Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1MSM
DownloadVisualize
BU of 1msm by Molmil
The HIV protease (mutant Q7K L33I L63I) complexed with KNI-764 (an inhibitor)
Descriptor: (4R)-3-{(2S,3S)-2-hydroxy-3-[(3-hydroxy-2-methylbenzoyl)amino]-4-phenylbutanoyl}-5,5-dimethyl-N-(2-methylbenzyl)-1,3-thiazolidine-4-carboxamide, POL polyprotein
Authors:Vega, S, Kang, L.-W, Velazquez-Campoy, A, Kiso, Y, Amzel, L.M, Freire, E.
Deposit date:2002-09-19
Release date:2003-11-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:A structural and thermodynamic escape mechanism from a drug resistant mutation of the HIV-1 protease.
Proteins, 55, 2004
7AOT
DownloadVisualize
BU of 7aot by Molmil
The Fk1 domain of FKBP51 in complex with (2R,5S,12R)-12-cyclohexyl-2-[2-(3,4-dimethoxyphenyl)ethyl]-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0-5,10]tetracosa- 1(24),20,22-triene-4,11,14,17-tetrone
Descriptor: (2R,5S,12R)-12-cyclohexyl-2-[2-(3,4-dimethoxyphenyl)ethyl]-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0-5,10]tetracosa- 1(24),20,22-triene-4,11,14,17-tetrone, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Voll, A.M, Meyners, C, Heymann, T, Merz, S, Purder, P, Bracher, A, Hausch, F.
Deposit date:2020-10-15
Release date:2021-04-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Macrocyclic FKBP51 Ligands Define a Transient Binding Mode with Enhanced Selectivity.
Angew.Chem.Int.Ed.Engl., 60, 2021
7AWF
DownloadVisualize
BU of 7awf by Molmil
The Fk1 domain of FKBP51 in complex with (2R,5S,12R)-12-cyclohexyl-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15,16-trimethyl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^5,^10]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone
Descriptor: (2~{R},5~{S},12~{R})-12-cyclohexyl-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15,16-trimethyl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^{5,10}]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Voll, M.A, Meyners, C, Heymann, T, Merz, S, Purder, P, Bracher, A, Hausch, F.
Deposit date:2020-11-07
Release date:2021-04-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Macrocyclic FKBP51 Ligands Define a Transient Binding Mode with Enhanced Selectivity.
Angew.Chem.Int.Ed.Engl., 60, 2021
7AOU
DownloadVisualize
BU of 7aou by Molmil
The Fk1 domain of FKBP51 in complex with (2'R,5'S,12'R)-12'-cyclohexyl-2'-[2-(3,4-dimethoxyphenyl)ethyl]-3',19'-dioxa-10',13',16'-triazaspiro[cyclopropane-1,15'- tricyclo[18.3.1.0-5,10]tetracosane]-1'(24'),20',22'-triene-4',11',14',17'-tetrone
Descriptor: (2'R,5'S,12'R)-12'-cyclohexyl-2'-[2-(3,4-dimethoxyphenyl)ethyl]-3',19'-dioxa-10',13',16'-triazaspiro[cyclopropane-1,15'- tricyclo[18.3.1.0-5,10]tetracosane]-1'(24'),20',22'-triene-4',11',14',17'-tetrone, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Voll, M.A, Meyners, C, Heymann, T, Merz, S, Purder, P, Bracher, A, Hausch, F.
Deposit date:2020-10-15
Release date:2021-04-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Macrocyclic FKBP51 Ligands Define a Transient Binding Mode with Enhanced Selectivity.
Angew.Chem.Int.Ed.Engl., 60, 2021
6V79
DownloadVisualize
BU of 6v79 by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 (CD2) complexed with NF2376
Descriptor: 1,2-ETHANEDIOL, 4-{[(2S)-3,3-dimethyl-2-(pyridin-3-yl)-2,3-dihydro-1H-indol-1-yl]methyl}-N-hydroxybenzamide, Hdac6 protein, ...
Authors:Osko, J.D, Christianson, D.W.
Deposit date:2019-12-08
Release date:2020-12-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.03951526 Å)
Cite:Harnessing the Role of HDAC6 in Idiopathic Pulmonary Fibrosis: Design, Synthesis, Structural Analysis, and Biological Evaluation of Potent Inhibitors.
J.Med.Chem., 64, 2021
4JJ0
DownloadVisualize
BU of 4jj0 by Molmil
Crystal structure of MamP
Descriptor: GLYCEROL, HEME C, MamP
Authors:Siponen, M, Pignol, D, Arnoux, P.
Deposit date:2013-03-07
Release date:2013-10-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into magnetochrome-mediated magnetite biomineralization.
Nature, 502, 2013
6Y1W
DownloadVisualize
BU of 6y1w by Molmil
Xcc4156, a flavin-dependent halogenase from Xanthomonas campestris
Descriptor: (2S,3S)-butane-2,3-diol, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, L(+)-TARTARIC ACID, ...
Authors:Widmann, C, Ismail, M, Sewald, N, Niemann, H.H.
