PDB: 73332 resultsInfo pagesStatus searchChemie searchBIRD

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2DF4	Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Mn2+ Descriptor: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... Authors: Nakamura, A, Yao, M, Tanaka, I. Deposit date: 2006-02-23 Release date: 2006-07-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
1Z79	Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) Descriptor: CALCIUM ION, RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' Authors: Gherghe, C.M, Krahn, J.M, Weeks, K.M. Deposit date: 2005-03-24 Release date: 2005-10-18 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA. J.Am.Chem.Soc., 127, 2005
2DQN	Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Asn Descriptor: ASPARAGINE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ... Authors: Nakamura, A, Yao, M, Tanaka, I. Deposit date: 2006-05-29 Release date: 2006-07-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
1TN1	CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA Descriptor: LEAD (II) ION, MAGNESIUM ION, SPERMINE, ... Authors: Dewan, J.C, Brown, R.S, Hingerty, B.E, Klug, A. Deposit date: 1986-12-04 Release date: 1987-01-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA. Biochemistry, 24, 1985
2G5I	Structure of tRNA-Dependent Amidotransferase GatCAB complexed with ADP-AlF4 Descriptor: ADENOSINE-5'-DIPHOSPHATE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ... Authors: Nakamura, A, Yao, M, Tanaka, I. Deposit date: 2006-02-23 Release date: 2006-07-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
1YZD	Crystal structure of an RNA duplex containing a site specific 2'-amine substitution at a C-G Watson-Crick base pair Descriptor: CALCIUM ION, RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*GP*UP*CP*UP*GP*C)-3' Authors: Gherghe, C.M, Krahn, J.M, Weeks, K.M. Deposit date: 2005-02-28 Release date: 2005-10-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA. J.Am.Chem.Soc., 127, 2005
3V2I	Structure of a Peptidyl-tRNA hydrolase (PTH) from Burkholderia thailandensis Descriptor: CITRIC ACID, Peptidyl-tRNA hydrolase, UNKNOWN LIGAND Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2011-12-12 Release date: 2012-01-11 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One, 8, 2013
4KIT	Crystal structure of human Brr2 in complex with the Prp8 Jab1/MPN domain Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Pre-mRNA-processing-splicing factor 8, ... Authors: Wahl, M.C, Wandersleben, T, Santos, K.F. Deposit date: 2013-05-02 Release date: 2013-06-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.598 Å) Cite: Inhibition of RNA helicase Brr2 by the C-terminal tail of the spliceosomal protein Prp8. Science, 341, 2013
5TC1	In situ structures of the genome and genome-delivery apparatus in ssRNA bacteriophage MS2 Descriptor: Capsid protein, Maturation protein, phage MS2 genome Authors: Dai, X.H, Li, Z.H, Lai, M, Shu, S, Du, Y.S, Zhou, Z.H, Sun, R. Deposit date: 2016-09-13 Release date: 2016-12-07 Last modified: 2018-07-18 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: In situ structures of the genome and genome-delivery apparatus in a single-stranded RNA virus. Nature, 541, 2017
2YIA	Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus Descriptor: POTASSIUM ION, RNA-DIRECTED RNA POLYMERASE Authors: Graham, S.C, Sarin, L.P, Bahar, M.W, Myers, R.A, Stuart, D.I, Bamford, D.H, Grimes, J.M. Deposit date: 2011-05-11 Release date: 2011-07-20 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.02 Å) Cite: The N-Terminus of the RNA Polymerase from Infectious Pancreatic Necrosis Virus is the Determinant of Genome Attachment. Plos Pathog., 7, 2011
2YI8	Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus Descriptor: CHLORIDE ION, POTASSIUM ION, RNA-DIRECTED RNA POLYMERASE Authors: Graham, S.C, Sarin, L.P, Bahar, M.W, Myers, R.A, Stuart, D.I, Bamford, D.H, Grimes, J.M. Deposit date: 2011-05-11 Release date: 2011-07-20 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The N-Terminus of the RNA Polymerase from Infectious Pancreatic Necrosis Virus is the Determinant of Genome Attachment. Plos Pathog., 7, 2011
2YI9	Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus in complex with magnesium Descriptor: CHLORIDE ION, MAGNESIUM ION, POTASSIUM ION, ... Authors: Graham, S.C, Sarin, L.P, Bahar, M.W, Myers, R.A, Stuart, D.I, Bamford, D.H, Grimes, J.M. Deposit date: 2011-05-11 Release date: 2011-07-20 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The N-Terminus of the RNA Polymerase from Infectious Pancreatic Necrosis Virus is the Determinant of Genome Attachment. Plos Pathog., 7, 2011
1YRM	Crystal Structure of an RNA duplex containing site specific 2'-amine substitutions at a C-A mismatch Descriptor: DNA/RNA (5'-R(*GP*CP*AP*GP*A)-D(P*(A5M))-R(P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'), STRONTIUM ION Authors: Gherghe, C.M, Krahn, J.M, Weeks, K.M. Deposit date: 2005-02-04 Release date: 2005-10-18 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA. J.Am.Chem.Soc., 127, 2005
