Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6TFQ
DownloadVisualize
BU of 6tfq by Molmil
Structure in P3212 form of the PBP/SBP MoaA in complex with mannopinic acid from A.tumefacien R10
Descriptor: (2~{R})-2-[[(3~{R},4~{R},5~{S})-3,4,5,6-tetrakis(oxidanyl)-2-oxidanylidene-hexyl]amino]pentanedioic acid, ABC transporter substrate-binding protein, CHLORIDE ION, ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2019-11-14
Release date:2020-01-22
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Import pathways of the mannityl-opines into the bacterial pathogen Agrobacterium tumefaciens: structural, affinity and in vivo approaches.
Biochem.J., 477, 2020
8HVT
DownloadVisualize
BU of 8hvt by Molmil
Structure of the human CLC-7/Ostm1 complex reveals a novel state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, H(+)/Cl(-) exchange transporter 7, Osteopetrosis-associated transmembrane protein 1, ...
Authors:Zhang, Z.X, Chen, L, He, J, She, J.
Deposit date:2022-12-27
Release date:2024-01-03
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of the human CLC-7/Ostm1 complex reveals a novel state
JUSTC, 53, 2023
9B5N
DownloadVisualize
BU of 9b5n by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from consensus
Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
5KC6
DownloadVisualize
BU of 5kc6 by Molmil
Crystal structure of Cbln1 (Val55-Gly58 deletion mutant)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cerebellin-1
Authors:Elegheert, J, Clay, J.E, Aricescu, A.R.
Deposit date:2016-06-05
Release date:2016-07-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Structural basis for integration of GluD receptors within synaptic organizer complexes.
Science, 353, 2016
9B5U
DownloadVisualize
BU of 9b5u by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from cluster 1 (ATP/Mg)
Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
8HWK
DownloadVisualize
BU of 8hwk by Molmil
Limosilactobacillus reuteri N1 GtfB-maltohexaose
Descriptor: CITRIC ACID, DI(HYDROXYETHYL)ETHER, SODIUM ION, ...
Authors:Dong, J.J, Bai, Y.X.
Deposit date:2022-12-30
Release date:2024-01-03
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Insights into the Structure-Function Relationship of GH70 GtfB alpha-Glucanotransferases from the Crystal Structure and Molecular Dynamic Simulation of a Newly Characterized Limosilactobacillus reuteri N1 GtfB Enzyme.
J.Agric.Food Chem., 72, 2024
9B5R
DownloadVisualize
BU of 9b5r by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 3 map and model (ATP/Mg)
Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9B5L
DownloadVisualize
BU of 9b5l by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (Ub(A)-AMP)
Descriptor: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, Polyubiquitin, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
2IT6
DownloadVisualize
BU of 2it6 by Molmil
Crystal Structure of DCSIGN-CRD with man2
Descriptor: CALCIUM ION, CD209 antigen, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose
Authors:Weis, W.I, Feinberg, H, Castelli, R, Drickamer, K, Seeberger, P.H.
Deposit date:2006-10-19
Release date:2006-12-05
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Multiple modes of binding enhance the affinity of DC-SIGN for high mannose N-linked glycans found on viral glycoproteins.
J.Biol.Chem., 282, 2007
5KCQ
DownloadVisualize
BU of 5kcq by Molmil
Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate
Descriptor: GERANYL S-THIOLODIPHOSPHATE, aromatic prenyltransferase
Authors:Sun, F, Gao, B.
Deposit date:2016-06-06
Release date:2016-12-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase.
Nat. Chem. Biol., 13, 2017
9BD3
DownloadVisualize
BU of 9bd3 by Molmil
Structure of the MAGEA4 MHD-RAD18 R6BD Complex
Descriptor: E3 ubiquitin-protein ligase RAD18, Melanoma antigen A 4
Authors:Forker, K, Zhou, P.
Deposit date:2024-04-10
Release date:2024-06-05
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Crystal structure of MAGEA4 MHD-RAD18 R6BD reveals a flipped binding mode compared to AlphaFold2 prediction.
Embo J., 43, 2024
2ITF
DownloadVisualize
BU of 2itf by Molmil
Crystal structure IsdA NEAT domain from Staphylococcus aureus with heme bound
Descriptor: Iron-regulated surface determinant protein A, PROTOPORPHYRIN IX CONTAINING FE
Authors:Grigg, J.C, Vermeiren, C.L, Heinrichs, D.E, Murphy, M.E.
Deposit date:2006-10-19
Release date:2006-12-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Haem recognition by a Staphylococcus aureus NEAT domain.
Mol.Microbiol., 63, 2007
9B5F
DownloadVisualize
BU of 9b5f by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 1 map and model (Ub(A)/ATP/Mg)
Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
5KD1
DownloadVisualize
BU of 5kd1 by Molmil
Sperm whale myoglobin H64A with nitrosoamphetamine
Descriptor: GLYCEROL, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Wang, B, Guan, Y, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-06-07
Release date:2017-05-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Nitrosoamphetamine binding to myoglobin and hemoglobin: Crystal structure of the H64A myoglobin-nitrosoamphetamine adduct.
Nitric Oxide, 67, 2017
8HW3
DownloadVisualize
BU of 8hw3 by Molmil
Limosilactobacillus reuteri N1 GtfB-acarbose
Descriptor: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, GLYCEROL, SODIUM ION, ...
Authors:Dong, J.J, Bai, Y.X.
Deposit date:2022-12-28
Release date:2024-01-03
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Insights into the Structure-Function Relationship of GH70 GtfB alpha-Glucanotransferases from the Crystal Structure and Molecular Dynamic Simulation of a Newly Characterized Limosilactobacillus reuteri N1 GtfB Enzyme.
J.Agric.Food Chem., 72, 2024
9BB3
DownloadVisualize
BU of 9bb3 by Molmil
Backbone Modification in the GA Module of Protein PAB: beta3-residues at positions 22 and 26
Descriptor: Peptostreptococcal albumin-binding protein
Authors:Lin, Y, Horne, W.S.
Deposit date:2024-04-05
Release date:2024-06-05
Last modified:2024-08-21
Method:SOLUTION NMR
Cite:Backbone Modification in a Protein Hydrophobic Core.
Chemistry, 30, 2024
9B5A
DownloadVisualize
BU of 9b5a by Molmil
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 6
Descriptor: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
5K5T
DownloadVisualize
BU of 5k5t by Molmil
Crystal structure of the inactive form of human calcium-sensing receptor extracellular domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Extracellular calcium-sensing receptor, ...
Authors:Geng, Y, Mosyak, L, Kurinov, I, Zuo, H, Sturchler, E, Cheng, T.C, Subramanyam, P, Brown, A.P, Brennan, S.C, Mun, H.-C, Bush, M, Chen, Y, Nguyen, T, Cao, B, Chang, D, Quick, M, Conigrave, A, Colecraft, H.M, McDonald, P, Fan, Q.R.
Deposit date:2016-05-23
Release date:2016-08-03
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural mechanism of ligand activation in human calcium-sensing receptor.
Elife, 5, 2016
9B5H
DownloadVisualize
BU of 9b5h by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 3 map and model (Ub(A)-AMP/PPi/Mg)
Descriptor: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, Large ribosomal subunit protein eL40B, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9B5I
DownloadVisualize
BU of 9b5i by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 4 map and model (Ub(A)-AMP/PPi/Mg)
Descriptor: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9B5Q
DownloadVisualize
BU of 9b5q by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 2 map and model (ATP/Mg)
Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
8I5K
DownloadVisualize
BU of 8i5k by Molmil
Crystal structure of chitin oligosaccharide binding protein from Vibrio cholera in complex with chitotriose.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ABC transporter substrate-binding protein, MAGNESIUM ION
Authors:Ohnuma, T, Takeshita, D.
Deposit date:2023-01-25
Release date:2024-01-03
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.219 Å)
Cite:Periplasmic chitooligosaccharide-binding protein requires a three-domain organization for substrate translocation.
Sci Rep, 13, 2023
9B5S
DownloadVisualize
BU of 9b5s by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 4 map and model (ATP/Mg)
Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
1LNL
DownloadVisualize
BU of 1lnl by Molmil
Structure of deoxygenated hemocyanin from Rapana thomasiana
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, hemocyanin
Authors:Perbandt, M, Guthoehrlein, E.W, Rypniewski, W, Idakieva, K, Stoeva, S, Voelter, W, Genov, N, Betzel, C.
Deposit date:2002-05-03
Release date:2003-06-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structure of a functional unit from the wall of a gastropod hemocyanin offers a possible mechanism for cooperativity
Biochemistry, 42, 2003
9BKF
DownloadVisualize
BU of 9bkf by Molmil
Crystal structure of selenomethionine labeled bovine trypsin mutant - S195A solved by Sulphur-SAD at 1A wavelength
Descriptor: Serine protease 1
Authors:Zhou, D, Chen, L, Rose, J.P, Wang, B.C.
Deposit date:2024-04-27
Release date:2024-06-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of selenomethionine labeled bovine trypsin mutant - S195A solved by Sulphur-SAD at 1A wavelength
To Be Published

238582

數據於2025-07-09公開中

PDB statisticsPDBj update infoContact PDBjnumon