal cell-derived factor 1 Authors: Volkman, B.F, Veldkamp, C.T, Peterson, F.C. Deposit date: 2008-01-24 Release date: 2008-10-28 Last modified: 2023-11-15 Method: SOLUTION NMR Cite: Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF-1/CXCL12. Sci.Signal., 1, 2008
2KA6	NMR structure of the CBP-TAZ2/STAT1-TAD complex Descriptor: CREB-binding protein, Signal transducer and activator of transcription 1-alpha/beta, ZINC ION Authors: Wojciak, J.M, Martinez-Yamout, M.A, Dyson, H.J, Wright, P.E. Deposit date: 2008-10-30 Release date: 2009-04-07 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: Structural basis for recruitment of CBP/p300 coactivators by STAT1 and STAT2 transactivation domains. Embo J., 28, 2009
2KQV	SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA binding. I: Structure of the SUD-M domain of SUD-MC Descriptor: Non-structural protein 3 Authors: Johnson, M.A, Chatterjee, A, Wuthrich, K, Joint Center for Structural Genomics (JCSG) Deposit date: 2009-11-19 Release date: 2009-12-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: SARS coronavirus unique domain: three-domain molecular architecture in solution and RNA binding. J.Mol.Biol., 400, 2010
2I2X	Crystal structure of methanol:cobalamin methyltransferase complex MtaBC from Methanosarcina barkeri Descriptor: 5-HYDROXYBENZIMIDAZOLYLCOB(III)AMIDE, Methyltransferase 1, POTASSIUM ION, ... Authors: Hagemeier, C.H, Kruer, M, Thauer, R.K, Warkentin, E, Ermler, U. Deposit date: 2006-08-17 Release date: 2006-11-21 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Insight into the mechanism of biological methanol activation based on the crystal structure of the methanol-cobalamin methyltransferase complex Proc.Natl.Acad.Sci.Usa, 103, 2006
2KQW	SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA binding. II: Structure of the SUD-C domain of SUD-MC Descriptor: Non-structural protein 3 Authors: Johnson, M.A, Chatterjee, A, Wuthrich, K, Joint Center for Structural Genomics (JCSG) Deposit date: 2009-11-19 Release date: 2010-02-02 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: SARS coronavirus unique domain: three-domain molecular architecture in solution and RNA binding. J.Mol.Biol., 400, 2010
2K2U	NMR Structure of the complex between Tfb1 subunit of TFIIH and the activation domain of VP16 Descriptor: Alpha trans-inducing protein, RNA polymerase II transcription factor B subunit 1 Authors: Langlois, C, Mas, C, Di Lello, P, Miller Jenkins, P.M, Legault, J, Omichinski, J.G. Deposit date: 2008-04-11 Release date: 2008-08-12 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: NMR Structure of the Complex between the Tfb1 Subunit of TFIIH and the Activation Domain of VP16: Structural Similarities between VP16 and p53. J.Am.Chem.Soc., 130, 2008
2K04	Structure of SDF1 in complex with the CXCR4 N-terminus containing no sulfotyrosines Descriptor: C-X-C chemokine receptor type 4, Stromal cell-derived factor 1 Authors: Volkman, B.F, Veldkamp, C.T, Peterson, F.C. Deposit date: 2008-01-24 Release date: 2008-10-28 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF-1/CXCL12 Sci.Signal., 1, 2008
2K03	Structure of SDF1 in complex with the CXCR4 N-terminus containing a sulfotyrosine at postition 21 Descriptor: C-X-C chemokine receptor type 4, Stromal cell-derived factor 1 Authors: Volkman, B.F, Veldkamp, C.T, Peterson, F.C. Deposit date: 2008-01-24 Release date: 2008-10-28 Last modified: 2023-11-15 Method: SOLUTION NMR Cite: Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF-1/CXCL12 Sci.Signal., 1, 2008
3GHG	Crystal Structure of Human Fibrinogen Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, A knob, B knob, ... Authors: Doolittle, R.F, Kollman, J.M, Sawaya, M.R, Pandi, L, Riley, M. Deposit date: 2009-03-03 Release date: 2009-05-19 Last modified: 2023-05-03 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of human fibrinogen. Biochemistry, 48, 2009