2G5H	Structure of tRNA-Dependent Amidotransferase GatCAB Descriptor: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... Authors: Nakamura, A, Yao, M, Tanaka, I. Deposit date: 2006-02-23 Release date: 2006-07-18 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
357D	3.5 A structure of fragment I from E. coli 5S RRNA Descriptor: MAGNESIUM ION, MERCURY (II) ION, RNA (5'-R(*CP*CP*CP*CP*AP*UP*GP*CP*GP*AP*GP*AP*GP*UP*AP*GP*G P*GP*AP*AP*CP*UP* GP*CP*CP*AP*GP*GP*CP*AP*U)-3'), ... Authors: Correll, C.C, Freeborn, B, Moore, P.B, Steitz, T.A. Deposit date: 1997-10-09 Release date: 1997-12-01 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain. Cell(Cambridge,Mass.), 91, 1997
2XNR	Structural insights into cis element recognition of non- polyadenylated RNAs by the Nab3-RRM Descriptor: 5'-R(*UP*UP*CP*UP*UP*AP*UP*UP*CP*UP*UP*A)-3', ACETATE ION, NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN 3 Authors: Lunde, B.M, Horner, M, Meinhart, A. Deposit date: 2010-08-05 Release date: 2010-09-08 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural Insights Into Cis Element Recognition of Non-Polyadenylated Rnas by the Nab3-Rrm. Nucleic Acids Res., 39, 2011
4PCO	Crystal structure of double-stranded RNA with four terminal GU wobble base pairs Descriptor: CHLORIDE ION, COBALT HEXAMMINE(III), RNA (5'-D(*GP*GP*UP*GP*GP*CP*UP*GP*UP*U)-3') Authors: Mooers, B.H.M. Deposit date: 2014-04-15 Release date: 2015-10-14 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.32 Å) Cite: Structures and Energetics of Four Adjacent GU Pairs That Stabilize an RNA Helix. J.Phys.Chem.B, 119, 2015
7DY6	A refined cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) with SspA Descriptor: DNA (63-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Lin, W. Deposit date: 2021-01-20 Release date: 2021-11-17 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.68 Å) Cite: A unique binding between SspA and RNAP beta' NTH across low-GC Gram-negative bacteria facilitates SspA-mediated transcription regulation. Biochem.Biophys.Res.Commun., 583, 2021
2ZNL	Crystal structure of PA-PB1 complex form influenza virus RNA polymerase Descriptor: Polymerase acidic protein, RNA-directed RNA polymerase catalytic subunit Authors: Obayashi, E, Yoshida, H, Kawai, F, Shibayama, N, Kawaguchi, A, Nagata, K, Tame, J.R.H, Park, S.-Y. Deposit date: 2008-04-28 Release date: 2008-09-02 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The structural basis for an essential subunit interaction in influenza virus RNA polymerase Nature, 454, 2008
1NU4	U1A RNA binding domain at 1.8 angstrom resolution reveals a pre-organized C-terminal helix Descriptor: MAGNESIUM ION, MALONIC ACID, U1A RNA binding domain Authors: Rupert, P.B, Xiao, H, Ferre-D'Amare, A.R. Deposit date: 2003-01-30 Release date: 2003-02-14 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.8 Å) Cite: U1A RNA-binding domain at 1.8 A resolution. Acta Crystallogr.,Sect.D, 59, 2003
1B7F	SXL-LETHAL PROTEIN/RNA COMPLEX Descriptor: PROTEIN (SXL-LETHAL PROTEIN), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3') Authors: Handa, N, Nureki, O, Kurimoto, K, Kim, I, Sakamoto, H, Shimura, Y, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 1999-01-23 Release date: 1999-05-03 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein. Nature, 398, 1999
2DB3	Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa Descriptor: 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3', ATP-dependent RNA helicase vasa, MAGNESIUM ION, ... Authors: Sengoku, T, Nureki, O, Nakamura, A, Kobayashi, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-12-14 Release date: 2006-05-02 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa. Cell(Cambridge,Mass.), 125, 2006
7PTQ	RNA origami 5-helix tile Descriptor: Chains: C Authors: McRae, E.K.S, Andersen, E.S. Deposit date: 2021-09-27 Release date: 2022-10-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (4.08 Å) Cite: Structure, folding and flexibility of co-transcriptional RNA origami. Nat Nanotechnol, 18, 2023
3AHU	Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer. Descriptor: 5'-R(*AP*GP*AP*GP*AP*G)-3', Protein hfq Authors: Baba, S, Someya, T, Kumasaka, T, Kawai, G, Nakamura, K. Deposit date: 2010-04-29 Release date: 2011-07-13 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer. To be Published
2PCV	Solution Structure of an rRNA Substrate Bound to the Pseudouridylation Pocket of a Box H/ACA snoRNA Descriptor: U65 Box H/ACA snoRNA Authors: Jin, H, Loria, J.P, Moore, P.B. Deposit date: 2007-03-30 Release date: 2007-05-08 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of an rRNA substrate bound to the pseudouridylation pocket of a box H/ACA snoRNA. Mol.Cell, 26, 2007

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