Deposit date:2020-02-14
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of apo flavin-dependent halogenase Xcc4156 hints at a reason for cofactor-soaking difficulties.
Acta Crystallogr D Struct Biol, 76, 2020
3QSB
DownloadVisualize
BU of 3qsb by Molmil
Structure of E. coli polIIIbeta with (Z)-5-(1-((4'-Fluorobiphenyl-4-yl)methoxyimino)butyl)-2,2-dimethyl-4,6-dioxocyclohexanecarbonitrile
Descriptor: (1R,5R)-5-{(1Z)-N-[(4'-fluorobiphenyl-4-yl)methoxy]butanimidoyl}-2,2-dimethyl-4,6-dioxocyclohexanecarbonitrile, DNA polymerase III subunit beta
Authors:Wijffels, G, Johnson, W.M, Oakley, A.J, Turner, K, Epa, V.C, Briscoe, S.J, Polley, M, Liepa, A.J, Hofmann, A, Buchardt, J, Christensen, C, Prosselkov, P, Dalrymple, B.P, Alewood, P.F, Jennings, P.A, Dixon, N.E, Winkler, D.A.
Deposit date:2011-02-20
Release date:2011-06-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Binding inhibitors of the bacterial sliding clamp by design
J.Med.Chem., 54, 2011
1LOK
DownloadVisualize
BU of 1lok by Molmil
The 1.20 Angstrom Resolution Crystal Structure of the Aminopeptidase from Aeromonas proteolytica Complexed with Tris: A Tale of Buffer Inhibition
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bacterial leucyl aminopeptidase, SODIUM ION, ...
Authors:Desmarais, W.T, Bienvenue, D.L, Bzymek, K.P, Holz, R.C, Petsko, G.A, Ringe, D.
Deposit date:2002-05-06
Release date:2002-11-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The 1.20 Angstrom Resolution Crystal Structure of the Aminopeptidase from Aeromonas proteolytica Complexed with Tris A tale of Buffer Inhibition
Structure, 10, 2002
7N6V
DownloadVisualize
BU of 7n6v by Molmil
Crystal structure of HIV-1 Protease multiple mutants PRS17 with Revertant mutation V48G bound to inhibitor Amprenavir
Descriptor: GLYCEROL, Protease, {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER
Authors:Burnaman, S.H, Wang, Y.-F, Weber, I.T.
Deposit date:2021-06-09
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Revertant mutation V48G alters conformational dynamics of highly drug resistant HIV protease PRS17.
J.Mol.Graph.Model., 108, 2021
4JY9
DownloadVisualize
BU of 4jy9 by Molmil
X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters
Descriptor: CHAPSO, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Nicolet, Y, Rohac, R, Martin, L, Fontecilla-Camps, J.C.
Deposit date:2013-03-29
Release date:2013-05-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JYF
DownloadVisualize
BU of 4jyf by Molmil
X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
Descriptor: CARBONATE ION, CHAPSO, CHLORIDE ION, ...
Authors:Nicolet, Y, Rohac, R, Martin, L, Fontecilla-Camps, J.C.
Deposit date:2013-03-29
Release date:2013-05-01
Last modified:2013-05-15
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JYE
DownloadVisualize
BU of 4jye by Molmil
X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
Descriptor: BROMIDE ION, Biotin synthetase, putative, ...
Authors:Nicolet, Y, Rohac, R, Martin, L, Fontecilla-Camps, J.C.
Deposit date:2013-03-29
Release date:2013-05-01
Last modified:2013-05-15
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
Proc.Natl.Acad.Sci.USA, 110, 2013
4J5J
DownloadVisualize
BU of 4j5j by Molmil
Crystal Structure of Multidrug Resistant HIV-1 Protease Clinical Isolate PR20 in Complex with Amprenavir
Descriptor: CHLORIDE ION, Protease, {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER
Authors:Shen, C.H, Weber, I.T.
Deposit date:2013-02-08
Release date:2013-05-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Extreme Multidrug Resistant HIV-1 Protease with 20 Mutations Is Resistant to Novel Protease Inhibitors with P1'-Pyrrolidinone or P2-Tris-tetrahydrofuran.
J.Med.Chem., 56, 2013
3G65
DownloadVisualize
BU of 3g65 by Molmil
Crystal Structure of the Human Rad9-Rad1-Hus1 DNA Damage Checkpoint Complex
Descriptor: Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1, Checkpoint protein HUS1
Authors:Dore, A.S, Kilkenny, M.L, Rzechorzek, N.J, Pearl, L.H.
Deposit date:2009-02-06
Release date:2009-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the rad9-rad1-hus1 DNA damage checkpoint complex--implications for clamp loading and regulation.
Mol.Cell, 34, 2009
4JYD
DownloadVisualize
BU of 4jyd by Molmil
X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
Descriptor: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, BROMIDE ION, CHAPSO, ...
Authors:Nicolet, Y, Rohac, R, Martin, L, Fontecilla-Camps, J.C.