3GCM	Crystal Structure of E. coli polynucleotide phosphorylase bound to RNA and RNase E Descriptor: CITRATE ANION, GUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, ... Authors: Nurmohamed, S, Luisi, B.L. Deposit date: 2009-02-22 Release date: 2009-06-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of Escherichia coli polynucleotide phosphorylase core bound to RNase E, RNA and manganese: implications for catalytic mechanism and RNA degradosome assembly. J.Mol.Biol., 389, 2009
3GME	Crystal Structure of Polynucleotide Phosphorylase in complex with RNase E and manganese Descriptor: MANGANESE (II) ION, Polyribonucleotide nucleotidyltransferase, Ribonuclease E Authors: Nurmohamed, S, Luisi, B.L. Deposit date: 2009-03-13 Release date: 2009-06-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of Escherichia coli polynucleotide phosphorylase core bound to RNase E, RNA and manganese: implications for catalytic mechanism and RNA degradosome assembly. J.Mol.Biol., 389, 2009
3GLF	Crystal Structure of the Ecoli Clamp Loader Bound to Primer-Template DNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3'), ... Authors: Simonetta, K.R, Kuriyan, J. Deposit date: 2009-03-12 Release date: 2009-05-26 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.388 Å) Cite: The mechanism of ATP-dependent primer-template recognition by a clamp loader complex. Cell(Cambridge,Mass.), 137, 2009
3GLG	Crystal Structure of a Mutant (gammaT157A) E. coli Clamp Loader Bound to Primer-Template DNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3'), ... Authors: Simonetta, K.R, Seyedin, S.N, Kuriyan, J. Deposit date: 2009-03-12 Release date: 2009-05-26 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.25 Å) Cite: The mechanism of ATP-dependent primer-template recognition by a clamp loader complex. Cell(Cambridge,Mass.), 137, 2009
3GYX	Crystal structure of adenylylsulfate reductase from Desulfovibrio gigas Descriptor: Adenylylsulfate Reductase, FLAVIN-ADENINE DINUCLEOTIDE, IRON/SULFUR CLUSTER Authors: Chiang, Y.-L, Hsieh, Y.-C, Liu, E.-H, Liu, M.-Y, Chen, C.-J. Deposit date: 2009-04-06 Release date: 2009-12-15 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal structure of Adenylylsulfate reductase from Desulfovibrio gigas suggests a potential self-regulation mechanism involving the C terminus of the beta-subunit J.Bacteriol., 191, 2009
3GLI	Crystal Structure of the E. coli clamp loader bound to Primer-Template DNA and Psi Peptide Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3'), ... Authors: Simonetta, K.R, Cantor, A.J, Kuriyan, J. Deposit date: 2009-03-12 Release date: 2009-05-26 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.5 Å) Cite: The mechanism of ATP-dependent primer-template recognition by a clamp loader complex. Cell(Cambridge,Mass.), 137, 2009
3H1C	Crystal structure of Polynucleotide Phosphorylase (PNPase) core bound to RNase E and Tungstate Descriptor: Polyribonucleotide nucleotidyltransferase, Ribonuclease E, TUNGSTATE(VI)ION Authors: Nurmohamed, S. Deposit date: 2009-04-11 Release date: 2009-05-19 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.57 Å) Cite: Crystal structure of Escherichia coli polynucleotide phosphorylase core bound to RNase E, RNA and manganese: implications for catalytic mechanism and RNA degradosome assembly J.Mol.Biol., 389, 2009
3GLH	Crystal Structure of the E. coli clamp loader bound to Psi Peptide Descriptor: DNA polymerase III subunit delta, DNA polymerase III subunit delta', DNA polymerase III subunit tau Authors: Kazmirski, S.L, Simonetta, K.R, Kuriyan, J. Deposit date: 2009-03-12 Release date: 2009-05-26 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.891 Å) Cite: The mechanism of ATP-dependent primer-template recognition by a clamp loader complex. Cell(Cambridge,Mass.), 137, 2009
8GXQ	PIC-Mediator in complex with +1 nucleosome (T40N) in MH-binding state Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ... Authors: Chen, X, Wang, X, Liu, W, Ren, Y, Qu, X, Li, J, Yin, X, Xu, Y. Deposit date: 2022-09-21 Release date: 2022-11-02 Method: ELECTRON MICROSCOPY (5.04 Å) Cite: Structures of +1 nucleosome-bound PIC-Mediator complex. Science, 378, 2022

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