Deposit date:2013-03-29
Release date:2013-05-01
Last modified:2013-05-15
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
Proc.Natl.Acad.Sci.USA, 110, 2013
3GIT
DownloadVisualize
BU of 3git by Molmil
Crystal structure of a truncated acetyl-CoA synthase
Descriptor: Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha, GLYCEROL, HYDROSULFURIC ACID, ...
Authors:Volbeda, A, Darnault, C, Fontecilla-Camps, J.C.
Deposit date:2009-03-06
Release date:2009-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Novel domain arrangement in the crystal structure of a truncated acetyl-CoA synthase from Moorella thermoacetica
Biochemistry, 48, 2009
8GS7
DownloadVisualize
BU of 8gs7 by Molmil
SOLUTION NMR STRUCTURE OF N-TERMINAL DOMAIN OF TRICONEPHILA CLAVIPES MAJOR AMPULLATE SPIDROIN 2
Descriptor: Major ampullate spidroin 2 variant 3
Authors:Oktaviani, N.A, Malay, A.D, Matsugami, A, Hayashi, F, Numata, K.
Deposit date:2022-09-05
Release date:2023-03-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unusual p K a Values Mediate the Self-Assembly of Spider Dragline Silk Proteins.
Biomacromolecules, 24, 2023
1SJX
DownloadVisualize
BU of 1sjx by Molmil
Three-Dimensional Structure of a Llama VHH Domain OE7 binding the cell wall protein Malf1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, immunoglobulin VH domain
Authors:Dolk, E, van der Vaart, M, Hulsik, D.L, Vriend, G, de Haard, H, Spinelli, S, Cambillau, C, Frenken, L, Verrips, T.
Deposit date:2004-03-04
Release date:2005-03-15
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Isolation of llama antibody fragments for prevention of dandruff by phage display in shampoo.
Appl.Environ.Microbiol., 71, 2005
6R5F
DownloadVisualize
BU of 6r5f by Molmil
Crystal structure of RIP1 kinase in complex with DHP77
Descriptor: Receptor-interacting serine/threonine-protein kinase 1, [(5~{S})-5-[3,5-bis(fluoranyl)phenyl]pyrazolidin-1-yl]-[1-(5-methyl-1,3,4-oxadiazol-2-yl)piperidin-4-yl]methanone
Authors:Thorpe, J.H, Campobasso, N, Harris, P.A.
Deposit date:2019-03-25
Release date:2019-05-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Discovery and Lead-Optimization of 4,5-Dihydropyrazoles as Mono-Kinase Selective, Orally Bioavailable and Efficacious Inhibitors of Receptor Interacting Protein 1 (RIP1) Kinase.
J.Med.Chem., 62, 2019
4JJ3
DownloadVisualize
BU of 4jj3 by Molmil
Crystal structure of MamP soaked with iron(II)
Descriptor: HEME C, MamP
Authors:Siponen, M, Pignol, D, Arnoux, P.
Deposit date:2013-03-07
Release date:2013-10-09
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insight into magnetochrome-mediated magnetite biomineralization.
Nature, 502, 2013
4JY8
DownloadVisualize
BU of 4jy8 by Molmil
X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters
Descriptor: CHLORIDE ION, FEFE-HYDROGENASE MATURASE, HYDROSULFURIC ACID, ...
Authors:Nicolet, Y, Rohac, R, Martin, L, Fontecilla-Camps, J.C.
Deposit date:2013-03-29
Release date:2013-05-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.901 Å)
Cite:X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
Proc.Natl.Acad.Sci.USA, 110, 2013
1P0Q
DownloadVisualize
BU of 1p0q by Molmil
Crystal structure of soman-aged human butyryl cholinesterase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Nicolet, Y, Lockridge, O, Masson, P, Fontecilla-Camps, J.C, Nachon, F.
Deposit date:2003-04-10
Release date:2003-08-05
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Crystal structure of human butyrylcholinesterase and of its complexes with substrate and products.
J.Biol.Chem., 278, 2003
6VZK
DownloadVisualize
BU of 6vzk by Molmil
Crystal structure of human CaMKII-alpha (CAMK2A)kinase domain
Descriptor: 4'-HYDROXYCINNAMIC ACID, Calcium/calmodulin-dependent protein kinase type II subunit alpha
Authors:Ozden, C, Stratton, M.M, Garman, S.C.
Deposit date:2020-02-28
Release date:2020-04-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Characterization of CaMKII alpha holoenzyme stability.
Protein Sci., 29, 2020
6TL2
DownloadVisualize
BU of 6tl2 by Molmil
Crystal structure of Eremococcus coleocola manganese transporter in complex with an aromatic bis-isothiourea substituted compound
Descriptor: Divalent metal cation transporter MntH, [3-bromanyl-5-(carbamimidoylsulfanylmethyl)phenyl]methyl carbamimidothioate
Authors:Manatschal, C, Dutzler, R.
Deposit date:2019-11-29
Release date:2019-12-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Mechanistic basis of the inhibition of SLC11/NRAMP-mediated metal ion transport by bis-isothiourea substituted compounds.
Elife, 8, 2019

227111

數據於2024-11-06公開中

PDB statisticsPDBj update infoContact PDBjnumon